Wall clock time and date at job start Tue Mar 31 2020 18:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00156 * 2 1 4 4 C 1.50699 * 109.47006 * 293.95391 * 3 2 1 5 5 C 1.38223 * 119.61913 * 95.00189 * 4 3 2 6 6 C 1.38631 * 119.15971 * 179.97438 * 5 4 3 7 7 C 1.38668 * 118.41995 * 0.02562 * 6 5 4 8 8 C 1.38176 * 119.16490 * 359.97438 * 7 6 5 9 9 N 1.31857 * 119.61526 * 274.72278 * 4 3 2 10 10 C 1.46903 * 110.99879 * 123.95347 * 2 1 3 11 11 H 1.08998 * 110.88395 * 298.06846 * 10 2 1 12 12 C 1.55153 * 111.00620 * 174.18720 * 10 2 1 13 13 C 1.54370 * 102.92190 * 206.45614 * 12 10 2 14 14 N 1.47018 * 107.29012 * 22.13203 * 13 12 10 15 15 C 1.34776 * 125.64900 * 181.05803 * 14 13 12 16 16 O 1.21284 * 119.99791 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.00315 * 0.04443 * 15 14 13 18 18 S 1.80996 * 109.47271 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99990 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00164 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99773 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47338 * 89.99865 * 23 21 19 25 25 H 1.48505 * 109.47008 * 210.00136 * 23 21 19 26 26 H 1.48502 * 109.47203 * 329.99586 * 23 21 19 27 27 C 1.47426 * 108.70314 * 1.09824 * 14 13 12 28 28 H 1.09005 * 109.46838 * 65.28074 * 1 2 3 29 29 H 1.09001 * 109.46931 * 185.27688 * 1 2 3 30 30 H 1.08997 * 109.47237 * 305.27938 * 1 2 3 31 31 H 1.09000 * 109.47039 * 173.94538 * 3 2 1 32 32 H 1.09003 * 109.47021 * 53.95188 * 3 2 1 33 33 H 1.08002 * 120.42177 * 359.97438 * 5 4 3 34 34 H 1.08006 * 120.78657 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.41918 * 180.02562 * 7 6 5 36 36 H 1.08005 * 119.62136 * 180.02562 * 8 7 6 37 37 H 1.09003 * 110.71862 * 324.78380 * 12 10 2 38 38 H 1.09001 * 110.72165 * 88.05787 * 12 10 2 39 39 H 1.09003 * 109.84506 * 262.73039 * 13 12 10 40 40 H 1.08994 * 110.03593 * 141.64826 * 13 12 10 41 41 H 1.09001 * 109.46930 * 300.00065 * 17 15 14 42 42 H 1.09000 * 109.46690 * 60.00151 * 17 15 14 43 43 H 0.96998 * 119.99754 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.37002 * 217.02637 * 27 14 13 45 45 H 1.08998 * 110.46101 * 94.75310 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 0.5018 2.8326 -1.3691 6 6 0.1813 3.4501 -2.5682 7 6 1.0181 3.2532 -3.6563 8 6 2.1358 2.4541 -3.5103 9 7 2.4128 1.8866 -2.3524 10 6 1.9954 -0.7660 1.1376 11 1 1.6873 -0.3191 2.0828 12 6 3.5400 -0.8893 1.0581 13 6 3.8224 -2.1947 1.8320 14 7 2.5837 -2.9864 1.8202 15 6 2.4130 -4.1868 2.4087 16 8 1.3426 -4.7522 2.3337 17 6 3.5519 -4.8263 3.1603 18 16 3.0139 -6.4196 3.8297 19 6 4.4960 -6.9295 4.6346 20 1 5.3714 -6.2976 4.6050 21 6 4.5386 -8.1432 5.3067 22 7 5.6457 -8.5239 5.9084 23 14 3.0247 -9.2364 5.3572 24 1 3.0433 -10.1617 4.1960 25 1 3.0238 -10.0228 6.6169 26 1 1.8033 -8.3936 5.2991 27 6 1.5594 -2.2503 1.0570 28 1 -0.3633 0.4298 -0.9336 29 1 -0.3633 -1.0233 0.0945 30 1 -0.3633 0.5935 0.8389 31 1 3.0798 1.3444 0.1084 32 1 1.5611 1.9274 0.8309 33 1 -0.1275 2.9636 -0.5012 34 1 -0.6992 4.0699 -2.6528 35 1 0.7993 3.7192 -4.6058 36 1 2.7928 2.2960 -4.3528 37 1 3.8670 -0.9772 0.0220 38 1 4.0202 -0.0402 1.5444 39 1 4.1040 -1.9625 2.8591 40 1 4.6230 -2.7517 1.3453 41 1 4.3919 -4.9820 2.4834 42 1 3.8597 -4.1738 3.9774 43 1 5.6752 -9.3719 6.3784 44 1 0.5784 -2.3828 1.5130 45 1 1.5432 -2.5851 0.0198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:49 Heat of formation + Delta-G solvation = 17.153933 kcal Electronic energy + Delta-G solvation = -25479.938312 eV Core-core repulsion = 21816.981299 eV Total energy + Delta-G solvation = -3662.957013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74211 -39.95704 -38.16541 -36.04639 -32.94136 -32.42628 -32.34097 -31.03130 -29.84041 -28.14433 -27.66468 -25.61549 -24.89731 -23.87151 -22.88374 -22.10124 -20.46219 -19.38506 -17.73485 -17.29880 -17.03602 -16.64820 -16.61718 -16.06732 -15.38877 -15.34065 -14.99988 -14.77530 -14.48301 -14.23024 -13.94665 -13.68232 -13.64900 -13.44557 -13.18963 -13.01306 -12.81502 -12.58866 -12.46659 -12.20948 -11.98302 -11.87504 -11.43307 -11.24249 -11.16430 -11.12564 -10.99057 -10.59002 -10.28230 -9.84604 -9.79933 -9.51419 -9.47125 -8.98644 -8.76374 -8.54774 -8.47875 -6.90235 -6.27281 -3.98906 0.64807 0.86988 2.66644 2.96329 3.10161 3.31277 3.35199 3.52181 3.60220 3.76001 3.85665 4.14823 4.29151 4.34950 4.41905 4.45411 4.58980 4.68995 4.72087 4.79491 4.85868 4.94292 5.07651 5.07918 5.11817 5.14446 5.21352 5.24848 5.25901 5.40235 5.51032 5.59946 5.61747 5.65460 5.70008 5.73886 5.74111 5.83199 5.93052 6.04402 6.25229 6.32785 6.56499 6.67229 7.59923 7.63789 7.95813 8.43356 8.45516 9.18950 10.81894 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.001888 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.328613 B =14825.724121 C =15181.649429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.521 5.521 3 C 0.102 3.898 4 C 0.140 3.860 5 C -0.168 4.168 6 C -0.076 4.076 7 C -0.177 4.177 8 C 0.101 3.899 9 N -0.465 5.465 10 C 0.069 3.931 11 H 0.061 0.939 12 C -0.123 4.123 13 C 0.102 3.898 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.519 6.519 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.120 3.880 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.750 28.425 -16.718 34.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.245 5.245 3 C -0.026 4.026 4 C 0.001 3.999 5 C -0.188 4.188 6 C -0.102 4.102 7 C -0.197 4.197 8 C -0.056 4.056 9 N -0.174 5.174 10 C -0.040 4.040 11 H 0.079 0.921 12 C -0.161 4.161 13 C -0.022 4.022 14 N -0.361 5.361 15 C 0.336 3.664 16 O -0.393 6.393 17 C -0.267 4.267 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.004 4.004 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.337 26.599 -17.013 32.926 hybrid contribution -0.218 1.080 0.777 1.348 sum -9.555 27.679 -16.236 33.482 Atomic orbital electron populations 1.22523 0.86916 1.02678 1.00962 1.61883 1.08066 1.12226 1.42372 1.20983 1.02049 0.87978 0.91556 1.21030 0.90845 0.93605 0.94379 1.22007 0.98379 0.99349 0.99106 1.21575 0.98821 0.97200 0.92593 1.22173 0.96663 1.00876 0.99962 1.22814 0.95156 0.92519 0.95103 1.67504 1.30939 1.19810 0.99150 1.22803 0.95586 0.93703 0.91906 0.92094 1.22738 0.94369 0.96814 1.02210 1.22034 0.87639 0.91615 1.00876 1.48370 1.13503 1.19519 1.54750 1.19979 0.89459 0.78895 0.78023 1.90704 1.27516 1.61389 1.59719 1.23248 0.99258 1.02030 1.02207 1.84783 1.21528 1.17278 1.68072 1.22311 0.97233 1.08804 1.38456 0.89368 1.24709 0.96330 0.96683 0.93573 1.69939 1.26332 1.22216 1.33200 0.86736 0.84621 0.82027 0.78478 1.19195 1.19953 1.15932 1.22061 0.92363 0.88916 0.97016 0.91301 0.90651 0.95182 0.88423 0.92959 0.85078 0.84891 0.84841 0.82687 0.88997 0.90086 0.91114 0.90785 0.88509 0.88530 0.91960 0.90645 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.98 60.07 0.54 0.67 16 2 N -0.52 -4.49 4.65 -233.74 -1.09 -5.58 16 3 C 0.10 0.76 5.17 -4.98 -0.03 0.74 16 4 C 0.14 1.15 5.64 -82.59 -0.47 0.69 16 5 C -0.17 -1.08 8.51 -39.44 -0.34 -1.42 16 6 C -0.08 -0.42 10.18 -39.28 -0.40 -0.82 16 7 C -0.18 -0.99 10.11 -39.45 -0.40 -1.39 16 8 C 0.10 0.73 11.18 -17.55 -0.20 0.54 16 9 N -0.46 -4.42 10.27 -9.47 -0.10 -4.52 16 10 C 0.07 0.63 2.71 -65.56 -0.18 0.45 16 11 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 12 C -0.12 -1.04 5.34 -24.87 -0.13 -1.17 16 13 C 0.10 1.09 6.49 -3.04 -0.02 1.07 16 14 N -0.62 -8.96 3.33 -170.50 -0.57 -9.53 16 15 C 0.55 10.39 7.87 -10.99 -0.09 10.30 16 16 O -0.52 -11.73 16.12 5.55 0.09 -11.64 16 17 C -0.12 -2.35 5.35 36.00 0.19 -2.16 16 18 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 23 Si 0.86 21.99 27.74 -169.99 -4.72 17.28 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 27 C 0.12 1.46 5.34 -2.53 -0.01 1.45 16 28 H 0.07 0.53 6.74 -51.93 -0.35 0.18 16 29 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 30 H 0.03 0.20 8.07 -51.93 -0.42 -0.22 16 31 H 0.10 0.74 6.75 -51.93 -0.35 0.39 16 32 H 0.05 0.32 7.97 -51.93 -0.41 -0.10 16 33 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 35 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 42 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -35.55 381.37 -10.07 -45.62 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.92 Total: -2.61 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.30 Total: -3.15 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.98 Total: -45.55 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.72 Total: 17.28 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.55 -10.07 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.773 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds