Wall clock time and date at job start Tue Mar 31 2020 18:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00156 * 2 1 4 4 C 1.50699 * 109.47006 * 293.95391 * 3 2 1 5 5 C 1.38223 * 119.61913 * 95.00189 * 4 3 2 6 6 C 1.38631 * 119.15971 * 179.97438 * 5 4 3 7 7 C 1.38668 * 118.41995 * 0.02562 * 6 5 4 8 8 C 1.38176 * 119.16490 * 359.97438 * 7 6 5 9 9 N 1.31857 * 119.61526 * 274.72278 * 4 3 2 10 10 C 1.46903 * 110.99879 * 123.95347 * 2 1 3 11 11 H 1.08998 * 110.88395 * 298.06846 * 10 2 1 12 12 C 1.55153 * 111.00620 * 174.18720 * 10 2 1 13 13 C 1.54370 * 102.92190 * 206.45614 * 12 10 2 14 14 N 1.47018 * 107.29012 * 22.13203 * 13 12 10 15 15 C 1.34776 * 125.64900 * 181.05803 * 14 13 12 16 16 O 1.21284 * 119.99791 * 180.02562 * 15 14 13 17 17 C 1.50696 * 120.00315 * 0.04443 * 15 14 13 18 18 S 1.80996 * 109.47271 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99990 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00164 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99773 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47338 * 89.99865 * 23 21 19 25 25 H 1.48505 * 109.47008 * 210.00136 * 23 21 19 26 26 H 1.48502 * 109.47203 * 329.99586 * 23 21 19 27 27 C 1.47426 * 108.70314 * 1.09824 * 14 13 12 28 28 H 1.09005 * 109.46838 * 65.28074 * 1 2 3 29 29 H 1.09001 * 109.46931 * 185.27688 * 1 2 3 30 30 H 1.08997 * 109.47237 * 305.27938 * 1 2 3 31 31 H 1.09000 * 109.47039 * 173.94538 * 3 2 1 32 32 H 1.09003 * 109.47021 * 53.95188 * 3 2 1 33 33 H 1.08002 * 120.42177 * 359.97438 * 5 4 3 34 34 H 1.08006 * 120.78657 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.41918 * 180.02562 * 7 6 5 36 36 H 1.08005 * 119.62136 * 180.02562 * 8 7 6 37 37 H 1.09003 * 110.71862 * 324.78380 * 12 10 2 38 38 H 1.09001 * 110.72165 * 88.05787 * 12 10 2 39 39 H 1.09003 * 109.84506 * 262.73039 * 13 12 10 40 40 H 1.08994 * 110.03593 * 141.64826 * 13 12 10 41 41 H 1.09001 * 109.46930 * 300.00065 * 17 15 14 42 42 H 1.09000 * 109.46690 * 60.00151 * 17 15 14 43 43 H 0.96998 * 119.99754 * 179.97438 * 22 21 19 44 44 H 1.08996 * 110.37002 * 217.02637 * 27 14 13 45 45 H 1.08998 * 110.46101 * 94.75310 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 0.5018 2.8326 -1.3691 6 6 0.1813 3.4501 -2.5682 7 6 1.0181 3.2532 -3.6563 8 6 2.1358 2.4541 -3.5103 9 7 2.4128 1.8866 -2.3524 10 6 1.9954 -0.7660 1.1376 11 1 1.6873 -0.3191 2.0828 12 6 3.5400 -0.8893 1.0581 13 6 3.8224 -2.1947 1.8320 14 7 2.5837 -2.9864 1.8202 15 6 2.4130 -4.1868 2.4087 16 8 1.3426 -4.7522 2.3337 17 6 3.5519 -4.8263 3.1603 18 16 3.0139 -6.4196 3.8297 19 6 4.4960 -6.9295 4.6346 20 1 5.3714 -6.2976 4.6050 21 6 4.5386 -8.1432 5.3067 22 7 5.6457 -8.5239 5.9084 23 14 3.0247 -9.2364 5.3572 24 1 3.0433 -10.1617 4.1960 25 1 3.0238 -10.0228 6.6169 26 1 1.8033 -8.3936 5.2991 27 6 1.5594 -2.2503 1.0570 28 1 -0.3633 0.4298 -0.9336 29 1 -0.3633 -1.0233 0.0945 30 1 -0.3633 0.5935 0.8389 31 1 3.0798 1.3444 0.1084 32 1 1.5611 1.9274 0.8309 33 1 -0.1275 2.9636 -0.5012 34 1 -0.6992 4.0699 -2.6528 35 1 0.7993 3.7192 -4.6058 36 1 2.7928 2.2960 -4.3528 37 1 3.8670 -0.9772 0.0220 38 1 4.0202 -0.0402 1.5444 39 1 4.1040 -1.9625 2.8591 40 1 4.6230 -2.7517 1.3453 41 1 4.3919 -4.9820 2.4834 42 1 3.8597 -4.1738 3.9774 43 1 5.6752 -9.3719 6.3784 44 1 0.5784 -2.3828 1.5130 45 1 1.5432 -2.5851 0.0198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188959032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:49 Heat of formation + Delta-G solvation = -7.286727 kcal Electronic energy + Delta-G solvation = -25480.998138 eV Core-core repulsion = 21816.981299 eV Total energy + Delta-G solvation = -3664.016839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37794 -40.96002 -39.23570 -36.99936 -34.67767 -33.43221 -33.05514 -31.99383 -31.01626 -29.16701 -28.31374 -27.85199 -25.67392 -24.34677 -23.82117 -22.66052 -21.20757 -20.75759 -19.62318 -18.22145 -17.90229 -17.63363 -17.17250 -17.13406 -16.72993 -16.44022 -16.34062 -15.80168 -15.62444 -15.22156 -15.11227 -14.90369 -14.43478 -14.32805 -14.09915 -14.05275 -13.79811 -13.67969 -13.44926 -13.33960 -13.12223 -13.01821 -12.77779 -12.65601 -12.52785 -12.10980 -11.93679 -11.87509 -11.85645 -11.17571 -11.06762 -10.75015 -10.55308 -10.29766 -9.94720 -9.76612 -9.36133 -9.01880 -8.51879 -6.23360 0.18505 0.42603 0.94463 1.31172 1.44042 1.47892 1.52144 1.98191 2.24740 2.64566 2.70130 2.86198 3.15525 3.26261 3.41407 3.62882 3.76309 3.84858 4.02104 4.07179 4.15157 4.17383 4.24765 4.29621 4.31485 4.39327 4.40696 4.44909 4.57920 4.61118 4.67481 4.78399 4.81306 4.86391 4.92419 4.95201 4.99367 5.16564 5.24039 5.27635 5.32259 5.70523 5.82480 5.96216 6.00414 6.10990 6.31893 6.93079 7.01379 7.15160 8.60398 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.001888 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.328613 B =14825.724121 C =15181.649429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.105 3.895 4 C 0.120 3.880 5 C -0.171 4.171 6 C -0.080 4.080 7 C -0.175 4.175 8 C 0.081 3.919 9 N -0.500 5.500 10 C 0.082 3.918 11 H 0.071 0.929 12 C -0.111 4.111 13 C 0.092 3.908 14 N -0.615 5.615 15 C 0.548 3.452 16 O -0.564 6.564 17 C -0.101 4.101 18 S -0.176 6.176 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.238 1.238 27 C 0.118 3.882 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 30.719 -17.451 36.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.022 4.022 4 C -0.018 4.018 5 C -0.191 4.191 6 C -0.106 4.106 7 C -0.195 4.195 8 C -0.075 4.075 9 N -0.210 5.210 10 C -0.027 4.027 11 H 0.089 0.911 12 C -0.149 4.149 13 C -0.030 4.030 14 N -0.350 5.350 15 C 0.336 3.664 16 O -0.443 6.443 17 C -0.252 4.252 18 S 0.051 5.949 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.162 1.162 27 C -0.005 4.005 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.232 28.947 -17.763 35.471 hybrid contribution 0.117 0.558 0.872 1.042 sum -10.115 29.506 -16.891 35.471 Atomic orbital electron populations 1.22486 0.86523 1.02236 1.01536 1.61834 1.08561 1.13226 1.42072 1.20996 1.01964 0.87244 0.92041 1.21192 0.91680 0.94597 0.94376 1.22229 0.97935 0.98809 1.00163 1.21963 0.99489 0.96984 0.92154 1.22476 0.95832 1.00014 1.01144 1.23156 0.96284 0.93046 0.95036 1.67452 1.32185 1.21140 1.00183 1.22654 0.95918 0.91514 0.92655 0.91143 1.22705 0.93903 0.96364 1.01906 1.22373 0.86092 0.92253 1.02315 1.48320 1.15507 1.18205 1.52939 1.19669 0.88293 0.80067 0.78351 1.90683 1.28820 1.63041 1.61779 1.23193 1.00108 0.98930 1.02985 1.84716 1.20390 1.21479 1.68313 1.22435 0.97734 1.08732 1.38717 0.91855 1.25544 0.99036 0.98019 0.93273 1.70012 1.28123 1.23102 1.34054 0.85881 0.81034 0.80311 0.79230 1.18731 1.18157 1.16172 1.22167 0.91467 0.90914 0.95949 0.91316 0.91760 0.93788 0.88628 0.91300 0.83428 0.82344 0.82395 0.81465 0.89413 0.87314 0.89737 0.90257 0.87190 0.86892 0.91331 0.91684 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.98 127.69 1.15 1.43 16 2 N -0.53 -8.30 4.65 -893.42 -4.16 -12.46 16 3 C 0.11 1.36 5.17 85.56 0.44 1.80 16 4 C 0.12 1.80 5.64 42.55 0.24 2.04 16 5 C -0.17 -1.84 8.51 22.36 0.19 -1.65 16 6 C -0.08 -0.69 10.18 22.47 0.23 -0.46 16 7 C -0.17 -1.61 10.11 22.36 0.23 -1.39 16 8 C 0.08 1.10 11.18 84.67 0.95 2.04 16 9 N -0.50 -9.11 10.27 -183.89 -1.89 -11.00 16 10 C 0.08 1.33 2.71 46.31 0.13 1.45 16 11 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 12 C -0.11 -1.58 5.34 31.80 0.17 -1.41 16 13 C 0.09 1.77 6.49 86.75 0.56 2.33 16 14 N -0.61 -16.96 3.33 -811.72 -2.70 -19.66 16 15 C 0.55 20.53 7.87 87.66 0.69 21.22 16 16 O -0.56 -25.75 16.12 -3.04 -0.05 -25.80 16 17 C -0.10 -4.02 5.35 71.23 0.38 -3.64 16 18 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 19 C -0.53 -31.15 10.04 67.95 0.68 -30.46 16 20 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 21 C 0.05 2.77 5.50 84.86 0.47 3.24 16 22 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 23 Si 0.91 45.47 27.74 68.60 1.90 47.38 16 24 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 27 C 0.12 2.79 5.34 86.86 0.46 3.25 16 28 H 0.07 0.97 6.74 -2.38 -0.02 0.95 16 29 H 0.06 1.03 6.73 -2.39 -0.02 1.02 16 30 H 0.04 0.49 8.07 -2.39 -0.02 0.47 16 31 H 0.10 1.25 6.75 -2.39 -0.02 1.23 16 32 H 0.07 0.65 7.97 -2.39 -0.02 0.63 16 33 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 35 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.02 7.88 -2.39 -0.02 1.00 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 42 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.06 1.68 7.70 -2.39 -0.02 1.67 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -77.92 381.37 0.26 -77.66 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.94 Total: 9.88 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 6.96 Total: -0.20 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -8.44 Total: -98.77 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -77.92 0.26 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.369 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds