Wall clock time and date at job start Tue Mar 31 2020 19:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35725 * 117.00109 * 2 1 4 4 C 1.38893 * 119.81622 * 359.72681 * 3 2 1 5 5 C 1.38268 * 120.18010 * 179.76194 * 4 3 2 6 6 O 1.35663 * 120.09645 * 180.27458 * 5 4 3 7 7 C 1.40420 * 119.81661 * 0.51077 * 5 4 3 8 8 C 1.47016 * 120.18310 * 179.76589 * 7 5 4 9 9 O 1.21649 * 119.99922 * 269.97917 * 8 7 5 10 10 N 1.34771 * 119.99716 * 89.97324 * 8 7 5 11 11 C 1.46506 * 119.99996 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.41096 * 35.14708 * 11 10 8 13 13 C 1.52952 * 109.41260 * 155.00157 * 11 10 8 14 14 C 1.53238 * 109.40355 * 183.70760 * 13 11 10 15 15 C 1.51266 * 108.53470 * 305.37590 * 14 13 11 16 16 C 1.37884 * 120.84782 * 231.32418 * 15 14 13 17 17 N 1.31513 * 120.00013 * 0.02562 * 16 15 14 18 18 Si 1.86799 * 119.99797 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47207 * 60.00263 * 18 16 15 20 20 H 1.48500 * 109.46857 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47126 * 299.99769 * 18 16 15 22 22 C 1.51268 * 118.30499 * 51.34868 * 15 14 13 23 23 C 1.52953 * 109.41727 * 275.35858 * 11 10 8 24 24 C 1.40387 * 119.64071 * 359.74127 * 7 5 4 25 25 O 1.35655 * 120.09226 * 180.02562 * 24 7 5 26 26 C 1.42907 * 117.00040 * 179.97438 * 25 24 7 27 27 C 1.38316 * 119.81084 * 0.02562 * 24 7 5 28 28 H 1.08998 * 109.46946 * 300.00201 * 1 2 3 29 29 H 1.09004 * 109.47453 * 59.99457 * 1 2 3 30 30 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.90933 * 0.02562 * 4 3 2 32 32 H 0.96701 * 113.99668 * 270.24334 * 6 5 4 33 33 H 0.97002 * 120.00551 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.48575 * 303.68923 * 13 11 10 35 35 H 1.09003 * 109.48659 * 63.71766 * 13 11 10 36 36 H 1.08996 * 109.62411 * 65.09048 * 14 13 11 37 37 H 1.09001 * 109.62728 * 185.46767 * 14 13 11 38 38 H 0.96999 * 120.00381 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.62500 * 68.35828 * 22 15 14 40 40 H 1.08994 * 109.62747 * 188.74813 * 22 15 14 41 41 H 1.09000 * 109.48712 * 296.27435 * 23 11 10 42 42 H 1.09012 * 109.48160 * 56.31204 * 23 11 10 43 43 H 1.08992 * 109.47130 * 180.02562 * 26 25 24 44 44 H 1.09007 * 109.46177 * 299.99917 * 26 25 24 45 45 H 1.09001 * 109.47377 * 59.99368 * 26 25 24 46 46 H 1.08002 * 119.90589 * 179.97438 * 27 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2850 2.3717 -0.0057 5 6 1.9048 3.6077 -0.0008 6 8 1.1607 4.7420 -0.0008 7 6 3.3069 3.6856 -0.0008 8 6 3.9744 4.9955 -0.0008 9 8 4.2508 5.5373 -1.0543 10 7 4.2798 5.5960 1.1664 11 6 4.9455 6.9011 1.1665 12 1 4.5834 7.4925 0.3255 13 6 4.6326 7.6313 2.4735 14 6 5.2519 9.0324 2.4348 15 6 6.7282 8.8975 2.1340 16 6 7.6708 9.5157 2.9280 17 7 7.2907 10.2335 3.9624 18 14 9.4878 9.3338 2.5343 19 1 9.7560 9.8697 1.1756 20 1 10.2882 10.0897 3.5309 21 1 9.8635 7.8980 2.5833 22 6 7.1439 8.0675 0.9397 23 6 6.4560 6.7015 1.0327 24 6 4.0678 2.5058 -0.0004 25 8 5.4228 2.5704 0.0001 26 6 6.1315 1.3295 0.0012 27 6 3.4320 1.2775 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2068 2.3101 -0.0098 32 1 0.9448 5.0707 -0.8843 33 1 4.0596 5.1639 2.0065 34 1 3.5525 7.7144 2.5940 35 1 5.0499 7.0723 3.3112 36 1 4.7718 9.6234 1.6548 37 1 5.1150 9.5201 3.4000 38 1 7.9539 10.6681 4.5212 39 1 6.8390 8.5692 0.0213 40 1 8.2260 7.9367 0.9435 41 1 6.8304 6.1646 1.9043 42 1 6.6683 6.1254 0.1319 43 1 7.2040 1.5236 0.0020 44 1 5.8650 0.7598 0.8915 45 1 5.8658 0.7585 -0.8885 46 1 4.0159 0.3689 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190144026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:01 Heat of formation + Delta-G solvation = -136.775663 kcal Electronic energy + Delta-G solvation = -29510.619233 eV Core-core repulsion = 25365.941710 eV Total energy + Delta-G solvation = -4144.677523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08295 -39.53639 -39.04178 -38.26035 -36.55044 -35.48874 -33.55419 -31.66005 -30.57373 -30.06714 -29.57606 -27.83077 -27.57847 -26.88577 -23.69460 -22.43154 -22.02027 -21.40375 -20.19240 -19.52764 -19.34458 -17.57721 -17.49659 -17.27059 -16.72686 -16.34038 -15.91849 -15.88430 -15.55440 -15.21726 -14.93496 -14.44018 -14.32586 -14.18087 -13.62456 -13.07578 -13.02278 -12.86031 -12.75191 -12.62716 -12.16131 -11.99628 -11.95717 -11.90165 -11.60898 -11.50864 -11.19795 -10.92378 -10.75570 -10.72859 -10.60781 -10.13295 -9.96164 -9.68784 -9.52401 -8.91808 -8.79146 -8.76376 -8.43017 -8.39663 -8.22111 -6.05975 -3.96023 0.81747 1.00405 2.66364 2.96604 2.99128 3.17378 3.33363 3.39199 3.41970 3.71624 3.95173 4.43381 4.61211 4.64888 4.74361 4.75006 4.82474 4.87886 4.94089 5.02622 5.07772 5.17903 5.22602 5.31981 5.60515 5.79466 5.85503 5.93728 5.99242 6.05589 6.30151 6.56511 6.58551 6.80715 6.81935 6.88170 6.97962 7.03703 7.05305 7.13751 7.33127 7.36700 7.49832 7.69904 7.77376 7.83727 8.05442 8.43428 8.67047 9.00700 9.59352 11.03808 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002894 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.393780 B = 9672.012730 C =10495.105048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.194 3.806 4 C -0.275 4.275 5 C 0.220 3.780 6 O -0.487 6.487 7 C -0.220 4.220 8 C 0.579 3.421 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.155 3.845 12 H 0.078 0.922 13 C -0.114 4.114 14 C 0.014 3.986 15 C -0.488 4.488 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.274 1.274 22 C -0.009 4.009 23 C -0.112 4.112 24 C 0.216 3.784 25 O -0.297 6.297 26 C 0.024 3.976 27 C -0.257 4.257 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.402 0.598 33 H 0.394 0.606 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.006 0.994 37 H 0.060 0.940 38 H 0.264 0.736 39 H 0.020 0.980 40 H 0.025 0.975 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 -22.132 -6.782 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.148 3.852 4 C -0.295 4.295 5 C 0.174 3.826 6 O -0.299 6.299 7 C -0.224 4.224 8 C 0.364 3.636 9 O -0.419 6.419 10 N -0.356 5.356 11 C 0.053 3.947 12 H 0.096 0.904 13 C -0.152 4.152 14 C -0.024 4.024 15 C -0.507 4.507 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.047 4.047 23 C -0.151 4.151 24 C 0.168 3.832 25 O -0.208 6.208 26 C -0.070 4.070 27 C -0.276 4.276 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.261 0.739 33 H 0.227 0.773 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.124 0.876 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.005 -21.673 -6.770 25.684 hybrid contribution 0.601 -0.509 -0.164 0.805 sum -11.404 -22.182 -6.934 25.888 Atomic orbital electron populations 1.23145 0.77745 1.04222 1.01904 1.86038 1.21948 1.26566 1.87859 1.18479 0.91239 0.83899 0.91620 1.21228 1.00890 0.91154 1.16204 1.17652 0.86672 0.85685 0.92583 1.84704 1.71204 1.39775 1.34181 1.19551 0.92816 0.93285 1.16773 1.17502 0.77964 0.83663 0.84485 1.90787 1.54367 1.65432 1.31338 1.46347 1.59674 1.22063 1.07562 1.21048 0.92608 0.81271 0.99803 0.90431 1.21928 0.97927 1.00449 0.94933 1.19332 0.94016 0.90243 0.98819 1.20053 0.91824 1.29117 1.09698 1.24829 0.98550 0.94722 0.94535 1.69822 1.34224 1.32482 1.16401 0.86655 0.85179 0.78226 0.78011 1.19999 1.21941 1.20011 1.19596 0.95176 0.92463 0.97437 1.21882 0.94382 0.99481 0.99356 1.18289 0.82893 0.91338 0.90678 1.86192 1.14528 1.33041 1.87059 1.23201 0.97377 0.84822 1.01635 1.20259 0.92544 0.97453 1.17351 0.92140 0.92254 0.87962 0.84122 0.73908 0.77271 0.94516 0.92766 0.97560 0.92124 0.92583 0.96168 0.95692 0.93076 0.94331 0.87635 0.92119 0.92197 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.80 10.48 -18.88 -0.20 -3.00 16 3 C 0.19 2.03 6.69 -39.11 -0.26 1.77 16 4 C -0.28 -2.83 8.95 -39.33 -0.35 -3.18 16 5 C 0.22 2.77 6.71 -38.75 -0.26 2.51 16 6 O -0.49 -5.79 12.95 -18.69 -0.24 -6.03 16 7 C -0.22 -3.29 5.65 -104.71 -0.59 -3.88 16 8 C 0.58 10.65 6.26 -12.71 -0.08 10.57 16 9 O -0.54 -11.86 16.77 5.23 0.09 -11.77 16 10 N -0.71 -12.80 5.07 -55.06 -0.28 -13.08 16 11 C 0.16 3.25 2.35 -67.98 -0.16 3.09 16 12 H 0.08 1.77 7.58 -51.93 -0.39 1.38 16 13 C -0.11 -2.44 5.40 -26.63 -0.14 -2.58 16 14 C 0.01 0.35 5.96 -27.48 -0.16 0.18 16 15 C -0.49 -13.14 5.51 -98.92 -0.55 -13.68 16 16 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 17 N -0.89 -25.87 12.73 55.43 0.71 -25.16 16 18 Si 0.89 21.78 26.80 -169.99 -4.56 17.22 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.01 -0.21 5.59 -27.48 -0.15 -0.37 16 23 C -0.11 -2.50 5.50 -26.64 -0.15 -2.65 16 24 C 0.22 2.91 6.69 -38.74 -0.26 2.65 16 25 O -0.30 -4.09 9.94 -18.67 -0.19 -4.28 16 26 C 0.02 0.21 9.81 101.05 0.99 1.20 16 27 C -0.26 -2.82 8.96 -39.33 -0.35 -3.17 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.06 0.26 7.63 -51.93 -0.40 -0.14 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 1.10 6.25 -52.49 -0.33 0.77 16 32 H 0.40 3.21 9.06 45.56 0.41 3.63 16 33 H 0.39 6.29 8.58 -40.82 -0.35 5.94 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.06 1.65 7.08 -51.93 -0.37 1.28 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.60 5.17 -51.93 -0.27 0.33 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.43 7.66 -51.92 -0.40 0.03 16 45 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 46 H 0.14 1.26 6.28 -52.49 -0.33 0.94 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.39 375.41 -6.32 -40.72 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.73 Total: 4.13 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.58 Total: -4.40 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.43 Total: -38.24 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.54 Total: -25.08 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.56 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.39 -6.32 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190144026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.059 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds