Wall clock time and date at job start Tue Mar 31 2020 19:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35725 * 117.00109 * 2 1 4 4 C 1.38893 * 119.81622 * 359.72681 * 3 2 1 5 5 C 1.38268 * 120.18010 * 179.76194 * 4 3 2 6 6 O 1.35663 * 120.09645 * 180.27458 * 5 4 3 7 7 C 1.40420 * 119.81661 * 0.51077 * 5 4 3 8 8 C 1.47016 * 120.18310 * 179.76589 * 7 5 4 9 9 O 1.21649 * 119.99922 * 269.97917 * 8 7 5 10 10 N 1.34771 * 119.99716 * 89.97324 * 8 7 5 11 11 C 1.46506 * 119.99996 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.41096 * 35.14708 * 11 10 8 13 13 C 1.52952 * 109.41260 * 155.00157 * 11 10 8 14 14 C 1.53238 * 109.40355 * 183.70760 * 13 11 10 15 15 C 1.51266 * 108.53470 * 305.37590 * 14 13 11 16 16 C 1.37884 * 120.84782 * 231.32418 * 15 14 13 17 17 N 1.31513 * 120.00013 * 0.02562 * 16 15 14 18 18 Si 1.86799 * 119.99797 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47207 * 60.00263 * 18 16 15 20 20 H 1.48500 * 109.46857 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47126 * 299.99769 * 18 16 15 22 22 C 1.51268 * 118.30499 * 51.34868 * 15 14 13 23 23 C 1.52953 * 109.41727 * 275.35858 * 11 10 8 24 24 C 1.40387 * 119.64071 * 359.74127 * 7 5 4 25 25 O 1.35655 * 120.09226 * 180.02562 * 24 7 5 26 26 C 1.42907 * 117.00040 * 179.97438 * 25 24 7 27 27 C 1.38316 * 119.81084 * 0.02562 * 24 7 5 28 28 H 1.08998 * 109.46946 * 300.00201 * 1 2 3 29 29 H 1.09004 * 109.47453 * 59.99457 * 1 2 3 30 30 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.90933 * 0.02562 * 4 3 2 32 32 H 0.96701 * 113.99668 * 270.24334 * 6 5 4 33 33 H 0.97002 * 120.00551 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.48575 * 303.68923 * 13 11 10 35 35 H 1.09003 * 109.48659 * 63.71766 * 13 11 10 36 36 H 1.08996 * 109.62411 * 65.09048 * 14 13 11 37 37 H 1.09001 * 109.62728 * 185.46767 * 14 13 11 38 38 H 0.96999 * 120.00381 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.62500 * 68.35828 * 22 15 14 40 40 H 1.08994 * 109.62747 * 188.74813 * 22 15 14 41 41 H 1.09000 * 109.48712 * 296.27435 * 23 11 10 42 42 H 1.09012 * 109.48160 * 56.31204 * 23 11 10 43 43 H 1.08992 * 109.47130 * 180.02562 * 26 25 24 44 44 H 1.09007 * 109.46177 * 299.99917 * 26 25 24 45 45 H 1.09001 * 109.47377 * 59.99368 * 26 25 24 46 46 H 1.08002 * 119.90589 * 179.97438 * 27 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2850 2.3717 -0.0057 5 6 1.9048 3.6077 -0.0008 6 8 1.1607 4.7420 -0.0008 7 6 3.3069 3.6856 -0.0008 8 6 3.9744 4.9955 -0.0008 9 8 4.2508 5.5373 -1.0543 10 7 4.2798 5.5960 1.1664 11 6 4.9455 6.9011 1.1665 12 1 4.5834 7.4925 0.3255 13 6 4.6326 7.6313 2.4735 14 6 5.2519 9.0324 2.4348 15 6 6.7282 8.8975 2.1340 16 6 7.6708 9.5157 2.9280 17 7 7.2907 10.2335 3.9624 18 14 9.4878 9.3338 2.5343 19 1 9.7560 9.8697 1.1756 20 1 10.2882 10.0897 3.5309 21 1 9.8635 7.8980 2.5833 22 6 7.1439 8.0675 0.9397 23 6 6.4560 6.7015 1.0327 24 6 4.0678 2.5058 -0.0004 25 8 5.4228 2.5704 0.0001 26 6 6.1315 1.3295 0.0012 27 6 3.4320 1.2775 -0.0004 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2068 2.3101 -0.0098 32 1 0.9448 5.0707 -0.8843 33 1 4.0596 5.1639 2.0065 34 1 3.5525 7.7144 2.5940 35 1 5.0499 7.0723 3.3112 36 1 4.7718 9.6234 1.6548 37 1 5.1150 9.5201 3.4000 38 1 7.9539 10.6681 4.5212 39 1 6.8390 8.5692 0.0213 40 1 8.2260 7.9367 0.9435 41 1 6.8304 6.1646 1.9043 42 1 6.6683 6.1254 0.1319 43 1 7.2040 1.5236 0.0020 44 1 5.8650 0.7598 0.8915 45 1 5.8658 0.7585 -0.8885 46 1 4.0159 0.3689 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190144026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:00 Heat of formation + Delta-G solvation = -163.014241 kcal Electronic energy + Delta-G solvation = -29511.757023 eV Core-core repulsion = 25365.941710 eV Total energy + Delta-G solvation = -4145.815313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00945 -40.63959 -40.03495 -39.26840 -38.28529 -36.33643 -35.34729 -33.47181 -31.69287 -31.44019 -30.87716 -29.11162 -28.20213 -28.08638 -24.93032 -23.68554 -23.33222 -23.18915 -21.54775 -21.28703 -20.26375 -18.85836 -18.30934 -18.23671 -17.79849 -17.49843 -17.34602 -16.88592 -16.48954 -16.42985 -16.08558 -15.90023 -15.52718 -15.36338 -15.01307 -14.70224 -14.52900 -14.11346 -14.06068 -13.90510 -13.53814 -13.38059 -13.35841 -12.79410 -12.66394 -12.64862 -12.58154 -12.47813 -12.21156 -12.12981 -12.01473 -11.84245 -11.60678 -11.48596 -11.11686 -10.81532 -10.66487 -10.54587 -9.91674 -9.61926 -9.29553 -8.18167 -6.12096 -0.07317 0.14688 1.38931 1.40087 1.48132 1.58740 1.94209 2.16133 2.32958 2.40249 2.44346 3.09798 3.12569 3.69890 3.90370 3.96215 4.02250 4.09345 4.11947 4.19021 4.36754 4.38479 4.42183 4.43475 4.47877 4.68194 4.71501 4.74442 4.78798 4.82573 4.94503 5.00143 5.05050 5.07756 5.14217 5.18515 5.22107 5.24226 5.52834 5.56452 5.67129 5.74792 5.80712 6.12434 6.25880 6.34111 6.59532 6.60696 6.92290 7.25040 7.45746 8.92610 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.002894 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.393780 B = 9672.012730 C =10495.105048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.317 6.317 3 C 0.202 3.798 4 C -0.267 4.267 5 C 0.220 3.780 6 O -0.498 6.498 7 C -0.254 4.254 8 C 0.584 3.416 9 O -0.584 6.584 10 N -0.702 5.702 11 C 0.167 3.833 12 H 0.057 0.943 13 C -0.100 4.100 14 C 0.010 3.990 15 C -0.501 4.501 16 C 0.027 3.973 17 N -0.927 5.927 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.265 1.265 22 C -0.010 4.010 23 C -0.103 4.103 24 C 0.209 3.791 25 O -0.329 6.329 26 C 0.015 3.985 27 C -0.256 4.256 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.168 0.832 32 H 0.417 0.583 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.055 0.945 36 H -0.002 1.002 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.015 0.985 40 H 0.028 0.972 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -25.152 -7.100 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.155 3.845 4 C -0.286 4.286 5 C 0.173 3.827 6 O -0.312 6.312 7 C -0.258 4.258 8 C 0.371 3.629 9 O -0.465 6.465 10 N -0.350 5.350 11 C 0.063 3.937 12 H 0.075 0.925 13 C -0.138 4.138 14 C -0.028 4.028 15 C -0.520 4.520 16 C -0.171 4.171 17 N -0.566 5.566 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.190 1.190 22 C -0.048 4.048 23 C -0.142 4.142 24 C 0.161 3.839 25 O -0.242 6.242 26 C -0.079 4.079 27 C -0.275 4.275 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.185 0.815 32 H 0.278 0.722 33 H 0.242 0.758 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.043 -24.730 -7.086 28.842 hybrid contribution 0.791 0.351 -0.101 0.871 sum -12.252 -24.379 -7.187 28.215 Atomic orbital electron populations 1.23499 0.75615 1.06181 1.02839 1.86051 1.24104 1.25600 1.87226 1.18587 0.91242 0.84559 0.90123 1.21411 1.02185 0.90033 1.14978 1.17745 0.85872 0.86611 0.92449 1.84659 1.70963 1.39953 1.35652 1.19430 0.93916 0.91745 1.20741 1.18000 0.76943 0.84502 0.83479 1.90749 1.56091 1.66913 1.32718 1.46150 1.59356 1.21008 1.08486 1.20664 0.91950 0.82536 0.98548 0.92484 1.21698 0.98901 0.98006 0.95199 1.19288 0.94039 0.92341 0.97086 1.20560 0.92622 1.28750 1.10083 1.25533 1.02254 0.94702 0.94643 1.69936 1.35321 1.33805 1.17551 0.85844 0.80957 0.78627 0.77886 1.19597 1.21631 1.19020 1.19598 0.95641 0.93354 0.96211 1.21746 0.95127 0.97968 0.99328 1.18363 0.82927 0.91618 0.90961 1.86140 1.15003 1.35832 1.87228 1.23495 0.97440 0.83671 1.03246 1.20421 0.93157 0.97212 1.16692 0.91332 0.91129 0.85680 0.81483 0.72231 0.75845 0.92425 0.92612 0.98319 0.94564 0.92629 0.96698 0.95349 0.92826 0.94437 0.86837 0.90380 0.90640 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.32 -4.60 10.48 -90.47 -0.95 -5.55 16 3 C 0.20 3.64 6.69 22.57 0.15 3.79 16 4 C -0.27 -4.76 8.95 22.43 0.20 -4.56 16 5 C 0.22 5.20 6.71 22.81 0.15 5.36 16 6 O -0.50 -11.23 12.95 -89.79 -1.16 -12.40 16 7 C -0.25 -7.43 5.65 -19.92 -0.11 -7.55 16 8 C 0.58 21.52 6.26 86.55 0.54 22.06 16 9 O -0.58 -26.09 16.77 -4.18 -0.07 -26.16 16 10 N -0.70 -25.14 5.07 -446.34 -2.26 -27.40 16 11 C 0.17 7.00 2.35 44.96 0.11 7.11 16 12 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 13 C -0.10 -4.25 5.40 30.66 0.17 -4.09 16 14 C 0.01 0.54 5.96 30.11 0.18 0.72 16 15 C -0.50 -27.26 5.51 -16.17 -0.09 -27.35 16 16 C 0.03 1.54 5.46 84.66 0.46 2.00 16 17 N -0.93 -54.75 12.73 21.45 0.27 -54.47 16 18 Si 0.94 44.63 26.80 68.60 1.84 46.47 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 C -0.01 -0.49 5.59 30.11 0.17 -0.32 16 23 C -0.10 -4.57 5.50 30.66 0.17 -4.40 16 24 C 0.21 5.41 6.69 22.81 0.15 5.56 16 25 O -0.33 -8.86 9.94 -89.71 -0.89 -9.75 16 26 C 0.02 0.24 9.81 113.37 1.11 1.35 16 27 C -0.26 -5.03 8.96 22.44 0.20 -4.83 16 28 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 29 H 0.07 0.34 7.63 -2.38 -0.02 0.32 16 30 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.17 2.00 6.25 -2.91 -0.02 1.98 16 32 H 0.42 6.27 9.06 -74.06 -0.67 5.60 16 33 H 0.41 12.63 8.58 -92.71 -0.80 11.83 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.04 2.02 7.08 -2.39 -0.02 2.00 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.03 1.35 5.17 -2.39 -0.01 1.34 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 0.92 7.66 -2.38 -0.02 0.90 16 45 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 46 H 0.16 2.41 6.28 -2.91 -0.02 2.39 16 Total: -1.00 -75.10 375.41 1.02 -74.09 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.43 Total: 19.13 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 4.67 Total: -3.96 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.99 Total: -81.87 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -3.07 Total: -53.85 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.84 Total: 46.47 kcal Total: -75.10 1.02 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190144026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.929 kcal (2) G-P(sol) polarization free energy of solvation -75.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds