Wall clock time and date at job start Tue Mar 31 2020 18:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35664 * 117.00326 * 2 1 4 4 C 1.39277 * 119.82892 * 0.02562 * 3 2 1 5 5 C 1.36432 * 120.40867 * 179.76030 * 4 3 2 6 6 C 1.40179 * 120.05092 * 0.47597 * 5 4 3 7 7 C 1.46496 * 120.16161 * 179.78559 * 6 5 4 8 8 O 1.21332 * 119.99859 * 179.72045 * 7 6 5 9 9 C 1.50697 * 119.99813 * 359.44258 * 7 6 5 10 10 O 1.42907 * 109.46611 * 180.02562 * 9 7 6 11 11 C 1.42905 * 113.99645 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.88204 * 327.57008 * 11 10 9 13 13 C 1.55156 * 111.00202 * 203.65091 * 11 10 9 14 14 C 1.54320 * 102.94117 * 206.42528 * 13 11 10 15 15 N 1.47020 * 107.27453 * 22.18840 * 14 13 11 16 16 C 1.36931 * 125.65096 * 181.02983 * 15 14 13 17 17 H 1.08003 * 120.00278 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00088 * 0.03745 * 16 15 14 19 19 N 1.31616 * 119.99638 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47344 * 90.00143 * 20 18 16 22 22 H 1.48499 * 109.47230 * 210.00229 * 20 18 16 23 23 H 1.48499 * 109.47264 * 330.00010 * 20 18 16 24 24 C 1.47427 * 108.70177 * 1.06338 * 15 14 13 25 25 C 1.40644 * 119.67135 * 359.50617 * 6 5 4 26 26 O 1.35604 * 120.20005 * 180.23213 * 25 6 5 27 27 C 1.42904 * 117.00003 * 180.02562 * 26 25 6 28 28 C 1.38423 * 119.59899 * 0.25450 * 25 6 5 29 29 H 1.08994 * 109.47197 * 60.00480 * 1 2 3 30 30 H 1.09001 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47395 * 300.00037 * 1 2 3 32 32 H 1.08001 * 119.80010 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.97339 * 180.25453 * 5 4 3 34 34 H 1.08993 * 109.47294 * 300.00059 * 9 7 6 35 35 H 1.09001 * 109.47048 * 60.00503 * 9 7 6 36 36 H 1.09002 * 110.72145 * 324.78507 * 13 11 10 37 37 H 1.09001 * 110.72442 * 88.05611 * 13 11 10 38 38 H 1.09006 * 109.87633 * 262.77425 * 14 13 11 39 39 H 1.08996 * 110.01462 * 141.68261 * 14 13 11 40 40 H 0.97005 * 119.99968 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36594 * 217.03367 * 24 15 14 42 42 H 1.08993 * 110.36901 * 94.70812 * 24 15 14 43 43 H 1.08998 * 109.47218 * 59.99389 * 27 26 25 44 44 H 1.08993 * 109.46943 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.46887 * 300.00007 * 27 26 25 46 46 H 1.08000 * 120.03685 * 179.97438 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2829 2.3746 0.0005 5 6 1.8901 3.5964 0.0055 6 6 3.2890 3.6851 0.0000 7 6 3.9435 4.9958 0.0005 8 8 5.1546 5.0691 0.0008 9 6 3.1124 6.2528 -0.0057 10 8 3.9737 7.3932 -0.0045 11 6 3.2823 8.6438 -0.0095 12 1 2.3441 8.5669 -0.5592 13 6 4.1766 9.7714 -0.5893 14 6 3.6123 11.0404 0.0835 15 7 2.9141 10.6133 1.3049 16 6 2.2564 11.4380 2.1780 17 1 1.7730 11.0250 3.0510 18 6 2.2108 12.8051 1.9409 19 7 2.7993 13.3084 0.8767 20 14 1.3142 13.9302 3.1324 21 1 2.2583 14.3948 4.1802 22 1 0.7757 15.1022 2.3964 23 1 0.1958 13.1880 3.7676 24 6 3.0401 9.1502 1.4343 25 6 4.0612 2.5096 -0.0001 26 8 5.4153 2.5829 -0.0007 27 6 6.1320 1.3466 -0.0013 28 6 3.4306 1.2773 -0.0001 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2048 2.3111 0.0014 33 1 1.2924 4.4959 0.0100 34 1 2.4875 6.2709 -0.8986 35 1 2.4794 6.2743 0.8814 36 1 5.2192 9.6184 -0.3106 37 1 4.0704 9.8294 -1.6725 38 1 2.9127 11.5366 -0.5892 39 1 4.4252 11.7198 0.3396 40 1 2.7671 14.2636 0.7108 41 1 2.1207 8.7244 1.8364 42 1 3.8870 8.8972 2.0720 43 1 5.8692 0.7748 -0.8913 44 1 7.2032 1.5477 -0.0013 45 1 5.8700 0.7744 0.8886 46 1 4.0167 0.3702 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204754513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:08 Heat of formation + Delta-G solvation = -89.257390 kcal Electronic energy + Delta-G solvation = -28301.570267 eV Core-core repulsion = 24158.953291 eV Total energy + Delta-G solvation = -4142.616976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09193 -39.63840 -38.95332 -37.88723 -36.76535 -35.66322 -32.20674 -31.69497 -30.57766 -29.36326 -28.60943 -27.71463 -27.31655 -26.55229 -24.28131 -23.65087 -22.28638 -20.33683 -20.25963 -19.89780 -19.11332 -17.32984 -17.11843 -16.77894 -16.54027 -16.44883 -16.22494 -15.94881 -15.43521 -15.19959 -15.04220 -14.64078 -14.40676 -14.09492 -13.55795 -13.47429 -13.28680 -13.05884 -12.88368 -12.79917 -12.51580 -12.17194 -11.99879 -11.92281 -11.86769 -11.55443 -11.43112 -11.08342 -10.95011 -10.89384 -10.68170 -10.22209 -10.08456 -9.75054 -9.68628 -9.44246 -9.11020 -9.06351 -8.56850 -8.50171 -6.80542 -5.68318 -3.02248 0.47737 0.98818 2.34931 2.61249 2.94716 3.42127 3.42260 3.45104 3.48280 3.49741 4.23142 4.43813 4.53109 4.55475 4.59389 4.65904 4.65968 4.84231 4.84856 4.96706 5.01846 5.06364 5.16887 5.22676 5.28347 5.31338 5.46870 5.53403 5.59610 5.68108 5.79949 5.80689 5.86723 5.89549 6.05297 6.32293 6.49562 6.60107 6.72486 6.74816 6.76362 7.00463 7.54550 7.58644 7.66527 7.76891 7.86393 8.28571 9.24375 9.84536 10.50708 11.43412 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002166 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.440746 B =12922.119282 C =13991.146349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.196 3.804 4 C -0.255 4.255 5 C 0.004 3.996 6 C -0.235 4.235 7 C 0.394 3.606 8 O -0.417 6.417 9 C 0.019 3.981 10 O -0.359 6.359 11 C 0.069 3.931 12 H 0.068 0.932 13 C -0.137 4.137 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.117 3.883 25 C 0.224 3.776 26 O -0.278 6.278 27 C 0.019 3.981 28 C -0.262 4.262 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -29.659 -4.809 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.149 3.851 4 C -0.274 4.274 5 C -0.014 4.014 6 C -0.237 4.237 7 C 0.269 3.731 8 O -0.289 6.289 9 C -0.059 4.059 10 O -0.277 6.277 11 C 0.011 3.989 12 H 0.086 0.914 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.010 4.010 25 C 0.175 3.825 26 O -0.188 6.188 27 C -0.076 4.076 28 C -0.281 4.281 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.448 -29.432 -4.795 29.920 hybrid contribution -1.201 0.406 0.633 1.417 sum -3.649 -29.026 -4.162 29.549 Atomic orbital electron populations 1.23173 0.77518 1.04369 1.02005 1.86021 1.22149 1.26926 1.87416 1.18965 0.91505 0.84323 0.90263 1.20880 1.00628 0.91927 1.13985 1.20866 0.92234 0.98087 0.90207 1.19760 0.93407 0.92749 1.17751 1.21822 0.89490 0.88178 0.73570 1.90597 1.15707 1.88860 1.33741 1.22700 0.93992 0.86929 1.02251 1.88023 1.31972 1.12648 1.95062 1.23510 0.95156 0.82368 0.97866 0.91410 1.22973 0.99611 0.95407 0.99506 1.21176 0.95751 0.90450 0.87246 1.44358 1.62846 1.00119 1.25885 1.19061 1.26264 0.88009 1.02229 0.90412 1.24821 1.00900 0.96699 0.98146 1.69962 1.48003 1.11690 1.27340 0.86095 0.79129 0.80417 0.79968 1.21585 1.21679 1.20723 1.21949 0.98295 0.86637 0.94096 1.18876 0.83151 0.91950 0.88515 1.86371 1.14211 1.32189 1.86028 1.23226 0.97471 0.85370 1.01491 1.20343 0.92675 0.97541 1.17548 0.92077 0.87923 0.92039 0.84535 0.83879 0.90355 0.90136 0.91296 0.91767 0.93349 0.93505 0.93719 0.94489 0.95334 0.92316 0.87653 0.92298 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.80 101.05 0.99 1.09 16 2 O -0.31 -2.44 10.48 -18.69 -0.20 -2.63 16 3 C 0.20 1.74 6.69 -39.01 -0.26 1.48 16 4 C -0.26 -2.00 8.96 -39.85 -0.36 -2.36 16 5 C 0.00 0.04 9.41 -39.50 -0.37 -0.33 16 6 C -0.23 -2.81 5.88 -104.93 -0.62 -3.42 16 7 C 0.39 5.83 7.17 -30.98 -0.22 5.61 16 8 O -0.42 -7.80 15.30 -24.77 -0.38 -8.18 16 9 C 0.02 0.26 4.90 36.00 0.18 0.44 16 10 O -0.36 -6.63 9.69 -55.14 -0.53 -7.16 16 11 C 0.07 1.33 3.49 -24.58 -0.09 1.24 16 12 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 13 C -0.14 -2.81 6.69 -24.90 -0.17 -2.97 16 14 C 0.18 4.51 5.38 -3.07 -0.02 4.49 16 15 N -0.60 -16.06 3.39 -170.08 -0.58 -16.64 16 16 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.53 10.31 55.49 0.57 -26.96 16 20 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.12 2.58 6.97 -2.53 -0.02 2.57 16 25 C 0.22 2.62 6.70 -38.61 -0.26 2.37 16 26 O -0.28 -3.47 8.57 -40.45 -0.35 -3.82 16 27 C 0.02 0.14 9.81 101.05 0.99 1.14 16 28 C -0.26 -2.50 8.97 -39.33 -0.35 -2.85 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.20 7.64 -51.93 -0.40 -0.20 16 32 H 0.14 0.71 6.26 -52.49 -0.33 0.38 16 33 H 0.14 0.93 7.03 -52.49 -0.37 0.56 16 34 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 39 H 0.05 1.30 7.50 -51.93 -0.39 0.91 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 44 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 46 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -36.39 379.29 -8.31 -44.70 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.72 Total: -3.82 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.82 Total: 1.47 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.01 Total: -43.60 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.46 Total: -21.79 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.39 -8.31 -44.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204754513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.558 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds