Wall clock time and date at job start Tue Mar 31 2020 18:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35664 * 117.00326 * 2 1 4 4 C 1.39277 * 119.82892 * 0.02562 * 3 2 1 5 5 C 1.36432 * 120.40867 * 179.76030 * 4 3 2 6 6 C 1.40179 * 120.05092 * 0.47597 * 5 4 3 7 7 C 1.46496 * 120.16161 * 179.78559 * 6 5 4 8 8 O 1.21332 * 119.99859 * 179.72045 * 7 6 5 9 9 C 1.50697 * 119.99813 * 359.44258 * 7 6 5 10 10 O 1.42907 * 109.46611 * 180.02562 * 9 7 6 11 11 C 1.42905 * 113.99645 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.88204 * 327.57008 * 11 10 9 13 13 C 1.55156 * 111.00202 * 203.65091 * 11 10 9 14 14 C 1.54320 * 102.94117 * 206.42528 * 13 11 10 15 15 N 1.47020 * 107.27453 * 22.18840 * 14 13 11 16 16 C 1.36931 * 125.65096 * 181.02983 * 15 14 13 17 17 H 1.08003 * 120.00278 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00088 * 0.03745 * 16 15 14 19 19 N 1.31616 * 119.99638 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47344 * 90.00143 * 20 18 16 22 22 H 1.48499 * 109.47230 * 210.00229 * 20 18 16 23 23 H 1.48499 * 109.47264 * 330.00010 * 20 18 16 24 24 C 1.47427 * 108.70177 * 1.06338 * 15 14 13 25 25 C 1.40644 * 119.67135 * 359.50617 * 6 5 4 26 26 O 1.35604 * 120.20005 * 180.23213 * 25 6 5 27 27 C 1.42904 * 117.00003 * 180.02562 * 26 25 6 28 28 C 1.38423 * 119.59899 * 0.25450 * 25 6 5 29 29 H 1.08994 * 109.47197 * 60.00480 * 1 2 3 30 30 H 1.09001 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47395 * 300.00037 * 1 2 3 32 32 H 1.08001 * 119.80010 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.97339 * 180.25453 * 5 4 3 34 34 H 1.08993 * 109.47294 * 300.00059 * 9 7 6 35 35 H 1.09001 * 109.47048 * 60.00503 * 9 7 6 36 36 H 1.09002 * 110.72145 * 324.78507 * 13 11 10 37 37 H 1.09001 * 110.72442 * 88.05611 * 13 11 10 38 38 H 1.09006 * 109.87633 * 262.77425 * 14 13 11 39 39 H 1.08996 * 110.01462 * 141.68261 * 14 13 11 40 40 H 0.97005 * 119.99968 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36594 * 217.03367 * 24 15 14 42 42 H 1.08993 * 110.36901 * 94.70812 * 24 15 14 43 43 H 1.08998 * 109.47218 * 59.99389 * 27 26 25 44 44 H 1.08993 * 109.46943 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.46887 * 300.00007 * 27 26 25 46 46 H 1.08000 * 120.03685 * 179.97438 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2829 2.3746 0.0005 5 6 1.8901 3.5964 0.0055 6 6 3.2890 3.6851 0.0000 7 6 3.9435 4.9958 0.0005 8 8 5.1546 5.0691 0.0008 9 6 3.1124 6.2528 -0.0057 10 8 3.9737 7.3932 -0.0045 11 6 3.2823 8.6438 -0.0095 12 1 2.3441 8.5669 -0.5592 13 6 4.1766 9.7714 -0.5893 14 6 3.6123 11.0404 0.0835 15 7 2.9141 10.6133 1.3049 16 6 2.2564 11.4380 2.1780 17 1 1.7730 11.0250 3.0510 18 6 2.2108 12.8051 1.9409 19 7 2.7993 13.3084 0.8767 20 14 1.3142 13.9302 3.1324 21 1 2.2583 14.3948 4.1802 22 1 0.7757 15.1022 2.3964 23 1 0.1958 13.1880 3.7676 24 6 3.0401 9.1502 1.4343 25 6 4.0612 2.5096 -0.0001 26 8 5.4153 2.5829 -0.0007 27 6 6.1320 1.3466 -0.0013 28 6 3.4306 1.2773 -0.0001 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2048 2.3111 0.0014 33 1 1.2924 4.4959 0.0100 34 1 2.4875 6.2709 -0.8986 35 1 2.4794 6.2743 0.8814 36 1 5.2192 9.6184 -0.3106 37 1 4.0704 9.8294 -1.6725 38 1 2.9127 11.5366 -0.5892 39 1 4.4252 11.7198 0.3396 40 1 2.7671 14.2636 0.7108 41 1 2.1207 8.7244 1.8364 42 1 3.8870 8.8972 2.0720 43 1 5.8692 0.7748 -0.8913 44 1 7.2032 1.5477 -0.0013 45 1 5.8700 0.7744 0.8886 46 1 4.0167 0.3702 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204754513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:07 Heat of formation + Delta-G solvation = -112.252128 kcal Electronic energy + Delta-G solvation = -28302.567394 eV Core-core repulsion = 24158.953291 eV Total energy + Delta-G solvation = -4143.614103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81823 -40.46424 -39.99662 -39.32669 -37.49097 -37.30250 -34.18823 -32.50321 -31.30871 -31.14972 -29.67680 -28.73680 -28.17980 -27.64040 -26.22709 -24.43757 -22.97558 -22.06206 -21.88710 -21.05128 -19.75967 -18.97479 -18.21495 -17.86512 -17.43109 -17.27171 -17.08725 -16.69000 -16.63194 -16.44441 -16.17359 -15.83141 -15.74008 -15.37262 -14.92349 -14.70741 -14.33105 -14.06189 -13.87333 -13.84423 -13.74163 -13.49488 -13.23901 -13.08997 -12.91298 -12.72349 -12.55436 -12.46066 -12.25678 -12.10085 -12.01361 -11.97246 -11.76888 -11.68357 -11.43677 -10.71695 -10.55667 -10.52638 -9.74986 -9.23028 -8.92699 -7.84784 -5.22007 -0.31349 0.31786 1.42205 1.47321 1.50172 1.58698 2.06657 2.25977 2.37043 2.52552 2.67352 3.31318 3.35506 3.63379 3.77355 3.82786 3.95769 4.02743 4.06928 4.13324 4.18492 4.23535 4.31523 4.32637 4.39166 4.40055 4.42694 4.43904 4.53771 4.61715 4.69166 4.74144 4.79730 4.94697 4.97563 5.03360 5.06613 5.14319 5.22110 5.42588 5.44378 5.62405 5.72713 6.13462 6.18640 6.26063 6.34337 6.71498 7.08586 7.74743 8.39892 9.25917 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002166 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.440746 B =12922.119282 C =13991.146349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.199 3.801 4 C -0.251 4.251 5 C 0.013 3.987 6 C -0.264 4.264 7 C 0.396 3.604 8 O -0.474 6.474 9 C 0.010 3.990 10 O -0.381 6.381 11 C 0.090 3.910 12 H 0.094 0.906 13 C -0.128 4.128 14 C 0.188 3.812 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.086 0.914 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.983 3.017 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.113 3.887 25 C 0.208 3.792 26 O -0.312 6.312 27 C 0.012 3.988 28 C -0.270 4.270 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.007 0.993 40 H 0.248 0.752 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -31.825 -4.721 32.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.152 3.848 4 C -0.269 4.269 5 C -0.005 4.005 6 C -0.266 4.266 7 C 0.275 3.725 8 O -0.351 6.351 9 C -0.067 4.067 10 O -0.300 6.300 11 C 0.031 3.969 12 H 0.112 0.888 13 C -0.166 4.166 14 C 0.063 3.937 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.103 0.897 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.811 3.189 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.189 1.189 24 C -0.013 4.013 25 C 0.160 3.840 26 O -0.224 6.224 27 C -0.082 4.082 28 C -0.289 4.289 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.026 0.974 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.091 0.909 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.349 -31.657 -4.699 32.448 hybrid contribution -0.363 0.877 0.626 1.137 sum -5.712 -30.780 -4.073 31.569 Atomic orbital electron populations 1.23513 0.75408 1.06102 1.03116 1.86022 1.24326 1.26437 1.86878 1.19149 0.91443 0.85236 0.89015 1.21220 1.02144 0.91002 1.12535 1.21153 0.90915 0.99669 0.88801 1.19746 0.94802 0.91425 1.20588 1.22283 0.88905 0.89615 0.71654 1.90578 1.17815 1.89606 1.37084 1.23076 0.93833 0.84781 1.04995 1.88002 1.33518 1.13300 1.95134 1.23202 0.95555 0.82498 0.95599 0.88837 1.22819 0.99279 0.93845 1.00695 1.20904 0.93854 0.92022 0.86955 1.44668 1.62639 1.02095 1.25901 1.19489 1.26176 0.88777 1.02849 0.89667 1.25729 1.02078 0.98256 1.00016 1.70184 1.49331 1.11545 1.29090 0.85008 0.78167 0.78105 0.77606 1.21571 1.21891 1.18927 1.22099 0.98546 0.84440 0.96219 1.19129 0.83068 0.92786 0.89046 1.86325 1.15082 1.34699 1.86272 1.23465 0.97570 0.84366 1.02807 1.20463 0.93495 0.97216 1.17763 0.90834 0.86115 0.90938 0.81404 0.81231 0.86784 0.87765 0.91897 0.89111 0.95784 0.97435 0.94269 0.92542 0.96781 0.90874 0.86908 0.91021 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.80 113.37 1.11 1.17 16 2 O -0.32 -4.15 10.48 -89.80 -0.94 -5.09 16 3 C 0.20 3.03 6.69 22.64 0.15 3.19 16 4 C -0.25 -3.05 8.96 22.10 0.20 -2.85 16 5 C 0.01 0.19 9.41 22.32 0.21 0.40 16 6 C -0.26 -6.05 5.88 -20.07 -0.12 -6.17 16 7 C 0.40 11.57 7.17 27.84 0.20 11.76 16 8 O -0.47 -18.38 15.30 25.76 0.39 -17.99 16 9 C 0.01 0.24 4.90 71.23 0.35 0.59 16 10 O -0.38 -13.55 9.69 -129.95 -1.26 -14.80 16 11 C 0.09 3.29 3.49 31.99 0.11 3.41 16 12 H 0.09 2.97 7.90 -2.39 -0.02 2.95 16 13 C -0.13 -5.22 6.69 31.78 0.21 -5.01 16 14 C 0.19 9.73 5.38 86.73 0.47 10.19 16 15 N -0.63 -33.48 3.39 -692.00 -2.35 -35.82 16 16 C -0.24 -13.97 10.28 84.04 0.86 -13.10 16 17 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 18 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 19 N -0.95 -58.32 10.31 21.65 0.22 -58.10 16 20 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 C 0.11 4.88 6.97 86.85 0.61 5.49 16 25 C 0.21 4.85 6.70 22.90 0.15 5.00 16 26 O -0.31 -8.10 8.57 -68.17 -0.58 -8.68 16 27 C 0.01 0.18 9.81 113.37 1.11 1.29 16 28 C -0.27 -4.85 8.97 22.43 0.20 -4.65 16 29 H 0.07 0.17 7.65 -2.39 -0.02 0.15 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.07 0.19 7.64 -2.39 -0.02 0.17 16 32 H 0.17 0.93 6.26 -2.91 -0.02 0.91 16 33 H 0.17 1.47 7.03 -2.91 -0.02 1.45 16 34 H 0.11 2.09 8.06 -2.39 -0.02 2.07 16 35 H 0.10 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.02 1.34 7.38 -2.38 -0.02 1.32 16 39 H 0.01 0.43 7.50 -2.39 -0.02 0.42 16 40 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 44 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 46 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 Total: -1.00 -82.48 379.29 4.79 -77.69 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.99 Total: 7.42 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.29 Total: 7.24 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -2.13 Total: -93.92 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.39 Total: -46.57 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -82.48 4.79 -77.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204754513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.565 kcal (2) G-P(sol) polarization free energy of solvation -82.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds