Wall clock time and date at job start Tue Mar 31 2020 18:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35669 * 117.00200 * 2 1 4 4 C 1.39289 * 119.82556 * 0.02562 * 3 2 1 5 5 C 1.36425 * 120.40044 * 179.97438 * 4 3 2 6 6 C 1.40170 * 120.06314 * 0.02562 * 5 4 3 7 7 C 1.46491 * 120.16803 * 179.97438 * 6 5 4 8 8 O 1.21338 * 119.99808 * 180.02562 * 7 6 5 9 9 C 1.50694 * 119.99888 * 0.02562 * 7 6 5 10 10 O 1.42897 * 109.47034 * 179.97438 * 9 7 6 11 11 C 1.42908 * 114.00068 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.91216 * 32.44709 * 11 10 9 13 13 C 1.55152 * 111.00185 * 156.35256 * 11 10 9 14 14 C 1.54338 * 103.01921 * 153.38461 * 13 11 10 15 15 N 1.47024 * 107.26406 * 338.13863 * 14 13 11 16 16 C 1.36936 * 125.64802 * 178.85276 * 15 14 13 17 17 H 1.07997 * 120.00015 * 205.70062 * 16 15 14 18 18 C 1.38810 * 119.99782 * 25.69915 * 16 15 14 19 19 N 1.31628 * 119.99789 * 214.47366 * 18 16 15 20 20 Si 1.86792 * 120.00337 * 34.48312 * 18 16 15 21 21 H 1.48500 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47142 * 239.99823 * 20 18 16 23 23 H 1.48508 * 109.47417 * 119.99705 * 20 18 16 24 24 C 1.47425 * 108.70208 * 358.58720 * 15 14 13 25 25 C 1.40649 * 119.66594 * 0.26105 * 6 5 4 26 26 O 1.35601 * 120.20190 * 179.72703 * 25 6 5 27 27 C 1.42897 * 117.00415 * 179.97438 * 26 25 6 28 28 C 1.38428 * 119.60049 * 359.46070 * 25 6 5 29 29 H 1.08995 * 109.47575 * 60.00156 * 1 2 3 30 30 H 1.09006 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47115 * 299.99410 * 1 2 3 32 32 H 1.07996 * 119.79971 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.96282 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47357 * 59.99747 * 9 7 6 35 35 H 1.09004 * 109.47256 * 300.00056 * 9 7 6 36 36 H 1.09008 * 110.71893 * 271.93416 * 13 11 10 37 37 H 1.08993 * 110.72394 * 35.21468 * 13 11 10 38 38 H 1.08994 * 109.99330 * 218.66392 * 14 13 11 39 39 H 1.08998 * 109.78030 * 97.49215 * 14 13 11 40 40 H 0.97000 * 119.99944 * 5.09675 * 19 18 16 41 41 H 1.08996 * 110.36742 * 143.19781 * 24 15 14 42 42 H 1.09008 * 110.36423 * 265.40728 * 24 15 14 43 43 H 1.08997 * 109.47458 * 179.97438 * 27 26 25 44 44 H 1.08996 * 109.47431 * 300.00394 * 27 26 25 45 45 H 1.09006 * 109.47094 * 59.99678 * 27 26 25 46 46 H 1.08002 * 120.03522 * 180.25789 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2828 2.3747 0.0005 5 6 1.8899 3.5964 0.0011 6 6 3.2888 3.6853 0.0005 7 6 3.9432 4.9959 0.0005 8 8 5.1543 5.0693 -0.0004 9 6 3.1121 6.2530 0.0017 10 8 3.9733 7.3933 0.0021 11 6 3.2818 8.6439 0.0026 12 1 2.3416 8.5684 0.5489 13 6 4.1739 9.7723 0.5839 14 6 3.6167 11.0411 -0.0957 15 7 2.9185 10.6114 -1.3162 16 6 2.2642 11.4348 -2.1931 17 1 1.4600 11.0468 -2.8005 18 6 2.6347 12.7682 -2.3013 19 7 1.7236 13.6868 -2.5436 20 14 4.4261 13.2590 -2.1031 21 1 5.2445 12.0485 -1.8383 22 1 4.5575 14.2036 -0.9649 23 1 4.9003 13.9150 -3.3482 24 6 3.0451 9.1481 -1.4429 25 6 4.0610 2.5098 -0.0061 26 8 5.4151 2.5831 -0.0123 27 6 6.1318 1.3469 -0.0183 28 6 3.4305 1.2774 -0.0007 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2047 2.3112 0.0005 33 1 1.2921 4.4958 0.0019 34 1 2.4838 6.2723 0.8922 35 1 2.4824 6.2731 -0.8878 36 1 4.0635 9.8321 1.6668 37 1 5.2175 9.6190 0.3095 38 1 4.4336 11.7149 -0.3537 39 1 2.9179 11.5418 0.5743 40 1 0.7852 13.4432 -2.5733 41 1 2.1274 8.7216 -1.8479 42 1 3.8933 8.8943 -2.0787 43 1 7.2030 1.5480 -0.0233 44 1 5.8737 0.7729 0.8716 45 1 5.8653 0.7767 -0.9083 46 1 4.0167 0.3703 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204754515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:11 Heat of formation + Delta-G solvation = -87.857104 kcal Electronic energy + Delta-G solvation = -28375.421898 eV Core-core repulsion = 24232.865643 eV Total energy + Delta-G solvation = -4142.556255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13246 -39.68367 -39.04204 -38.07187 -36.80997 -35.87366 -32.44853 -31.77096 -30.62111 -29.67289 -28.70901 -27.80564 -27.65959 -26.78257 -23.88363 -23.53578 -22.31838 -20.67143 -20.22480 -20.14293 -19.15437 -17.51154 -17.37562 -16.99878 -16.69217 -16.48639 -16.33689 -15.98962 -15.58752 -15.29417 -15.23358 -14.71722 -14.65364 -14.08046 -13.69137 -13.50818 -13.34118 -13.18671 -12.96007 -12.91794 -12.76050 -12.35043 -12.12689 -12.09952 -11.95993 -11.88133 -11.47869 -11.30059 -11.12048 -10.97113 -10.75491 -10.51992 -10.22928 -9.55155 -9.50082 -9.28005 -9.20593 -9.11469 -8.54215 -8.30009 -6.95223 -6.36088 -3.23106 0.43318 0.94998 2.29414 2.58026 2.90974 3.36120 3.37927 3.53054 3.60075 3.76260 4.19110 4.36453 4.49541 4.54881 4.62191 4.63422 4.67420 4.81056 4.81238 4.93943 4.96836 5.01686 5.09617 5.12194 5.17668 5.19377 5.21911 5.31744 5.38363 5.55217 5.63355 5.64490 5.75282 5.83537 5.95521 6.01541 6.18526 6.34969 6.51803 6.66370 6.71536 6.72531 6.90634 6.96569 7.42286 7.69573 7.91780 8.40268 9.01414 9.61318 10.35489 11.06556 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002248 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.632330 B =12454.161761 C =13458.273106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.197 3.803 4 C -0.255 4.255 5 C 0.004 3.996 6 C -0.235 4.235 7 C 0.395 3.605 8 O -0.417 6.417 9 C 0.019 3.981 10 O -0.358 6.358 11 C 0.071 3.929 12 H 0.071 0.929 13 C -0.123 4.123 14 C 0.124 3.876 15 N -0.601 5.601 16 C -0.342 4.342 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 1.033 2.967 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.297 1.297 24 C 0.108 3.892 25 C 0.224 3.776 26 O -0.278 6.278 27 C 0.019 3.981 28 C -0.262 4.262 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.267 0.733 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -31.024 8.596 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.150 3.850 4 C -0.274 4.274 5 C -0.014 4.014 6 C -0.237 4.237 7 C 0.270 3.730 8 O -0.289 6.289 9 C -0.059 4.059 10 O -0.276 6.276 11 C 0.013 3.987 12 H 0.089 0.911 13 C -0.161 4.161 14 C 0.000 4.000 15 N -0.330 5.330 16 C -0.468 4.468 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.537 5.537 20 Si 0.863 3.137 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.224 1.224 24 C -0.018 4.018 25 C 0.176 3.824 26 O -0.188 6.188 27 C -0.076 4.076 28 C -0.281 4.281 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.780 -29.695 8.447 30.883 hybrid contribution -1.729 -1.512 -0.043 2.297 sum -0.949 -31.207 8.404 32.333 Atomic orbital electron populations 1.23178 0.77487 1.04404 1.02009 1.86025 1.22174 1.26900 1.87382 1.18972 0.91507 0.84336 0.90171 1.20883 1.00647 0.91921 1.13954 1.20854 0.92220 0.98088 0.90243 1.19731 0.93398 0.92695 1.17907 1.21796 0.89472 0.88157 0.73588 1.90601 1.15684 1.88853 1.33769 1.22717 0.93981 0.86803 1.02358 1.88009 1.31941 1.12574 1.95067 1.23434 0.94926 0.82485 0.97885 0.91147 1.22625 1.00093 0.93998 0.99412 1.21634 0.95497 0.94316 0.88601 1.44617 1.64233 1.01234 1.22919 1.19805 1.13148 0.92060 1.21818 0.91344 1.26058 1.05170 0.91535 0.97425 1.70877 1.02112 1.33650 1.47102 0.84330 0.78081 0.75121 0.76196 1.20322 1.21934 1.22441 1.22066 0.98610 0.87375 0.93714 1.18875 0.83155 0.91943 0.88474 1.86365 1.14206 1.32230 1.86011 1.23229 0.97465 0.85353 1.01517 1.20348 0.92682 0.97549 1.17519 0.92024 0.87891 0.92074 0.84513 0.83921 0.90284 0.90014 0.91045 0.90560 0.94816 0.94453 0.92313 0.94100 0.95109 0.87643 0.92300 0.92273 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.31 -2.38 10.48 -18.71 -0.20 -2.58 16 3 C 0.20 1.70 6.69 -39.01 -0.26 1.44 16 4 C -0.26 -1.94 8.96 -39.84 -0.36 -2.30 16 5 C 0.00 0.04 9.41 -39.51 -0.37 -0.33 16 6 C -0.24 -2.74 5.88 -104.94 -0.62 -3.36 16 7 C 0.39 5.66 7.17 -30.99 -0.22 5.44 16 8 O -0.42 -7.60 15.30 -24.77 -0.38 -7.98 16 9 C 0.02 0.25 4.90 36.00 0.18 0.43 16 10 O -0.36 -6.30 9.69 -55.14 -0.53 -6.84 16 11 C 0.07 1.28 3.49 -24.59 -0.09 1.20 16 12 H 0.07 1.14 7.90 -51.93 -0.41 0.73 16 13 C -0.12 -2.30 6.68 -24.89 -0.17 -2.46 16 14 C 0.12 2.83 6.03 -3.06 -0.02 2.81 16 15 N -0.60 -15.37 3.06 -170.07 -0.52 -15.89 16 16 C -0.34 -9.95 10.24 -15.06 -0.15 -10.11 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 18 C 0.00 0.05 5.29 -17.43 -0.09 -0.04 16 19 N -0.90 -28.03 13.70 55.49 0.76 -27.27 16 20 Si 1.03 26.76 26.22 -169.99 -4.46 22.30 16 21 H -0.28 -6.92 6.16 56.52 0.35 -6.57 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 24 C 0.11 2.35 6.97 -2.53 -0.02 2.33 16 25 C 0.22 2.57 6.70 -38.60 -0.26 2.31 16 26 O -0.28 -3.40 8.57 -40.44 -0.35 -3.74 16 27 C 0.02 0.14 9.81 101.05 0.99 1.13 16 28 C -0.26 -2.44 8.97 -39.33 -0.35 -2.79 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.18 7.64 -51.93 -0.40 -0.22 16 32 H 0.14 0.69 6.26 -52.49 -0.33 0.36 16 33 H 0.14 0.89 7.03 -52.49 -0.37 0.52 16 34 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.03 0.81 3.83 -51.93 -0.20 0.61 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 45 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 46 H 0.14 1.07 6.30 -52.49 -0.33 0.74 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -37.19 376.25 -7.47 -44.67 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -6.65 Total: -5.11 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.82 Total: -3.22 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.24 Total: -43.17 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.46 Total: -21.14 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -4.46 Total: 22.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.19 -7.47 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204754515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.191 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds