Wall clock time and date at job start Tue Mar 31 2020 18:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35669 * 117.00200 * 2 1 4 4 C 1.39289 * 119.82556 * 0.02562 * 3 2 1 5 5 C 1.36425 * 120.40044 * 179.97438 * 4 3 2 6 6 C 1.40170 * 120.06314 * 0.02562 * 5 4 3 7 7 C 1.46491 * 120.16803 * 179.97438 * 6 5 4 8 8 O 1.21338 * 119.99808 * 180.02562 * 7 6 5 9 9 C 1.50694 * 119.99888 * 0.02562 * 7 6 5 10 10 O 1.42897 * 109.47034 * 179.97438 * 9 7 6 11 11 C 1.42908 * 114.00068 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.91216 * 32.44709 * 11 10 9 13 13 C 1.55152 * 111.00185 * 156.35256 * 11 10 9 14 14 C 1.54338 * 103.01921 * 153.38461 * 13 11 10 15 15 N 1.47024 * 107.26406 * 338.13863 * 14 13 11 16 16 C 1.36936 * 125.64802 * 178.85276 * 15 14 13 17 17 H 1.07997 * 120.00015 * 205.70062 * 16 15 14 18 18 C 1.38810 * 119.99782 * 25.69915 * 16 15 14 19 19 N 1.31628 * 119.99789 * 214.47366 * 18 16 15 20 20 Si 1.86792 * 120.00337 * 34.48312 * 18 16 15 21 21 H 1.48500 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47142 * 239.99823 * 20 18 16 23 23 H 1.48508 * 109.47417 * 119.99705 * 20 18 16 24 24 C 1.47425 * 108.70208 * 358.58720 * 15 14 13 25 25 C 1.40649 * 119.66594 * 0.26105 * 6 5 4 26 26 O 1.35601 * 120.20190 * 179.72703 * 25 6 5 27 27 C 1.42897 * 117.00415 * 179.97438 * 26 25 6 28 28 C 1.38428 * 119.60049 * 359.46070 * 25 6 5 29 29 H 1.08995 * 109.47575 * 60.00156 * 1 2 3 30 30 H 1.09006 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47115 * 299.99410 * 1 2 3 32 32 H 1.07996 * 119.79971 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.96282 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47357 * 59.99747 * 9 7 6 35 35 H 1.09004 * 109.47256 * 300.00056 * 9 7 6 36 36 H 1.09008 * 110.71893 * 271.93416 * 13 11 10 37 37 H 1.08993 * 110.72394 * 35.21468 * 13 11 10 38 38 H 1.08994 * 109.99330 * 218.66392 * 14 13 11 39 39 H 1.08998 * 109.78030 * 97.49215 * 14 13 11 40 40 H 0.97000 * 119.99944 * 5.09675 * 19 18 16 41 41 H 1.08996 * 110.36742 * 143.19781 * 24 15 14 42 42 H 1.09008 * 110.36423 * 265.40728 * 24 15 14 43 43 H 1.08997 * 109.47458 * 179.97438 * 27 26 25 44 44 H 1.08996 * 109.47431 * 300.00394 * 27 26 25 45 45 H 1.09006 * 109.47094 * 59.99678 * 27 26 25 46 46 H 1.08002 * 120.03522 * 180.25789 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2828 2.3747 0.0005 5 6 1.8899 3.5964 0.0011 6 6 3.2888 3.6853 0.0005 7 6 3.9432 4.9959 0.0005 8 8 5.1543 5.0693 -0.0004 9 6 3.1121 6.2530 0.0017 10 8 3.9733 7.3933 0.0021 11 6 3.2818 8.6439 0.0026 12 1 2.3416 8.5684 0.5489 13 6 4.1739 9.7723 0.5839 14 6 3.6167 11.0411 -0.0957 15 7 2.9185 10.6114 -1.3162 16 6 2.2642 11.4348 -2.1931 17 1 1.4600 11.0468 -2.8005 18 6 2.6347 12.7682 -2.3013 19 7 1.7236 13.6868 -2.5436 20 14 4.4261 13.2590 -2.1031 21 1 5.2445 12.0485 -1.8383 22 1 4.5575 14.2036 -0.9649 23 1 4.9003 13.9150 -3.3482 24 6 3.0451 9.1481 -1.4429 25 6 4.0610 2.5098 -0.0061 26 8 5.4151 2.5831 -0.0123 27 6 6.1318 1.3469 -0.0183 28 6 3.4305 1.2774 -0.0007 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2047 2.3112 0.0005 33 1 1.2921 4.4958 0.0019 34 1 2.4838 6.2723 0.8922 35 1 2.4824 6.2731 -0.8878 36 1 4.0635 9.8321 1.6668 37 1 5.2175 9.6190 0.3095 38 1 4.4336 11.7149 -0.3537 39 1 2.9179 11.5418 0.5743 40 1 0.7852 13.4432 -2.5733 41 1 2.1274 8.7216 -1.8479 42 1 3.8933 8.8943 -2.0787 43 1 7.2030 1.5480 -0.0233 44 1 5.8737 0.7729 0.8716 45 1 5.8653 0.7767 -0.9083 46 1 4.0167 0.3703 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204754515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:10 Heat of formation + Delta-G solvation = -112.373904 kcal Electronic energy + Delta-G solvation = -28376.485027 eV Core-core repulsion = 24232.865643 eV Total energy + Delta-G solvation = -4143.619383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83903 -40.50499 -40.05031 -39.41813 -37.52914 -37.40150 -34.55168 -32.54969 -31.44106 -31.26631 -29.82532 -29.07286 -28.19599 -27.67012 -25.65063 -24.44824 -22.98887 -22.36304 -21.90890 -21.10464 -19.79050 -19.58887 -18.31617 -17.95966 -17.50554 -17.31042 -17.12631 -16.93372 -16.60788 -16.43826 -16.21413 -15.94260 -15.78922 -15.43926 -15.13971 -14.87821 -14.62279 -14.14732 -13.92312 -13.90279 -13.84696 -13.54615 -13.48146 -13.18972 -13.10562 -12.72996 -12.57241 -12.47918 -12.36723 -12.28053 -11.99615 -11.82569 -11.70421 -11.64158 -11.15591 -10.67039 -10.58253 -10.47327 -9.76963 -9.25069 -9.08180 -8.65557 -5.49292 -0.33610 0.29654 1.39685 1.44341 1.51261 1.72612 2.04774 2.21836 2.34855 2.52515 2.65105 2.93448 3.26702 3.54420 3.61685 3.73536 3.92116 3.93618 4.01132 4.09808 4.11617 4.19933 4.27382 4.31438 4.35119 4.36896 4.38309 4.41043 4.42003 4.51779 4.59569 4.68080 4.77983 4.80661 4.93119 4.94966 4.99859 5.02595 5.11467 5.19683 5.23310 5.40361 5.70333 6.13220 6.16539 6.19392 6.32187 6.68380 6.78952 7.45960 8.18527 8.75241 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002248 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.632330 B =12454.161761 C =13458.273106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.199 3.801 4 C -0.251 4.251 5 C 0.012 3.988 6 C -0.264 4.264 7 C 0.396 3.604 8 O -0.473 6.473 9 C 0.010 3.990 10 O -0.379 6.379 11 C 0.089 3.911 12 H 0.098 0.902 13 C -0.116 4.116 14 C 0.116 3.884 15 N -0.620 5.620 16 C -0.337 4.337 17 H 0.040 0.960 18 C -0.047 4.047 19 N -0.931 5.931 20 Si 1.077 2.923 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.295 1.295 24 C 0.103 3.897 25 C 0.208 3.792 26 O -0.312 6.312 27 C 0.012 3.988 28 C -0.270 4.270 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.257 0.743 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -33.112 10.127 34.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.152 3.848 4 C -0.269 4.269 5 C -0.006 4.006 6 C -0.266 4.266 7 C 0.276 3.724 8 O -0.349 6.349 9 C -0.066 4.066 10 O -0.297 6.297 11 C 0.031 3.969 12 H 0.116 0.884 13 C -0.153 4.153 14 C -0.009 4.009 15 N -0.349 5.349 16 C -0.465 4.465 17 H 0.058 0.942 18 C -0.246 4.246 19 N -0.571 5.571 20 Si 0.903 3.097 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.223 1.223 24 C -0.022 4.022 25 C 0.160 3.840 26 O -0.223 6.223 27 C -0.082 4.082 28 C -0.289 4.289 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.183 -31.832 9.993 33.364 hybrid contribution -1.590 -1.105 -0.554 2.014 sum -1.773 -32.936 9.439 34.308 Atomic orbital electron populations 1.23513 0.75413 1.06115 1.03093 1.86024 1.24318 1.26436 1.86867 1.19157 0.91465 0.85224 0.88997 1.21219 1.02130 0.91040 1.12559 1.21139 0.90966 0.99624 0.88876 1.19738 0.94752 0.91482 1.20606 1.22255 0.88912 0.89569 0.71698 1.90580 1.17736 1.89587 1.37036 1.23066 0.93815 0.84805 1.04939 1.87994 1.33410 1.13241 1.95082 1.23196 0.95900 0.82797 0.95049 0.88426 1.22596 0.99604 0.91961 1.01176 1.21773 0.94952 0.96385 0.87744 1.44721 1.64163 1.02670 1.23359 1.19695 1.12380 0.92698 1.21748 0.94218 1.27062 1.07794 0.91981 0.97731 1.70962 1.01828 1.34313 1.49977 0.83691 0.73895 0.75489 0.76589 1.19193 1.20574 1.22281 1.22204 0.98212 0.85262 0.96531 1.19128 0.83093 0.92767 0.89008 1.86319 1.15035 1.34705 1.86250 1.23467 0.97581 0.84362 1.02804 1.20469 0.93472 0.97257 1.17723 0.91003 0.86094 0.90811 0.81472 0.81320 0.86552 0.88149 0.87424 0.90995 0.95760 0.94482 0.93429 0.93527 0.96728 0.86861 0.90844 0.91076 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.80 113.37 1.11 1.17 16 2 O -0.32 -4.09 10.48 -89.86 -0.94 -5.04 16 3 C 0.20 2.98 6.69 22.64 0.15 3.14 16 4 C -0.25 -3.01 8.96 22.10 0.20 -2.81 16 5 C 0.01 0.17 9.41 22.32 0.21 0.38 16 6 C -0.26 -5.89 5.88 -20.07 -0.12 -6.00 16 7 C 0.40 11.16 7.17 27.84 0.20 11.36 16 8 O -0.47 -17.72 15.30 25.74 0.39 -17.32 16 9 C 0.01 0.25 4.90 71.23 0.35 0.60 16 10 O -0.38 -12.59 9.69 -129.95 -1.26 -13.85 16 11 C 0.09 2.98 3.49 31.98 0.11 3.09 16 12 H 0.10 2.76 7.90 -2.39 -0.02 2.74 16 13 C -0.12 -4.00 6.68 31.79 0.21 -3.78 16 14 C 0.12 5.08 6.03 86.73 0.52 5.60 16 15 N -0.62 -31.37 3.06 -691.97 -2.12 -33.49 16 16 C -0.34 -19.90 10.24 84.03 0.86 -19.04 16 17 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 18 C -0.05 -2.84 5.29 84.86 0.45 -2.39 16 19 N -0.93 -59.06 13.70 21.65 0.30 -58.77 16 20 Si 1.08 54.36 26.22 68.60 1.80 56.16 16 21 H -0.27 -12.83 6.16 99.48 0.61 -12.21 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 24 C 0.10 4.37 6.97 86.85 0.61 4.98 16 25 C 0.21 4.74 6.70 22.90 0.15 4.89 16 26 O -0.31 -7.86 8.57 -68.14 -0.58 -8.44 16 27 C 0.01 0.17 9.81 113.37 1.11 1.28 16 28 C -0.27 -4.74 8.97 22.43 0.20 -4.54 16 29 H 0.07 0.19 7.65 -2.39 -0.02 0.17 16 30 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.07 0.16 7.64 -2.39 -0.02 0.14 16 32 H 0.17 0.92 6.26 -2.91 -0.02 0.90 16 33 H 0.17 1.41 7.03 -2.91 -0.02 1.39 16 34 H 0.12 1.93 8.05 -2.39 -0.02 1.91 16 35 H 0.10 2.04 8.08 -2.38 -0.02 2.02 16 36 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.02 1.13 3.83 -2.39 -0.01 1.12 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.26 16.23 8.73 -92.71 -0.81 15.42 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 45 H 0.07 0.81 7.67 -2.38 -0.02 0.79 16 46 H 0.15 2.16 6.30 -2.91 -0.02 2.14 16 Total: -1.00 -83.53 376.25 4.78 -78.75 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 0.86 Total: 4.07 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.33 Total: -2.08 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -1.82 Total: -92.26 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -2.39 Total: -44.65 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 1.80 Total: 56.16 kcal Total: -83.53 4.78 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204754515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -83.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds