Wall clock time and date at job start Tue Mar 31 2020 18:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35988 * 116.99687 * 2 1 4 4 C 1.39045 * 119.88729 * 359.97438 * 3 2 1 5 5 C 1.38029 * 120.39903 * 180.02562 * 4 3 2 6 6 C 1.38662 * 120.17546 * 359.97438 * 5 4 3 7 7 O 1.35669 * 120.11440 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00328 * 0.02562 * 7 6 5 9 9 C 1.40391 * 119.76880 * 0.02860 * 6 5 4 10 10 C 1.46795 * 120.19497 * 180.02562 * 9 6 5 11 11 O 1.21298 * 119.99866 * 359.97438 * 10 9 6 12 12 C 1.50703 * 119.99981 * 179.97438 * 10 9 6 13 13 O 1.42899 * 109.47184 * 179.97438 * 12 10 9 14 14 C 1.42893 * 114.00135 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.78148 * 328.21346 * 14 13 12 16 16 C 1.55154 * 110.72052 * 204.97568 * 14 13 12 17 17 C 1.55125 * 101.48572 * 205.96682 * 16 14 13 18 18 N 1.47423 * 104.72395 * 37.29433 * 17 16 14 19 19 C 1.36938 * 125.64840 * 155.81746 * 18 17 16 20 20 H 1.08002 * 119.99798 * 193.30965 * 19 18 17 21 21 C 1.38805 * 120.00326 * 13.30689 * 19 18 17 22 22 N 1.31619 * 119.99643 * 27.28488 * 21 19 18 23 23 Si 1.86803 * 120.00275 * 207.28323 * 21 19 18 24 24 H 1.48496 * 109.47008 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46883 * 240.00007 * 23 21 19 26 26 H 1.48496 * 109.47035 * 120.00305 * 23 21 19 27 27 C 1.47022 * 108.69958 * 335.55457 * 18 17 16 28 28 C 1.38125 * 119.88599 * 180.30319 * 3 2 1 29 29 H 1.09004 * 109.46583 * 300.00162 * 1 2 3 30 30 H 1.09000 * 109.47152 * 59.99976 * 1 2 3 31 31 H 1.08997 * 109.46571 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.80126 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.91097 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47642 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46927 * 300.00246 * 8 7 6 36 36 H 1.09010 * 109.47032 * 60.00152 * 8 7 6 37 37 H 1.09000 * 109.47157 * 59.99637 * 12 10 9 38 38 H 1.09002 * 109.46723 * 299.99775 * 12 10 9 39 39 H 1.09001 * 111.00439 * 324.20428 * 16 14 13 40 40 H 1.09003 * 111.00478 * 88.06054 * 16 14 13 41 41 H 1.09002 * 110.50230 * 278.45118 * 17 16 14 42 42 H 1.09005 * 110.34880 * 156.05846 * 17 16 14 43 43 H 0.96994 * 120.00297 * 5.84617 * 22 21 19 44 44 H 1.08999 * 109.88184 * 120.70859 * 27 18 17 45 45 H 1.09000 * 109.87675 * 241.70882 * 27 18 17 46 46 H 1.07995 * 120.08883 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2868 2.3763 -0.0005 5 6 1.9023 3.6117 -0.0011 6 6 3.2861 3.7010 -0.0005 7 8 3.8898 4.9159 -0.0006 8 6 3.0383 6.0636 -0.0006 9 6 4.0601 2.5297 -0.0001 10 6 5.5257 2.6133 0.0011 11 8 6.0713 3.6966 0.0011 12 6 6.3523 1.3532 0.0022 13 8 7.7400 1.6939 0.0025 14 6 8.6157 0.5647 0.0030 15 1 8.1680 -0.2717 0.5398 16 6 9.9915 0.9371 0.6161 17 6 10.9247 -0.0954 -0.0690 18 7 10.4008 -0.2213 -1.4413 19 6 11.1177 -0.6273 -2.5351 20 1 10.7157 -0.4852 -3.5274 21 6 12.3610 -1.2216 -2.3686 22 7 12.6342 -1.8765 -1.2600 23 14 13.6465 -1.0920 -3.7178 24 1 13.0951 -0.3100 -4.8533 25 1 14.0117 -2.4532 -4.1858 26 1 14.8543 -0.4105 -3.1868 27 6 8.9797 0.1554 -1.4397 28 6 3.4259 1.2813 -0.0063 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2086 2.3139 -0.0005 33 1 1.3046 4.5113 -0.0011 34 1 3.6471 6.9677 -0.0001 35 1 2.4092 6.0491 -0.8905 36 1 2.4092 6.0492 0.8895 37 1 6.1226 0.7672 -0.8878 38 1 6.1212 0.7679 0.8922 39 1 10.2727 1.9571 0.3541 40 1 9.9873 0.8002 1.6975 41 1 10.8751 -1.0551 0.4454 42 1 11.9501 0.2738 -0.0868 43 1 11.9410 -2.0168 -0.5962 44 1 8.8180 0.9953 -2.1154 45 1 8.3710 -0.6934 -1.7515 46 1 4.0137 0.3754 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204768031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:04 Heat of formation + Delta-G solvation = -89.476501 kcal Electronic energy + Delta-G solvation = -28425.918377 eV Core-core repulsion = 24283.291900 eV Total energy + Delta-G solvation = -4142.626477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05553 -39.56063 -39.05919 -38.06341 -36.60227 -35.88356 -32.44149 -32.12731 -30.20581 -29.31274 -28.61488 -27.58011 -27.30004 -26.73298 -24.25117 -23.84072 -22.28701 -20.51412 -20.31893 -20.03980 -18.48777 -17.92023 -17.51361 -17.30584 -16.59475 -16.33360 -15.95432 -15.89860 -15.50527 -15.19621 -15.08333 -14.59619 -14.40239 -14.00497 -13.67215 -13.49217 -13.35317 -13.27204 -13.04108 -12.82823 -12.78724 -12.35932 -12.14320 -12.01094 -11.96860 -11.53631 -11.40497 -11.09103 -10.84253 -10.73202 -10.59365 -10.41698 -10.01068 -9.94163 -9.59009 -9.55605 -9.50588 -9.21456 -8.36331 -8.18287 -6.89656 -6.04245 -3.06327 0.27983 0.99134 2.25085 2.78682 2.95101 3.33966 3.34891 3.56566 3.60674 3.73869 4.17776 4.23602 4.47475 4.60023 4.62242 4.66336 4.70211 4.77734 4.79733 4.92650 5.02106 5.04981 5.16607 5.18818 5.20768 5.25898 5.27831 5.40940 5.45972 5.48074 5.60461 5.72268 5.74375 5.79419 5.98248 6.13166 6.31069 6.45265 6.55266 6.67396 6.84670 7.02024 7.04090 7.09503 7.43477 7.64117 7.83926 8.53767 9.08014 9.87669 10.41501 11.29546 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002277 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.098101 B =12293.790728 C =13229.267541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.079 3.921 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.151 3.849 7 O -0.284 6.284 8 C 0.022 3.978 9 C -0.157 4.157 10 C 0.393 3.607 11 O -0.405 6.405 12 C 0.018 3.982 13 O -0.357 6.357 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.129 4.129 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.332 4.332 20 H 0.067 0.933 21 C -0.028 4.028 22 N -0.923 5.923 23 Si 1.070 2.930 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.116 3.884 28 C -0.069 4.069 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.269 0.731 44 H 0.036 0.964 45 H 0.022 0.978 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.650 9.624 6.089 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.034 3.966 4 C -0.154 4.154 5 C -0.203 4.203 6 C 0.104 3.896 7 O -0.195 6.195 8 C -0.073 4.073 9 C -0.159 4.159 10 C 0.267 3.733 11 O -0.276 6.276 12 C -0.060 4.060 13 O -0.275 6.275 14 C 0.016 3.984 15 H 0.085 0.915 16 C -0.167 4.167 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.460 4.460 20 H 0.085 0.915 21 C -0.229 4.229 22 N -0.565 5.565 23 Si 0.900 3.100 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.216 1.216 27 C -0.010 4.010 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.040 0.960 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.375 9.898 5.582 29.640 hybrid contribution -2.544 0.142 0.318 2.567 sum -29.919 10.040 5.900 32.105 Atomic orbital electron populations 1.23070 0.78371 1.04209 1.01162 1.86126 1.21291 1.26077 1.89353 1.18699 0.92010 0.84538 1.01365 1.21250 1.00316 0.91580 1.02303 1.21027 0.92924 0.98734 1.07599 1.19119 0.90596 0.85505 0.94420 1.86346 1.34589 1.11579 1.87030 1.23167 0.95806 0.87273 1.01073 1.19633 0.94636 0.90791 1.10840 1.21922 0.87127 0.90491 0.73791 1.90605 1.73771 1.30564 1.32703 1.22724 0.84369 0.96302 1.02609 1.88046 1.12994 1.31405 1.95065 1.23280 0.90464 0.87461 0.97189 0.91457 1.22969 0.93479 1.01378 0.98887 1.21612 0.96518 0.94485 0.85445 1.44463 1.04401 1.79012 1.05185 1.19825 1.02377 1.38397 0.85406 0.91535 1.25731 0.98709 0.95677 1.02753 1.70726 1.38244 1.36355 1.11198 0.83466 0.76032 0.75902 0.74603 1.21870 1.22226 1.21629 1.21752 0.87645 0.97411 0.94188 1.20557 0.91781 0.97076 0.99381 0.92723 0.92686 0.88029 0.84697 0.84432 0.87801 0.92592 0.92634 0.89823 0.90032 0.90486 0.91398 0.95480 0.92347 0.91918 0.94561 0.95983 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.69 10.49 -19.70 -0.21 -2.90 16 3 C 0.08 0.71 6.67 -39.32 -0.26 0.45 16 4 C -0.14 -1.01 9.02 -39.36 -0.36 -1.37 16 5 C -0.18 -1.50 9.02 -39.50 -0.36 -1.86 16 6 C 0.15 1.71 6.70 -38.62 -0.26 1.45 16 7 O -0.28 -3.47 8.56 -40.65 -0.35 -3.82 16 8 C 0.02 0.15 9.81 101.05 0.99 1.14 16 9 C -0.16 -1.89 5.88 -104.96 -0.62 -2.51 16 10 C 0.39 5.79 7.18 -30.85 -0.22 5.57 16 11 O -0.41 -7.50 15.30 -24.74 -0.38 -7.88 16 12 C 0.02 0.24 4.90 36.01 0.18 0.42 16 13 O -0.36 -6.56 9.60 -55.14 -0.53 -7.09 16 14 C 0.07 1.40 3.39 -24.90 -0.08 1.32 16 15 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 16 C -0.13 -2.56 6.82 -24.47 -0.17 -2.73 16 17 C 0.14 3.53 5.22 -2.41 -0.01 3.52 16 18 N -0.60 -16.21 3.33 -169.94 -0.57 -16.77 16 19 C -0.33 -9.82 10.05 -15.06 -0.15 -9.97 16 20 H 0.07 1.96 7.96 -52.49 -0.42 1.55 16 21 C -0.03 -0.82 5.09 -17.43 -0.09 -0.91 16 22 N -0.92 -28.57 12.82 55.49 0.71 -27.86 16 23 Si 1.07 26.31 30.00 -169.99 -5.10 21.21 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.12 2.63 7.01 -3.07 -0.02 2.61 16 28 C -0.07 -0.69 9.40 -38.95 -0.37 -1.06 16 29 H 0.05 0.18 7.65 -51.93 -0.40 -0.21 16 30 H 0.05 0.19 7.65 -51.93 -0.40 -0.20 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.14 0.62 6.27 -52.49 -0.33 0.29 16 33 H 0.14 0.75 6.29 -52.48 -0.33 0.42 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 36 H 0.06 0.29 7.66 -51.92 -0.40 -0.11 16 37 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.03 0.68 6.84 -51.93 -0.36 0.33 16 42 H 0.06 1.55 7.73 -51.93 -0.40 1.15 16 43 H 0.27 8.28 5.83 -40.82 -0.24 8.04 16 44 H 0.04 0.85 8.06 -51.93 -0.42 0.44 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.15 1.26 7.05 -52.49 -0.37 0.89 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -37.62 378.80 -8.12 -45.74 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.61 Total: -3.52 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.80 Total: -2.82 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.15 Total: -44.64 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.46 Total: -21.68 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.10 Total: 21.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.62 -8.12 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204768031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.737 kcal (2) G-P(sol) polarization free energy of solvation -37.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds