Wall clock time and date at job start Tue Mar 31 2020 18:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35988 * 116.99687 * 2 1 4 4 C 1.39045 * 119.88729 * 359.97438 * 3 2 1 5 5 C 1.38029 * 120.39903 * 180.02562 * 4 3 2 6 6 C 1.38662 * 120.17546 * 359.97438 * 5 4 3 7 7 O 1.35669 * 120.11440 * 180.02562 * 6 5 4 8 8 C 1.42901 * 117.00328 * 0.02562 * 7 6 5 9 9 C 1.40391 * 119.76880 * 0.02860 * 6 5 4 10 10 C 1.46795 * 120.19497 * 180.02562 * 9 6 5 11 11 O 1.21298 * 119.99866 * 359.97438 * 10 9 6 12 12 C 1.50703 * 119.99981 * 179.97438 * 10 9 6 13 13 O 1.42899 * 109.47184 * 179.97438 * 12 10 9 14 14 C 1.42893 * 114.00135 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.78148 * 328.21346 * 14 13 12 16 16 C 1.55154 * 110.72052 * 204.97568 * 14 13 12 17 17 C 1.55125 * 101.48572 * 205.96682 * 16 14 13 18 18 N 1.47423 * 104.72395 * 37.29433 * 17 16 14 19 19 C 1.36938 * 125.64840 * 155.81746 * 18 17 16 20 20 H 1.08002 * 119.99798 * 193.30965 * 19 18 17 21 21 C 1.38805 * 120.00326 * 13.30689 * 19 18 17 22 22 N 1.31619 * 119.99643 * 27.28488 * 21 19 18 23 23 Si 1.86803 * 120.00275 * 207.28323 * 21 19 18 24 24 H 1.48496 * 109.47008 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46883 * 240.00007 * 23 21 19 26 26 H 1.48496 * 109.47035 * 120.00305 * 23 21 19 27 27 C 1.47022 * 108.69958 * 335.55457 * 18 17 16 28 28 C 1.38125 * 119.88599 * 180.30319 * 3 2 1 29 29 H 1.09004 * 109.46583 * 300.00162 * 1 2 3 30 30 H 1.09000 * 109.47152 * 59.99976 * 1 2 3 31 31 H 1.08997 * 109.46571 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.80126 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.91097 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47642 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.46927 * 300.00246 * 8 7 6 36 36 H 1.09010 * 109.47032 * 60.00152 * 8 7 6 37 37 H 1.09000 * 109.47157 * 59.99637 * 12 10 9 38 38 H 1.09002 * 109.46723 * 299.99775 * 12 10 9 39 39 H 1.09001 * 111.00439 * 324.20428 * 16 14 13 40 40 H 1.09003 * 111.00478 * 88.06054 * 16 14 13 41 41 H 1.09002 * 110.50230 * 278.45118 * 17 16 14 42 42 H 1.09005 * 110.34880 * 156.05846 * 17 16 14 43 43 H 0.96994 * 120.00297 * 5.84617 * 22 21 19 44 44 H 1.08999 * 109.88184 * 120.70859 * 27 18 17 45 45 H 1.09000 * 109.87675 * 241.70882 * 27 18 17 46 46 H 1.07995 * 120.08883 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2868 2.3763 -0.0005 5 6 1.9023 3.6117 -0.0011 6 6 3.2861 3.7010 -0.0005 7 8 3.8898 4.9159 -0.0006 8 6 3.0383 6.0636 -0.0006 9 6 4.0601 2.5297 -0.0001 10 6 5.5257 2.6133 0.0011 11 8 6.0713 3.6966 0.0011 12 6 6.3523 1.3532 0.0022 13 8 7.7400 1.6939 0.0025 14 6 8.6157 0.5647 0.0030 15 1 8.1680 -0.2717 0.5398 16 6 9.9915 0.9371 0.6161 17 6 10.9247 -0.0954 -0.0690 18 7 10.4008 -0.2213 -1.4413 19 6 11.1177 -0.6273 -2.5351 20 1 10.7157 -0.4852 -3.5274 21 6 12.3610 -1.2216 -2.3686 22 7 12.6342 -1.8765 -1.2600 23 14 13.6465 -1.0920 -3.7178 24 1 13.0951 -0.3100 -4.8533 25 1 14.0117 -2.4532 -4.1858 26 1 14.8543 -0.4105 -3.1868 27 6 8.9797 0.1554 -1.4397 28 6 3.4259 1.2813 -0.0063 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2086 2.3139 -0.0005 33 1 1.3046 4.5113 -0.0011 34 1 3.6471 6.9677 -0.0001 35 1 2.4092 6.0491 -0.8905 36 1 2.4092 6.0492 0.8895 37 1 6.1226 0.7672 -0.8878 38 1 6.1212 0.7679 0.8922 39 1 10.2727 1.9571 0.3541 40 1 9.9873 0.8002 1.6975 41 1 10.8751 -1.0551 0.4454 42 1 11.9501 0.2738 -0.0868 43 1 11.9410 -2.0168 -0.5962 44 1 8.8180 0.9953 -2.1154 45 1 8.3710 -0.6934 -1.7515 46 1 4.0137 0.3754 -0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204768031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:03 Heat of formation + Delta-G solvation = -113.641053 kcal Electronic energy + Delta-G solvation = -28426.966231 eV Core-core repulsion = 24283.291900 eV Total energy + Delta-G solvation = -4143.674331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80259 -40.48607 -40.03020 -39.49293 -37.56177 -37.28278 -34.39132 -33.01556 -31.16191 -30.82688 -29.80271 -28.75741 -27.88687 -27.80705 -26.23131 -24.71353 -22.98743 -22.17729 -21.99833 -21.15238 -19.68330 -19.24557 -18.58063 -18.25822 -17.72850 -17.13520 -16.94828 -16.60858 -16.45452 -16.38920 -15.99994 -15.89705 -15.66859 -15.51113 -15.11790 -14.98342 -14.68764 -14.38647 -14.03219 -13.79757 -13.72541 -13.52677 -13.27953 -13.15590 -12.66253 -12.61931 -12.55408 -12.52516 -12.49226 -12.36721 -11.95593 -11.88801 -11.62262 -11.60671 -11.40922 -10.74925 -10.68514 -10.51962 -10.25285 -9.07562 -8.86006 -8.36407 -5.35409 -0.50139 0.30998 1.31357 1.56550 1.65502 1.82210 2.11865 2.23918 2.41278 2.60662 2.62682 3.15848 3.19943 3.51930 3.59681 3.67956 3.78882 3.87894 3.97269 4.04014 4.14111 4.15928 4.26214 4.29887 4.31924 4.35942 4.38735 4.42891 4.45576 4.55091 4.61617 4.67721 4.75536 4.81843 4.82476 4.87024 4.89863 5.02198 5.07757 5.13956 5.23901 5.33944 5.60785 6.08520 6.27128 6.28690 6.43173 6.55131 6.86571 7.66569 8.23146 8.97493 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002277 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.098101 B =12293.790728 C =13229.267541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.072 3.928 4 C -0.121 4.121 5 C -0.178 4.178 6 C 0.134 3.866 7 O -0.321 6.321 8 C 0.012 3.988 9 C -0.184 4.184 10 C 0.396 3.604 11 O -0.459 6.459 12 C 0.009 3.991 13 O -0.378 6.378 14 C 0.092 3.908 15 H 0.100 0.900 16 C -0.117 4.117 17 C 0.149 3.851 18 N -0.627 5.627 19 C -0.349 4.349 20 H 0.058 0.942 21 C -0.077 4.077 22 N -0.946 5.946 23 Si 1.121 2.879 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.112 3.888 28 C -0.074 4.074 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.259 0.741 44 H 0.021 0.979 45 H 0.029 0.971 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.722 9.605 6.430 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.027 3.973 4 C -0.140 4.140 5 C -0.197 4.197 6 C 0.087 3.913 7 O -0.233 6.233 8 C -0.082 4.082 9 C -0.185 4.185 10 C 0.274 3.726 11 O -0.334 6.334 12 C -0.068 4.068 13 O -0.297 6.297 14 C 0.034 3.966 15 H 0.117 0.883 16 C -0.156 4.156 17 C 0.023 3.977 18 N -0.355 5.355 19 C -0.478 4.478 20 H 0.076 0.924 21 C -0.273 4.273 22 N -0.590 5.590 23 Si 0.945 3.055 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.014 4.014 28 C -0.093 4.093 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.047 0.953 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -30.507 9.875 5.932 32.610 hybrid contribution -1.812 0.152 0.208 1.831 sum -32.320 10.027 6.140 34.392 Atomic orbital electron populations 1.23385 0.76300 1.05702 1.02474 1.86109 1.23491 1.25857 1.89251 1.18819 0.91881 0.85451 1.01112 1.21655 1.01972 0.90596 0.99742 1.21339 0.91715 1.00288 1.06308 1.19427 0.91906 0.85116 0.94874 1.86301 1.36934 1.12875 1.87204 1.23443 0.95994 0.85895 1.02832 1.19481 0.93079 0.92232 1.13751 1.22328 0.88574 0.89845 0.71892 1.90581 1.74869 1.32103 1.35889 1.23073 0.81947 0.96799 1.04964 1.88022 1.15166 1.31397 1.95074 1.23056 0.90497 0.88568 0.94527 0.88270 1.22856 0.92965 0.99145 1.00600 1.21526 0.95906 0.95300 0.84937 1.44736 1.06406 1.78857 1.05525 1.20066 1.03305 1.38239 0.86159 0.92398 1.27171 1.00694 0.95116 1.04299 1.70832 1.38030 1.38115 1.11975 0.82788 0.73668 0.76453 0.72555 1.20181 1.21207 1.21198 1.21894 0.85697 0.96921 0.96842 1.20631 0.92722 0.96565 0.99385 0.91235 0.91408 0.86696 0.81284 0.81495 0.87439 0.90863 0.90660 0.88215 0.86574 0.91588 0.87805 0.96138 0.95594 0.93029 0.96128 0.95284 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.85 10.49 -93.42 -0.98 -5.83 16 3 C 0.07 1.14 6.67 22.44 0.15 1.29 16 4 C -0.12 -1.40 9.02 22.41 0.20 -1.20 16 5 C -0.18 -2.42 9.02 22.32 0.20 -2.22 16 6 C 0.13 2.93 6.70 22.90 0.15 3.08 16 7 O -0.32 -7.87 8.56 -68.87 -0.59 -8.46 16 8 C 0.01 0.16 9.81 113.37 1.11 1.27 16 9 C -0.18 -4.36 5.88 -20.08 -0.12 -4.48 16 10 C 0.40 11.83 7.18 27.93 0.20 12.03 16 11 O -0.46 -17.74 15.30 25.87 0.40 -17.34 16 12 C 0.01 0.23 4.90 71.24 0.35 0.58 16 13 O -0.38 -13.68 9.60 -129.95 -1.25 -14.93 16 14 C 0.09 3.36 3.39 31.78 0.11 3.47 16 15 H 0.10 3.04 7.89 -2.39 -0.02 3.02 16 16 C -0.12 -4.61 6.82 32.06 0.22 -4.39 16 17 C 0.15 7.39 5.22 86.93 0.45 7.85 16 18 N -0.63 -34.44 3.33 -691.57 -2.30 -36.74 16 19 C -0.35 -21.11 10.05 84.03 0.84 -20.26 16 20 H 0.06 3.50 7.96 -2.91 -0.02 3.48 16 21 C -0.08 -4.62 5.09 84.86 0.43 -4.19 16 22 N -0.95 -59.69 12.82 21.65 0.28 -59.41 16 23 Si 1.12 53.54 30.00 68.60 2.06 55.60 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 C 0.11 5.10 7.01 86.73 0.61 5.71 16 28 C -0.07 -1.39 9.40 22.68 0.21 -1.18 16 29 H 0.07 0.20 7.65 -2.38 -0.02 0.18 16 30 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 31 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.17 0.73 6.27 -2.91 -0.02 0.71 16 33 H 0.17 1.18 6.29 -2.91 -0.02 1.16 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 0.64 7.66 -2.39 -0.02 0.63 16 36 H 0.07 0.63 7.66 -2.38 -0.02 0.61 16 37 H 0.10 2.35 8.08 -2.39 -0.02 2.33 16 38 H 0.12 2.30 8.06 -2.39 -0.02 2.28 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.02 1.06 6.84 -2.39 -0.02 1.04 16 42 H 0.03 1.42 7.73 -2.38 -0.02 1.40 16 43 H 0.26 16.37 5.83 -92.71 -0.54 15.83 16 44 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.16 2.45 7.05 -2.91 -0.02 2.43 16 Total: -1.00 -85.28 378.80 5.07 -80.20 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.22 Total: 8.35 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.24 Total: -1.43 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -2.02 Total: -96.15 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.42 Total: -46.56 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 2.06 Total: 55.60 kcal Total: -85.28 5.07 -80.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204768031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.438 kcal (2) G-P(sol) polarization free energy of solvation -85.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds