Wall clock time and date at job start Tue Mar 31 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 116.99678 * 2 1 4 4 C 1.39046 * 119.88506 * 0.02562 * 3 2 1 5 5 C 1.38026 * 120.39991 * 179.97438 * 4 3 2 6 6 C 1.38667 * 120.17231 * 359.78336 * 5 4 3 7 7 O 1.35675 * 120.11425 * 180.24092 * 6 5 4 8 8 C 1.42899 * 117.00011 * 0.20388 * 7 6 5 9 9 C 1.40402 * 119.77136 * 0.44986 * 6 5 4 10 10 C 1.46782 * 120.19498 * 179.81357 * 9 6 5 11 11 O 1.21304 * 120.00575 * 359.72086 * 10 9 6 12 12 C 1.50704 * 119.99779 * 179.72030 * 10 9 6 13 13 O 1.42894 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.42907 * 113.99967 * 180.02562 * 13 12 10 15 15 H 1.08998 * 110.77857 * 31.78014 * 14 13 12 16 16 C 1.55158 * 110.72006 * 155.02363 * 14 13 12 17 17 C 1.54908 * 101.58152 * 153.86358 * 16 14 13 18 18 N 1.47426 * 104.83177 * 322.98774 * 17 16 14 19 19 C 1.36932 * 125.64965 * 204.09433 * 18 17 16 20 20 H 1.08005 * 119.99976 * 169.98526 * 19 18 17 21 21 C 1.38816 * 119.99894 * 349.98466 * 19 18 17 22 22 N 1.31614 * 119.99975 * 350.42072 * 21 19 18 23 23 Si 1.86802 * 119.99657 * 170.42264 * 21 19 18 24 24 H 1.48496 * 109.47006 * 94.14331 * 23 21 19 25 25 H 1.48500 * 109.46736 * 214.13984 * 23 21 19 26 26 H 1.48494 * 109.47475 * 334.13794 * 23 21 19 27 27 C 1.47027 * 108.70098 * 24.12894 * 18 17 16 28 28 C 1.38116 * 119.88637 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47603 * 300.00533 * 1 2 3 30 30 H 1.08998 * 109.47148 * 60.00411 * 1 2 3 31 31 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.80467 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.91274 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46953 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47426 * 300.00193 * 8 7 6 36 36 H 1.09004 * 109.46774 * 60.00794 * 8 7 6 37 37 H 1.08998 * 109.47078 * 59.99616 * 12 10 9 38 38 H 1.09002 * 109.47000 * 300.00122 * 12 10 9 39 39 H 1.09006 * 111.00391 * 35.78692 * 16 14 13 40 40 H 1.09004 * 111.03509 * 271.94900 * 16 14 13 41 41 H 1.09001 * 110.36679 * 204.14967 * 17 16 14 42 42 H 1.08999 * 110.45743 * 81.87228 * 17 16 14 43 43 H 0.96998 * 120.00188 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.88209 * 118.35743 * 27 18 17 45 45 H 1.09001 * 109.88380 * 239.51926 * 27 18 17 46 46 H 1.08000 * 120.08976 * 359.97114 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2866 2.3763 0.0005 5 6 1.9021 3.6117 0.0011 6 6 3.2859 3.7010 0.0056 7 8 3.8896 4.9160 0.0111 8 6 3.0381 6.0635 0.0164 9 6 4.0601 2.5297 0.0001 10 6 5.5255 2.6134 0.0007 11 8 6.0712 3.6967 0.0009 12 6 6.3521 1.3533 0.0011 13 8 7.7399 1.6940 0.0011 14 6 8.6156 0.5647 0.0009 15 1 8.1680 -0.2717 -0.5359 16 6 9.9915 0.9371 -0.6119 17 6 10.9260 -0.0900 0.0746 18 7 10.4005 -0.2209 1.4458 19 6 11.1170 -0.6268 2.5398 20 1 10.6908 -0.5372 3.5281 21 6 12.3913 -1.1533 2.3785 22 7 12.8380 -1.4383 1.1738 23 14 13.4720 -1.4573 3.8716 24 1 13.3125 -2.8639 4.3199 25 1 14.8918 -1.2098 3.5135 26 1 13.0709 -0.5397 4.9681 27 6 8.9792 0.1557 1.4438 28 6 3.4257 1.2814 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2085 2.3139 0.0014 33 1 1.3044 4.5112 0.0019 34 1 3.6469 6.9677 0.0200 35 1 2.4089 6.0532 -0.8735 36 1 2.4092 6.0451 0.9065 37 1 6.1221 0.7676 -0.8888 38 1 6.1214 0.7677 0.8911 39 1 10.2727 1.9572 -0.3500 40 1 9.9881 0.8004 -1.6933 41 1 11.9500 0.2830 0.0948 42 1 10.8825 -1.0491 -0.4415 43 1 13.7282 -1.8066 1.0611 44 1 8.3702 -0.6939 1.7529 45 1 8.8174 0.9957 2.1193 46 1 4.0136 0.3754 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204768032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:08 Heat of formation + Delta-G solvation = -87.796987 kcal Electronic energy + Delta-G solvation = -28385.941015 eV Core-core repulsion = 24243.387366 eV Total energy + Delta-G solvation = -4142.553648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02223 -39.52377 -38.99287 -37.91194 -36.56975 -35.64784 -32.32512 -32.03296 -30.17697 -29.34773 -28.52164 -27.49843 -27.27153 -26.73267 -24.31610 -23.81636 -22.25397 -20.45332 -20.15474 -20.02210 -18.44951 -17.88571 -17.26340 -16.89063 -16.45527 -16.29652 -15.91792 -15.80355 -15.42882 -15.10310 -15.05081 -14.65426 -14.44581 -14.13404 -13.73137 -13.44993 -13.26011 -13.23394 -12.79974 -12.76159 -12.42448 -12.31941 -11.98941 -11.97196 -11.67889 -11.48457 -11.37649 -11.05839 -10.81621 -10.80469 -10.72801 -10.34971 -10.04918 -9.73750 -9.63547 -9.52246 -9.50625 -9.11448 -8.53814 -8.15386 -6.75023 -5.69791 -3.02086 0.31420 1.02085 2.29406 2.81398 2.98072 3.37942 3.41305 3.44070 3.49617 3.52582 4.20599 4.28628 4.51039 4.57540 4.62980 4.66219 4.72214 4.80506 4.82124 4.95847 5.05363 5.09050 5.19013 5.27059 5.29014 5.30739 5.44692 5.49438 5.53794 5.57287 5.75584 5.78779 5.82058 5.89824 6.01386 6.37760 6.56587 6.63684 6.67578 6.77413 6.87438 7.06994 7.50724 7.55513 7.61901 7.71306 7.83916 8.30954 9.24257 9.86076 10.53542 11.43597 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002267 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.372259 B =12350.016261 C =13263.469404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.078 3.922 4 C -0.136 4.136 5 C -0.184 4.184 6 C 0.151 3.849 7 O -0.284 6.284 8 C 0.022 3.978 9 C -0.157 4.157 10 C 0.392 3.608 11 O -0.405 6.405 12 C 0.018 3.982 13 O -0.358 6.358 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.138 4.138 17 C 0.174 3.826 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.115 3.885 28 C -0.069 4.069 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.253 0.747 44 H 0.022 0.978 45 H 0.034 0.966 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.569 8.512 -5.936 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.034 3.966 4 C -0.155 4.155 5 C -0.203 4.203 6 C 0.103 3.897 7 O -0.195 6.195 8 C -0.073 4.073 9 C -0.159 4.159 10 C 0.266 3.734 11 O -0.277 6.277 12 C -0.060 4.060 13 O -0.276 6.276 14 C 0.016 3.984 15 H 0.085 0.915 16 C -0.177 4.177 17 C 0.049 3.951 18 N -0.328 5.328 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.011 4.011 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -28.702 9.084 -5.888 30.675 hybrid contribution -0.309 -0.402 0.784 0.934 sum -29.011 8.682 -5.104 30.710 Atomic orbital electron populations 1.23064 0.78408 1.04186 1.01148 1.86125 1.21260 1.26090 1.89364 1.18698 0.92021 0.84519 1.01399 1.21244 1.00293 0.91592 1.02371 1.21022 0.92932 0.98717 1.07639 1.19130 0.90591 0.85515 0.94441 1.86349 1.34563 1.11575 1.87038 1.23162 0.95804 0.87298 1.01052 1.19653 0.94707 0.90764 1.10728 1.21943 0.87094 0.90563 0.73778 1.90605 1.73768 1.30592 1.32693 1.22709 0.84567 0.96166 1.02550 1.88055 1.12866 1.31637 1.95069 1.23310 0.90563 0.87332 0.97195 0.91540 1.23134 0.93734 1.01876 0.98944 1.21424 0.96161 0.93870 0.83674 1.44360 1.03994 1.78647 1.05809 1.19033 0.96738 1.34081 0.85660 0.90623 1.24822 0.98388 1.00420 0.96847 1.69946 1.18277 1.48575 1.19901 0.86111 0.80043 0.77838 0.81835 1.21645 1.21595 1.20586 1.21743 0.87903 0.97163 0.94284 1.20562 0.91760 0.97106 0.99336 0.92712 0.92734 0.88046 0.84732 0.84467 0.87816 0.92649 0.92614 0.90094 0.89864 0.90987 0.91744 0.90876 0.95320 0.93700 0.96057 0.94783 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.70 10.49 -19.71 -0.21 -2.91 16 3 C 0.08 0.72 6.67 -39.33 -0.26 0.45 16 4 C -0.14 -1.03 9.02 -39.36 -0.36 -1.38 16 5 C -0.18 -1.52 9.02 -39.50 -0.36 -1.87 16 6 C 0.15 1.72 6.71 -38.61 -0.26 1.46 16 7 O -0.28 -3.49 8.56 -40.67 -0.35 -3.84 16 8 C 0.02 0.16 9.81 101.05 0.99 1.15 16 9 C -0.16 -1.90 5.88 -104.96 -0.62 -2.52 16 10 C 0.39 5.83 7.18 -30.85 -0.22 5.61 16 11 O -0.41 -7.56 15.30 -24.75 -0.38 -7.94 16 12 C 0.02 0.25 4.90 36.01 0.18 0.42 16 13 O -0.36 -6.67 9.60 -55.14 -0.53 -7.20 16 14 C 0.07 1.42 3.40 -24.90 -0.08 1.33 16 15 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 16 C -0.14 -2.85 6.81 -24.58 -0.17 -3.01 16 17 C 0.17 4.37 5.42 -2.53 -0.01 4.36 16 18 N -0.60 -16.19 3.39 -170.07 -0.58 -16.77 16 19 C -0.23 -6.58 10.24 -15.06 -0.15 -6.73 16 20 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 21 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 22 N -0.92 -27.58 10.68 55.49 0.59 -26.99 16 23 Si 0.91 22.60 29.56 -169.99 -5.03 17.57 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.12 2.60 7.02 -3.06 -0.02 2.58 16 28 C -0.07 -0.69 9.40 -38.96 -0.37 -1.06 16 29 H 0.05 0.19 7.65 -51.93 -0.40 -0.20 16 30 H 0.05 0.19 7.65 -51.93 -0.40 -0.21 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.63 6.27 -52.49 -0.33 0.30 16 33 H 0.14 0.76 6.29 -52.49 -0.33 0.43 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 36 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 37 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 2.03 6.94 -51.93 -0.36 1.67 16 42 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 46 H 0.15 1.27 7.05 -52.49 -0.37 0.90 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -36.55 379.78 -8.29 -44.84 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.72 Total: -4.04 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.81 Total: 1.56 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.02 Total: -43.76 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.46 Total: -21.90 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.55 -8.29 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204768032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.962 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds