Wall clock time and date at job start Tue Mar 31 2020 18:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35991 * 116.99678 * 2 1 4 4 C 1.39046 * 119.88506 * 0.02562 * 3 2 1 5 5 C 1.38026 * 120.39991 * 179.97438 * 4 3 2 6 6 C 1.38667 * 120.17231 * 359.78336 * 5 4 3 7 7 O 1.35675 * 120.11425 * 180.24092 * 6 5 4 8 8 C 1.42899 * 117.00011 * 0.20388 * 7 6 5 9 9 C 1.40402 * 119.77136 * 0.44986 * 6 5 4 10 10 C 1.46782 * 120.19498 * 179.81357 * 9 6 5 11 11 O 1.21304 * 120.00575 * 359.72086 * 10 9 6 12 12 C 1.50704 * 119.99779 * 179.72030 * 10 9 6 13 13 O 1.42894 * 109.47180 * 179.97438 * 12 10 9 14 14 C 1.42907 * 113.99967 * 180.02562 * 13 12 10 15 15 H 1.08998 * 110.77857 * 31.78014 * 14 13 12 16 16 C 1.55158 * 110.72006 * 155.02363 * 14 13 12 17 17 C 1.54908 * 101.58152 * 153.86358 * 16 14 13 18 18 N 1.47426 * 104.83177 * 322.98774 * 17 16 14 19 19 C 1.36932 * 125.64965 * 204.09433 * 18 17 16 20 20 H 1.08005 * 119.99976 * 169.98526 * 19 18 17 21 21 C 1.38816 * 119.99894 * 349.98466 * 19 18 17 22 22 N 1.31614 * 119.99975 * 350.42072 * 21 19 18 23 23 Si 1.86802 * 119.99657 * 170.42264 * 21 19 18 24 24 H 1.48496 * 109.47006 * 94.14331 * 23 21 19 25 25 H 1.48500 * 109.46736 * 214.13984 * 23 21 19 26 26 H 1.48494 * 109.47475 * 334.13794 * 23 21 19 27 27 C 1.47027 * 108.70098 * 24.12894 * 18 17 16 28 28 C 1.38116 * 119.88637 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47603 * 300.00533 * 1 2 3 30 30 H 1.08998 * 109.47148 * 60.00411 * 1 2 3 31 31 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.80467 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.91274 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.46953 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47426 * 300.00193 * 8 7 6 36 36 H 1.09004 * 109.46774 * 60.00794 * 8 7 6 37 37 H 1.08998 * 109.47078 * 59.99616 * 12 10 9 38 38 H 1.09002 * 109.47000 * 300.00122 * 12 10 9 39 39 H 1.09006 * 111.00391 * 35.78692 * 16 14 13 40 40 H 1.09004 * 111.03509 * 271.94900 * 16 14 13 41 41 H 1.09001 * 110.36679 * 204.14967 * 17 16 14 42 42 H 1.08999 * 110.45743 * 81.87228 * 17 16 14 43 43 H 0.96998 * 120.00188 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.88209 * 118.35743 * 27 18 17 45 45 H 1.09001 * 109.88380 * 239.51926 * 27 18 17 46 46 H 1.08000 * 120.08976 * 359.97114 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2866 2.3763 0.0005 5 6 1.9021 3.6117 0.0011 6 6 3.2859 3.7010 0.0056 7 8 3.8896 4.9160 0.0111 8 6 3.0381 6.0635 0.0164 9 6 4.0601 2.5297 0.0001 10 6 5.5255 2.6134 0.0007 11 8 6.0712 3.6967 0.0009 12 6 6.3521 1.3533 0.0011 13 8 7.7399 1.6940 0.0011 14 6 8.6156 0.5647 0.0009 15 1 8.1680 -0.2717 -0.5359 16 6 9.9915 0.9371 -0.6119 17 6 10.9260 -0.0900 0.0746 18 7 10.4005 -0.2209 1.4458 19 6 11.1170 -0.6268 2.5398 20 1 10.6908 -0.5372 3.5281 21 6 12.3913 -1.1533 2.3785 22 7 12.8380 -1.4383 1.1738 23 14 13.4720 -1.4573 3.8716 24 1 13.3125 -2.8639 4.3199 25 1 14.8918 -1.2098 3.5135 26 1 13.0709 -0.5397 4.9681 27 6 8.9792 0.1557 1.4438 28 6 3.4257 1.2814 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2085 2.3139 0.0014 33 1 1.3044 4.5112 0.0019 34 1 3.6469 6.9677 0.0200 35 1 2.4089 6.0532 -0.8735 36 1 2.4092 6.0451 0.9065 37 1 6.1221 0.7676 -0.8888 38 1 6.1214 0.7677 0.8911 39 1 10.2727 1.9572 -0.3500 40 1 9.9881 0.8004 -1.6933 41 1 11.9500 0.2830 0.0948 42 1 10.8825 -1.0491 -0.4415 43 1 13.7282 -1.8066 1.0611 44 1 8.3702 -0.6939 1.7529 45 1 8.8174 0.9957 2.1193 46 1 4.0136 0.3754 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204768032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:07 Heat of formation + Delta-G solvation = -111.000834 kcal Electronic energy + Delta-G solvation = -28386.947209 eV Core-core repulsion = 24243.387366 eV Total energy + Delta-G solvation = -4143.559843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77150 -40.41313 -39.96922 -39.36976 -37.34713 -37.24792 -34.21407 -32.98640 -31.19592 -30.80181 -29.68274 -28.74048 -27.88888 -27.78603 -26.26090 -24.67791 -22.95833 -22.17977 -21.81127 -21.11507 -19.26926 -18.91115 -18.53314 -18.18449 -17.65218 -17.05464 -16.83522 -16.75151 -16.53052 -16.42540 -16.09215 -15.85807 -15.64865 -15.48625 -14.98680 -14.63664 -14.38179 -14.25529 -13.91414 -13.77031 -13.58337 -13.49718 -13.26411 -13.18401 -12.85691 -12.68380 -12.52863 -12.47989 -12.42061 -12.19060 -12.00805 -11.93050 -11.80501 -11.42499 -11.38705 -10.72790 -10.62656 -10.58335 -10.22422 -8.88971 -8.83510 -7.89745 -5.24967 -0.47063 0.33548 1.35102 1.45658 1.48085 1.57842 2.18329 2.26763 2.43852 2.50813 2.63547 3.25212 3.32337 3.61876 3.69114 3.79759 3.83853 3.99924 4.04995 4.15930 4.17247 4.22433 4.32317 4.33737 4.36165 4.37632 4.45106 4.47421 4.61815 4.64757 4.69665 4.75382 4.78411 4.85362 4.97339 4.98005 5.03031 5.10529 5.16985 5.36571 5.42590 5.56762 5.67944 6.15039 6.21058 6.29633 6.45730 6.59809 7.06098 7.72825 8.39471 9.22580 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.002267 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.372259 B =12350.016261 C =13263.469404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.072 3.928 4 C -0.122 4.122 5 C -0.179 4.179 6 C 0.133 3.867 7 O -0.321 6.321 8 C 0.013 3.987 9 C -0.183 4.183 10 C 0.395 3.605 11 O -0.460 6.460 12 C 0.009 3.991 13 O -0.380 6.380 14 C 0.091 3.909 15 H 0.098 0.902 16 C -0.128 4.128 17 C 0.180 3.820 18 N -0.624 5.624 19 C -0.249 4.249 20 H 0.077 0.923 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.272 1.272 27 C 0.112 3.888 28 C -0.074 4.074 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.012 0.988 43 H 0.250 0.750 44 H 0.034 0.966 45 H 0.021 0.979 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.877 8.189 -5.989 34.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.027 3.973 4 C -0.140 4.140 5 C -0.197 4.197 6 C 0.086 3.914 7 O -0.233 6.233 8 C -0.082 4.082 9 C -0.185 4.185 10 C 0.273 3.727 11 O -0.335 6.335 12 C -0.068 4.068 13 O -0.299 6.299 14 C 0.033 3.967 15 H 0.116 0.884 16 C -0.166 4.166 17 C 0.055 3.945 18 N -0.352 5.352 19 C -0.377 4.377 20 H 0.094 0.906 21 C -0.256 4.256 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.197 1.197 27 C -0.014 4.014 28 C -0.092 4.092 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.056 0.944 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -32.066 8.755 -5.940 33.767 hybrid contribution 0.517 -0.298 0.805 1.002 sum -31.550 8.458 -5.135 33.065 Atomic orbital electron populations 1.23379 0.76339 1.05688 1.02448 1.86108 1.23455 1.25850 1.89258 1.18817 0.91894 0.85429 1.01132 1.21648 1.01948 0.90612 0.99811 1.21331 0.91719 1.00273 1.06366 1.19439 0.91906 0.85123 0.94913 1.86304 1.36914 1.12880 1.87220 1.23436 0.95987 0.85919 1.02809 1.19496 0.93127 0.92216 1.13658 1.22351 0.88559 0.89909 0.71860 1.90581 1.74880 1.32151 1.35905 1.23061 0.82066 0.96676 1.04967 1.88027 1.15102 1.31620 1.95111 1.23078 0.90384 0.88380 0.94857 0.88444 1.22972 0.93594 0.99566 1.00461 1.21210 0.95523 0.94151 0.83605 1.44670 1.06016 1.78589 1.05913 1.19392 0.97594 1.34173 0.86578 0.90561 1.25689 0.99569 1.00518 0.99804 1.70131 1.18338 1.49212 1.21838 0.85048 0.77702 0.77928 0.78519 1.20839 1.21680 1.19691 1.21897 0.85919 0.96969 0.96628 1.20638 0.92698 0.96592 0.99295 0.91432 0.91271 0.86694 0.81327 0.81554 0.87468 0.90687 0.90875 0.86703 0.88052 0.92181 0.88542 0.94414 0.96960 0.94036 0.94838 0.96069 0.82370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.83 10.49 -93.45 -0.98 -5.81 16 3 C 0.07 1.14 6.67 22.43 0.15 1.29 16 4 C -0.12 -1.42 9.02 22.41 0.20 -1.21 16 5 C -0.18 -2.46 9.02 22.32 0.20 -2.25 16 6 C 0.13 2.94 6.71 22.90 0.15 3.09 16 7 O -0.32 -7.94 8.56 -68.95 -0.59 -8.53 16 8 C 0.01 0.16 9.81 113.37 1.11 1.28 16 9 C -0.18 -4.37 5.88 -20.08 -0.12 -4.49 16 10 C 0.40 11.90 7.18 27.92 0.20 12.10 16 11 O -0.46 -17.91 15.30 25.85 0.40 -17.52 16 12 C 0.01 0.24 4.90 71.24 0.35 0.59 16 13 O -0.38 -13.95 9.60 -129.94 -1.25 -15.20 16 14 C 0.09 3.40 3.40 31.78 0.11 3.51 16 15 H 0.10 3.06 7.89 -2.39 -0.02 3.04 16 16 C -0.13 -5.22 6.81 31.99 0.22 -5.00 16 17 C 0.18 9.29 5.42 86.85 0.47 9.76 16 18 N -0.62 -34.30 3.39 -691.97 -2.35 -36.65 16 19 C -0.25 -14.68 10.24 84.04 0.86 -13.82 16 20 H 0.08 4.36 7.85 -2.91 -0.02 4.33 16 21 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 22 N -0.95 -58.17 10.68 21.65 0.23 -57.94 16 23 Si 0.98 47.05 29.56 68.60 2.03 49.08 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 C 0.11 5.02 7.02 86.73 0.61 5.63 16 28 C -0.07 -1.38 9.40 22.68 0.21 -1.16 16 29 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 30 H 0.07 0.20 7.65 -2.39 -0.02 0.18 16 31 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.17 0.75 6.27 -2.91 -0.02 0.73 16 33 H 0.17 1.21 6.29 -2.91 -0.02 1.19 16 34 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 0.64 7.65 -2.39 -0.02 0.62 16 36 H 0.07 0.66 7.67 -2.39 -0.02 0.64 16 37 H 0.12 2.31 8.05 -2.39 -0.02 2.30 16 38 H 0.10 2.37 8.09 -2.39 -0.02 2.35 16 39 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 41 H 0.04 2.18 6.94 -2.39 -0.02 2.16 16 42 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 46 H 0.16 2.45 7.05 -2.91 -0.02 2.43 16 Total: -1.00 -82.80 379.78 4.77 -78.02 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.99 Total: 7.24 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.30 Total: 7.30 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -2.12 Total: -94.59 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -2.42 Total: -47.06 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -82.80 4.77 -78.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204768032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.979 kcal (2) G-P(sol) polarization free energy of solvation -82.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds