Wall clock time and date at job start Tue Mar 31 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99746 * 2 1 4 4 O 1.21474 * 120.00427 * 0.02562 * 3 2 1 5 5 C 1.47743 * 120.00141 * 180.02562 * 3 2 1 6 6 C 1.39662 * 120.11879 * 0.02562 * 5 3 2 7 7 C 1.37952 * 119.95761 * 180.02562 * 6 5 3 8 8 C 1.38297 * 120.21301 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.87425 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47104 * 0.02562 * 9 8 7 11 11 C 1.42900 * 114.00156 * 180.02562 * 10 9 8 12 12 H 1.09003 * 110.63927 * 29.29697 * 11 10 9 13 13 C 1.55156 * 110.72220 * 152.43799 * 11 10 9 14 14 C 1.55126 * 101.48429 * 153.73399 * 13 11 10 15 15 N 1.47424 * 104.94526 * 323.22476 * 14 13 11 16 16 C 1.36931 * 125.64673 * 203.96585 * 15 14 13 17 17 H 1.08005 * 119.99483 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00376 * 0.04121 * 16 15 14 19 19 N 1.31617 * 119.99710 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47063 * 60.00200 * 20 18 16 22 22 H 1.48497 * 109.46944 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47040 * 300.00049 * 20 18 16 24 24 C 1.47021 * 108.70128 * 24.00300 * 15 14 13 25 25 C 1.38823 * 120.24821 * 0.02562 * 8 7 6 26 26 O 1.35915 * 119.97769 * 179.97438 * 25 8 7 27 27 C 1.42901 * 116.99609 * 180.02562 * 26 25 8 28 28 C 1.38478 * 120.03408 * 0.25553 * 25 8 7 29 29 H 1.09001 * 109.46629 * 299.99480 * 1 2 3 30 30 H 1.08994 * 109.47296 * 60.00047 * 1 2 3 31 31 H 1.09000 * 109.46559 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.02085 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.89231 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47261 * 120.02143 * 9 8 7 35 35 H 1.09000 * 109.47206 * 240.02074 * 9 8 7 36 36 H 1.08999 * 111.00345 * 271.93989 * 13 11 10 37 37 H 1.08999 * 111.00423 * 35.79771 * 13 11 10 38 38 H 1.08999 * 110.41875 * 204.28931 * 14 13 11 39 39 H 1.09003 * 110.29907 * 82.09270 * 14 13 11 40 40 H 0.97005 * 119.99739 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.88255 * 239.52427 * 24 15 14 42 42 H 1.09003 * 109.88370 * 118.36085 * 24 15 14 43 43 H 1.08998 * 109.47043 * 59.99801 * 27 26 25 44 44 H 1.08996 * 109.46732 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47144 * 300.00202 * 27 26 25 46 46 H 1.08009 * 120.10164 * 179.74130 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3021 0.1080 -0.0017 7 6 5.6795 0.1842 -0.0017 8 6 6.3084 1.4159 -0.0011 9 6 7.8136 1.4902 -0.0005 10 8 8.3557 0.1681 -0.0013 11 6 9.7841 0.1256 -0.0002 12 1 10.1942 1.0030 0.5000 13 6 10.2941 -1.1772 0.6706 14 6 11.6742 -1.3575 -0.0145 15 7 11.4696 -0.9120 -1.4048 16 6 12.2191 -1.2963 -2.4844 17 1 11.9880 -0.9114 -3.4667 18 6 13.2757 -2.1808 -2.3164 19 7 13.5573 -2.6497 -1.1193 20 14 14.2976 -2.7056 -3.7894 21 1 14.9254 -1.5102 -4.4075 22 1 15.3563 -3.6482 -3.3467 23 1 13.4232 -3.3762 -4.7849 24 6 10.3281 0.0139 -1.4400 25 6 5.5583 2.5841 0.0000 26 8 6.1821 3.7916 0.0010 27 6 5.3485 4.9523 0.0027 28 6 4.1751 2.5196 0.0058 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.8142 -0.8554 -0.0017 33 1 6.2686 -0.7209 -0.0029 34 1 8.1515 2.0219 -0.8901 35 1 8.1508 2.0208 0.8899 36 1 10.4033 -1.0455 1.7470 37 1 9.6353 -2.0160 0.4459 38 1 11.9759 -2.4046 0.0079 39 1 12.4239 -0.7369 0.4763 40 1 14.2959 -3.2675 -1.0018 41 1 9.5536 -0.3774 -2.0996 42 1 10.6557 0.9931 -1.7896 43 1 4.7196 4.9467 0.8929 44 1 5.9713 5.8468 0.0029 45 1 4.7188 4.9486 -0.8870 46 1 3.5905 3.4277 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222820709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:25 Heat of formation + Delta-G solvation = -106.395389 kcal Electronic energy + Delta-G solvation = -28256.621304 eV Core-core repulsion = 24113.261168 eV Total energy + Delta-G solvation = -4143.360135 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03627 -40.15974 -38.45091 -37.57012 -36.74862 -35.87644 -32.73890 -31.84326 -30.51870 -29.22661 -28.54993 -27.68914 -27.06858 -26.31877 -24.31106 -22.97381 -22.44680 -21.06695 -20.22786 -20.06647 -18.89857 -17.54100 -16.95743 -16.78646 -16.69943 -16.57457 -16.12827 -15.92716 -15.71863 -14.98562 -14.66629 -14.44257 -14.16348 -13.96437 -13.84421 -13.75356 -13.40091 -12.84347 -12.72117 -12.53295 -12.39609 -12.17970 -11.82072 -11.62634 -11.50290 -11.40309 -11.34686 -11.16748 -11.10853 -10.94898 -10.80714 -10.74196 -10.27465 -10.13356 -9.76068 -9.53713 -9.35574 -9.02308 -8.63873 -8.45680 -6.82662 -5.64152 -3.05924 0.36073 1.13549 2.23070 2.31028 2.96452 3.42176 3.45962 3.47428 3.47631 3.72769 4.32631 4.50865 4.59194 4.70427 4.73516 4.78617 4.81907 4.87151 4.92768 4.99343 5.14409 5.19413 5.25232 5.39889 5.41368 5.51248 5.57029 5.59524 5.66582 5.76311 5.77483 5.88093 5.97977 6.05332 6.14348 6.35669 6.46408 6.55333 6.60143 6.66604 6.74559 7.01011 7.38727 7.49983 7.60369 7.63569 7.86172 8.36918 9.23012 9.83737 10.48085 11.39927 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002170 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.872659 B =12902.633598 C =13686.372720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.512 3.488 4 O -0.510 6.510 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.071 4.071 8 C -0.071 4.071 9 C 0.106 3.894 10 O -0.376 6.376 11 C 0.078 3.922 12 H 0.064 0.936 13 C -0.138 4.138 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.117 3.883 25 C 0.118 3.882 26 O -0.310 6.310 27 C 0.025 3.975 28 C -0.146 4.146 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.013 0.987 40 H 0.253 0.747 41 H 0.034 0.966 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.231 10.055 5.710 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.268 6.268 3 C 0.358 3.642 4 O -0.399 6.399 5 C -0.101 4.101 6 C -0.113 4.113 7 C -0.089 4.089 8 C -0.072 4.072 9 C 0.029 3.971 10 O -0.295 6.295 11 C 0.020 3.980 12 H 0.083 0.917 13 C -0.176 4.176 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.010 4.010 25 C 0.073 3.927 26 O -0.223 6.223 27 C -0.070 4.070 28 C -0.165 4.165 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -23.194 10.094 5.659 25.921 hybrid contribution 0.144 0.340 -0.784 0.866 sum -23.051 10.434 4.875 25.767 Atomic orbital electron populations 1.23308 0.75818 1.03951 1.02635 1.86562 1.23652 1.32441 1.84150 1.21221 0.89119 0.81434 0.72441 1.90818 1.66893 1.36103 1.46092 1.18779 0.88738 0.94425 1.08117 1.21440 0.93819 0.97844 0.98159 1.21009 0.93628 0.97887 0.96363 1.19470 0.95444 0.90911 1.01378 1.21055 0.88652 0.86018 1.01360 1.87844 1.21267 1.25247 1.95168 1.23260 0.78512 0.99140 0.97065 0.91748 1.23191 1.00176 0.95728 0.98539 1.21999 0.89389 1.03250 0.82635 1.44373 1.33018 1.50765 1.04758 1.19039 1.07709 1.21234 0.86992 0.90512 1.24794 0.98959 0.99964 0.97016 1.69766 1.31518 1.36063 1.19899 0.86128 0.79667 0.78098 0.81462 1.21234 1.21555 1.21132 1.21704 0.91223 0.93663 0.94364 1.18481 0.90121 0.85375 0.98737 1.86122 1.35417 1.12077 1.88713 1.23120 0.96111 0.86220 1.01576 1.21142 0.92932 0.98073 1.04341 0.91790 0.91765 0.87777 0.84089 0.82812 0.91334 0.91559 0.91936 0.91091 0.87171 0.96875 0.93641 0.94796 0.96176 0.92473 0.87875 0.92435 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.44 9.81 -40.51 -0.40 -3.83 16 3 C 0.51 5.89 7.90 34.62 0.27 6.16 16 4 O -0.51 -6.76 16.14 -19.25 -0.31 -7.07 16 5 C -0.10 -1.12 5.87 -105.00 -0.62 -1.74 16 6 C -0.09 -1.01 9.61 -39.15 -0.38 -1.38 16 7 C -0.07 -0.85 9.36 -39.66 -0.37 -1.22 16 8 C -0.07 -0.90 5.90 -104.38 -0.62 -1.51 16 9 C 0.11 1.43 5.64 36.00 0.20 1.63 16 10 O -0.38 -6.07 8.53 -35.23 -0.30 -6.37 16 11 C 0.08 1.41 3.41 -24.90 -0.08 1.32 16 12 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 13 C -0.14 -2.66 6.83 -24.47 -0.17 -2.83 16 14 C 0.15 3.71 5.89 -2.41 -0.01 3.70 16 15 N -0.60 -15.74 3.40 -169.93 -0.58 -16.31 16 16 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 17 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 20 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.12 2.53 7.02 -3.06 -0.02 2.51 16 25 C 0.12 1.38 6.65 -39.28 -0.26 1.12 16 26 O -0.31 -3.35 9.91 -19.47 -0.19 -3.54 16 27 C 0.02 0.17 9.81 101.05 0.99 1.17 16 28 C -0.15 -1.61 8.58 -39.01 -0.33 -1.95 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.14 1.26 7.61 -52.49 -0.40 0.86 16 33 H 0.15 1.87 6.99 -52.49 -0.37 1.50 16 34 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.11 3.01 5.87 -51.93 -0.31 2.70 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 46 H 0.14 1.41 5.88 -52.48 -0.31 1.10 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -32.74 382.64 -7.83 -40.57 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.77 Total: -1.37 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.58 Total: 1.43 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.02 Total: -42.72 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.20 Total: -20.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.74 -7.83 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222820709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.826 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds