Wall clock time and date at job start Tue Mar 31 2020 18:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99746 * 2 1 4 4 O 1.21474 * 120.00427 * 0.02562 * 3 2 1 5 5 C 1.47743 * 120.00141 * 180.02562 * 3 2 1 6 6 C 1.39662 * 120.11879 * 0.02562 * 5 3 2 7 7 C 1.37952 * 119.95761 * 180.02562 * 6 5 3 8 8 C 1.38297 * 120.21301 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.87425 * 179.97438 * 8 7 6 10 10 O 1.42895 * 109.47104 * 0.02562 * 9 8 7 11 11 C 1.42900 * 114.00156 * 180.02562 * 10 9 8 12 12 H 1.09003 * 110.63927 * 29.29697 * 11 10 9 13 13 C 1.55156 * 110.72220 * 152.43799 * 11 10 9 14 14 C 1.55126 * 101.48429 * 153.73399 * 13 11 10 15 15 N 1.47424 * 104.94526 * 323.22476 * 14 13 11 16 16 C 1.36931 * 125.64673 * 203.96585 * 15 14 13 17 17 H 1.08005 * 119.99483 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00376 * 0.04121 * 16 15 14 19 19 N 1.31617 * 119.99710 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47063 * 60.00200 * 20 18 16 22 22 H 1.48497 * 109.46944 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47040 * 300.00049 * 20 18 16 24 24 C 1.47021 * 108.70128 * 24.00300 * 15 14 13 25 25 C 1.38823 * 120.24821 * 0.02562 * 8 7 6 26 26 O 1.35915 * 119.97769 * 179.97438 * 25 8 7 27 27 C 1.42901 * 116.99609 * 180.02562 * 26 25 8 28 28 C 1.38478 * 120.03408 * 0.25553 * 25 8 7 29 29 H 1.09001 * 109.46629 * 299.99480 * 1 2 3 30 30 H 1.08994 * 109.47296 * 60.00047 * 1 2 3 31 31 H 1.09000 * 109.46559 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.02085 * 359.97438 * 6 5 3 33 33 H 1.07996 * 119.89231 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47261 * 120.02143 * 9 8 7 35 35 H 1.09000 * 109.47206 * 240.02074 * 9 8 7 36 36 H 1.08999 * 111.00345 * 271.93989 * 13 11 10 37 37 H 1.08999 * 111.00423 * 35.79771 * 13 11 10 38 38 H 1.08999 * 110.41875 * 204.28931 * 14 13 11 39 39 H 1.09003 * 110.29907 * 82.09270 * 14 13 11 40 40 H 0.97005 * 119.99739 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.88255 * 239.52427 * 24 15 14 42 42 H 1.09003 * 109.88370 * 118.36085 * 24 15 14 43 43 H 1.08998 * 109.47043 * 59.99801 * 27 26 25 44 44 H 1.08996 * 109.46732 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47144 * 300.00202 * 27 26 25 46 46 H 1.08009 * 120.10164 * 179.74130 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3021 0.1080 -0.0017 7 6 5.6795 0.1842 -0.0017 8 6 6.3084 1.4159 -0.0011 9 6 7.8136 1.4902 -0.0005 10 8 8.3557 0.1681 -0.0013 11 6 9.7841 0.1256 -0.0002 12 1 10.1942 1.0030 0.5000 13 6 10.2941 -1.1772 0.6706 14 6 11.6742 -1.3575 -0.0145 15 7 11.4696 -0.9120 -1.4048 16 6 12.2191 -1.2963 -2.4844 17 1 11.9880 -0.9114 -3.4667 18 6 13.2757 -2.1808 -2.3164 19 7 13.5573 -2.6497 -1.1193 20 14 14.2976 -2.7056 -3.7894 21 1 14.9254 -1.5102 -4.4075 22 1 15.3563 -3.6482 -3.3467 23 1 13.4232 -3.3762 -4.7849 24 6 10.3281 0.0139 -1.4400 25 6 5.5583 2.5841 0.0000 26 8 6.1821 3.7916 0.0010 27 6 5.3485 4.9523 0.0027 28 6 4.1751 2.5196 0.0058 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.8142 -0.8554 -0.0017 33 1 6.2686 -0.7209 -0.0029 34 1 8.1515 2.0219 -0.8901 35 1 8.1508 2.0208 0.8899 36 1 10.4033 -1.0455 1.7470 37 1 9.6353 -2.0160 0.4459 38 1 11.9759 -2.4046 0.0079 39 1 12.4239 -0.7369 0.4763 40 1 14.2959 -3.2675 -1.0018 41 1 9.5536 -0.3774 -2.0996 42 1 10.6557 0.9931 -1.7896 43 1 4.7196 4.9467 0.8929 44 1 5.9713 5.8468 0.0029 45 1 4.7188 4.9486 -0.8870 46 1 3.5905 3.4277 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222820709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:24 Heat of formation + Delta-G solvation = -125.353985 kcal Electronic energy + Delta-G solvation = -28257.443410 eV Core-core repulsion = 24113.261168 eV Total energy + Delta-G solvation = -4144.182242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87568 -40.99023 -39.85381 -38.48583 -37.65664 -37.35219 -34.34647 -33.21107 -31.35397 -31.05631 -29.31648 -28.86224 -28.16497 -27.33588 -26.21260 -23.89060 -23.30349 -22.11341 -21.87227 -21.66761 -19.70141 -18.97369 -18.37153 -17.95624 -17.47137 -17.38644 -16.97531 -16.91791 -16.81127 -16.55381 -16.17669 -15.70068 -15.33250 -15.18452 -14.80622 -14.57419 -14.48438 -14.24502 -14.02198 -13.64979 -13.55450 -13.18690 -13.13292 -12.97940 -12.88331 -12.66843 -12.53605 -12.39333 -12.30519 -12.10981 -12.04929 -11.96452 -11.86165 -11.74123 -11.66981 -11.28985 -10.73846 -10.65894 -10.00445 -9.31624 -8.89456 -7.76971 -5.21965 -0.52414 0.28211 1.35254 1.47840 1.51309 1.57705 1.57827 2.24965 2.44183 2.56842 2.60389 3.33124 3.50867 3.70716 3.76273 3.80799 3.89956 4.00564 4.06776 4.12765 4.22340 4.28143 4.32378 4.32650 4.35746 4.36723 4.50067 4.64878 4.67724 4.69645 4.74794 4.76129 4.80015 4.95106 5.00227 5.04883 5.09194 5.15418 5.24531 5.31726 5.46128 5.60048 5.63609 5.80281 6.23692 6.26868 6.33741 6.56253 7.10968 7.77459 8.40809 9.24813 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002170 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.872659 B =12902.633598 C =13686.372720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.532 6.532 5 C -0.107 4.107 6 C -0.088 4.088 7 C -0.078 4.078 8 C -0.087 4.087 9 C 0.106 3.894 10 O -0.378 6.378 11 C 0.095 3.905 12 H 0.085 0.915 13 C -0.123 4.123 14 C 0.153 3.847 15 N -0.625 5.625 16 C -0.242 4.242 17 H 0.079 0.921 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.113 3.887 25 C 0.119 3.881 26 O -0.324 6.324 27 C 0.016 3.984 28 C -0.146 4.146 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.078 0.922 39 H -0.005 1.005 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.063 0.937 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.675 10.731 5.776 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.424 6.424 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.095 4.095 8 C -0.087 4.087 9 C 0.030 3.970 10 O -0.297 6.297 11 C 0.037 3.963 12 H 0.103 0.897 13 C -0.162 4.162 14 C 0.028 3.972 15 N -0.352 5.352 16 C -0.371 4.371 17 H 0.096 0.904 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.013 4.013 25 C 0.073 3.927 26 O -0.237 6.237 27 C -0.078 4.078 28 C -0.165 4.165 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.674 10.785 5.726 27.530 hybrid contribution 0.477 0.181 -0.812 0.959 sum -24.198 10.966 4.914 27.017 Atomic orbital electron populations 1.23632 0.73975 1.06054 1.02789 1.86552 1.25472 1.31429 1.83592 1.21241 0.89130 0.81622 0.71889 1.90803 1.67345 1.36881 1.47355 1.18924 0.88964 0.94765 1.08144 1.21556 0.93302 0.98474 0.97273 1.21011 0.94135 0.97542 0.96847 1.19480 0.94906 0.91674 1.02684 1.21153 0.89330 0.84673 1.01882 1.87835 1.19753 1.27045 1.95017 1.22959 0.79722 0.99139 0.94454 0.89740 1.22995 0.96868 0.96420 0.99886 1.21795 0.91970 1.00770 0.82630 1.44682 1.33889 1.51787 1.04879 1.19405 1.08316 1.21453 0.87935 0.90355 1.25654 1.00244 1.00209 0.99779 1.70018 1.31711 1.36392 1.21648 0.85095 0.77908 0.77660 0.78308 1.20425 1.21712 1.20335 1.21866 0.89798 0.92739 0.96903 1.18469 0.90180 0.85605 0.98440 1.86104 1.36554 1.12523 1.88546 1.23401 0.96591 0.85537 1.02285 1.21266 0.92822 0.98501 1.03874 0.91596 0.91707 0.84753 0.82417 0.83259 0.91537 0.90334 0.88888 0.91409 0.90447 0.98679 0.94155 0.95502 0.95715 0.91605 0.85839 0.91863 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.33 9.81 -56.16 -0.55 -6.89 16 3 C 0.51 11.19 7.90 70.34 0.56 11.75 16 4 O -0.53 -13.60 16.14 19.92 0.32 -13.28 16 5 C -0.11 -2.28 5.87 -20.11 -0.12 -2.40 16 6 C -0.09 -1.76 9.61 22.55 0.22 -1.54 16 7 C -0.08 -1.76 9.36 22.22 0.21 -1.55 16 8 C -0.09 -2.08 5.90 -19.71 -0.12 -2.19 16 9 C 0.11 2.70 5.64 71.24 0.40 3.10 16 10 O -0.38 -11.59 8.53 -148.98 -1.27 -12.86 16 11 C 0.10 3.31 3.41 31.78 0.11 3.42 16 12 H 0.08 2.63 7.85 -2.39 -0.02 2.61 16 13 C -0.12 -4.63 6.83 32.06 0.22 -4.42 16 14 C 0.15 7.60 5.89 86.93 0.51 8.11 16 15 N -0.63 -33.09 3.40 -691.55 -2.35 -35.44 16 16 C -0.24 -13.88 10.27 84.03 0.86 -13.01 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 19 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 20 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.11 4.83 7.02 86.73 0.61 5.44 16 25 C 0.12 2.61 6.65 22.47 0.15 2.76 16 26 O -0.32 -6.49 9.91 -92.59 -0.92 -7.41 16 27 C 0.02 0.20 9.81 113.37 1.11 1.31 16 28 C -0.15 -3.03 8.58 22.64 0.19 -2.84 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.16 2.53 7.61 -2.91 -0.02 2.51 16 33 H 0.15 3.49 6.99 -2.91 -0.02 3.47 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.08 4.36 5.87 -2.39 -0.01 4.35 16 39 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 0.69 7.65 -2.39 -0.02 0.68 16 44 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 0.70 7.67 -2.39 -0.02 0.69 16 46 H 0.15 2.80 5.88 -2.91 -0.02 2.78 16 Total: -1.00 -70.89 382.64 5.04 -65.85 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.98 Total: 12.36 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 6.58 Total: 6.12 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -2.13 Total: -91.85 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -2.42 Total: -40.43 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -70.89 5.04 -65.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222820709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.507 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds