Wall clock time and date at job start Tue Mar 31 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34748 * 117.00051 * 2 1 4 4 O 1.21507 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.47473 * 120.00319 * 180.02562 * 3 2 1 6 6 C 1.39814 * 120.09086 * 0.02562 * 5 3 2 7 7 C 1.37650 * 119.90678 * 179.97438 * 6 5 3 8 8 C 1.39035 * 120.09446 * 359.97438 * 7 6 5 9 9 O 1.35694 * 119.90997 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99818 * 359.97438 * 9 8 7 11 11 C 1.38996 * 120.18490 * 359.78817 * 8 7 6 12 12 C 1.37701 * 120.09311 * 0.46476 * 11 8 7 13 13 C 1.50693 * 120.04932 * 179.79674 * 12 11 8 14 14 O 1.42908 * 109.47081 * 359.71904 * 13 12 11 15 15 C 1.42900 * 113.99997 * 180.02562 * 14 13 12 16 16 C 1.53514 * 114.16934 * 150.00256 * 15 14 13 17 17 N 1.47483 * 87.92777 * 87.81254 * 16 15 14 18 18 C 1.46903 * 110.99717 * 138.70421 * 17 16 15 19 19 C 1.50694 * 109.47066 * 169.99804 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47480 * 87.83900 * 27.00973 * 17 16 15 28 28 H 1.09005 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47577 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47023 * 60.00684 * 1 2 3 31 31 H 1.08002 * 120.04325 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.95680 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47217 * 300.00123 * 10 9 8 34 34 H 1.08999 * 109.46985 * 60.00470 * 10 9 8 35 35 H 1.09005 * 109.46971 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.95445 * 180.26197 * 11 8 7 37 37 H 1.09003 * 109.47110 * 239.72716 * 13 12 11 38 38 H 1.08996 * 109.47699 * 119.72102 * 13 12 11 39 39 H 1.09004 * 113.25466 * 17.04971 * 15 14 13 40 40 H 1.09000 * 113.47331 * 333.04932 * 16 15 14 41 41 H 1.08995 * 113.52785 * 202.58522 * 16 15 14 42 42 H 1.09007 * 109.47052 * 49.99488 * 18 17 16 43 43 H 1.09003 * 109.46808 * 290.00181 * 18 17 16 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.47132 * 87.75237 * 27 17 16 46 46 H 1.09000 * 113.47538 * 218.21976 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5364 1.2779 -0.0006 6 6 4.2998 0.1065 -0.0017 7 6 5.6742 0.1830 -0.0027 8 6 6.3034 1.4229 -0.0033 9 8 7.6585 1.4939 -0.0048 10 6 8.3730 0.2564 -0.0053 11 6 5.5482 2.5898 -0.0072 12 6 4.1729 2.5222 -0.0009 13 6 3.3552 3.7880 -0.0005 14 8 4.2285 4.9192 -0.0007 15 6 3.5503 6.1771 0.0002 16 6 4.3201 7.3057 0.7003 17 7 4.9825 7.5807 -0.5883 18 6 5.0939 9.0263 -0.8250 19 6 5.9837 9.2732 -2.0159 20 1 6.4230 8.4397 -2.5439 21 6 6.2380 10.5633 -2.4308 22 7 5.7035 11.5783 -1.7876 23 14 7.3416 10.8694 -3.9065 24 1 8.7493 11.0025 -3.4528 25 1 7.2318 9.7292 -4.8517 26 1 6.9209 12.1198 -4.5883 27 6 3.7901 7.0262 -1.2560 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.8118 -0.8569 -0.0025 32 1 6.2647 -0.7213 -0.0031 33 1 8.1107 -0.3150 0.8851 34 1 8.1087 -0.3154 -0.8948 35 1 9.4447 0.4556 -0.0061 36 1 6.0409 3.5509 -0.0118 37 1 2.7268 3.8144 0.8898 38 1 2.7261 3.8145 -0.8902 39 1 2.5034 6.1013 0.2946 40 1 5.0029 6.9515 1.4727 41 1 3.6820 8.1202 1.0431 42 1 5.5225 9.5065 0.0547 43 1 4.1042 9.4400 -1.0189 44 1 5.8827 12.4859 -2.0793 45 1 3.0098 7.7657 -1.4357 46 1 4.0238 6.4352 -2.1415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223007174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:16 Heat of formation + Delta-G solvation = -89.612205 kcal Electronic energy + Delta-G solvation = -28418.262074 eV Core-core repulsion = 24275.629712 eV Total energy + Delta-G solvation = -4142.632362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04200 -40.07242 -39.47904 -37.99020 -36.57974 -36.22392 -32.81805 -31.87926 -31.23224 -29.10093 -28.44019 -27.39341 -26.12663 -25.32505 -24.87840 -23.86938 -21.98340 -21.62040 -20.89764 -19.28096 -18.30761 -17.96764 -17.27907 -16.68356 -16.63925 -16.29223 -16.05308 -15.84410 -15.33996 -15.23717 -14.84203 -14.48718 -14.09154 -13.89595 -13.83229 -13.63218 -13.44992 -13.18762 -13.00330 -12.78155 -12.47238 -12.35134 -12.06225 -12.00319 -11.71415 -11.42795 -11.16446 -11.12210 -11.03819 -11.00966 -10.73674 -10.50066 -10.36762 -10.15230 -9.56946 -9.32598 -9.17088 -8.90507 -8.58357 -8.36150 -7.70645 -5.97149 -3.97414 0.48997 1.05529 2.32211 2.42691 2.93216 3.37194 3.42269 3.46431 3.47690 3.60393 4.38616 4.48336 4.49509 4.53002 4.76722 4.80871 4.82829 4.88714 4.89072 4.97148 5.08886 5.12752 5.17297 5.21421 5.26806 5.38237 5.40826 5.51951 5.59799 5.75572 5.76343 5.91452 6.01895 6.05158 6.10230 6.22408 6.27624 6.33549 6.38250 6.51976 6.77500 7.06547 7.25118 7.48279 7.56054 7.75307 7.95712 8.20410 8.55969 9.10745 9.66302 11.14105 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.002640 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.156095 B =10601.717916 C =12345.749799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.511 3.489 4 O -0.505 6.505 5 C -0.173 4.173 6 C -0.019 4.019 7 C -0.230 4.230 8 C 0.168 3.832 9 O -0.306 6.306 10 C 0.024 3.976 11 C -0.140 4.140 12 C 0.024 3.976 13 C 0.101 3.899 14 O -0.352 6.352 15 C 0.058 3.942 16 C -0.006 4.006 17 N -0.455 5.455 18 C 0.156 3.844 19 C -0.500 4.500 20 H 0.063 0.937 21 C 0.052 3.948 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.273 1.273 26 H -0.288 1.288 27 C -0.008 4.008 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.002 0.998 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -29.222 6.176 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.357 3.643 4 O -0.395 6.395 5 C -0.174 4.174 6 C -0.037 4.037 7 C -0.249 4.249 8 C 0.122 3.878 9 O -0.218 6.218 10 C -0.071 4.071 11 C -0.158 4.158 12 C 0.024 3.976 13 C 0.025 3.975 14 O -0.270 6.270 15 C 0.000 4.000 16 C -0.136 4.136 17 N -0.178 5.178 18 C 0.029 3.971 19 C -0.539 4.539 20 H 0.082 0.918 21 C -0.148 4.148 22 N -0.542 5.542 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.198 1.198 26 H -0.214 1.214 27 C -0.138 4.138 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.177 0.823 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.020 0.980 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.317 -28.814 6.015 29.911 hybrid contribution -0.628 0.541 -0.666 1.063 sum -5.945 -28.273 5.349 29.382 Atomic orbital electron populations 1.23269 0.75961 1.03644 1.02775 1.86525 1.23556 1.32783 1.84634 1.21083 0.88935 0.81412 0.72860 1.90851 1.66924 1.35596 1.46095 1.18653 0.88957 0.93929 1.15894 1.21087 0.92842 0.97626 0.92192 1.21208 0.95527 0.96850 1.11275 1.19419 0.82851 0.93884 0.91674 1.86134 1.15376 1.32961 1.87281 1.23155 0.97198 0.85243 1.01478 1.20372 0.91964 0.98335 1.05116 1.19555 0.93143 0.92790 0.92126 1.21473 0.90687 0.83000 1.02379 1.87897 1.32069 1.12425 1.94653 1.23272 0.94766 0.83528 0.98472 1.24037 0.97416 0.95364 0.96785 1.69030 1.29059 1.18332 1.01365 1.20294 0.96505 0.82533 0.97718 1.21125 1.28366 0.92025 1.12372 0.91841 1.25014 0.96413 0.96094 0.97323 1.69962 1.44846 0.98637 1.40790 0.86477 0.80755 0.77472 0.82601 1.20632 1.19821 1.21365 1.24225 0.94335 0.97387 0.97823 0.88092 0.91783 0.91733 0.84151 0.84614 0.92380 0.92330 0.87857 0.82318 0.90525 0.90370 0.90881 0.90094 0.91217 0.95373 0.98000 0.93008 0.91228 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.31 16 2 O -0.36 -3.40 9.81 -40.62 -0.40 -3.79 16 3 C 0.51 5.98 7.87 34.49 0.27 6.25 16 4 O -0.51 -6.92 13.18 -19.27 -0.25 -7.17 16 5 C -0.17 -1.99 5.87 -104.97 -0.62 -2.61 16 6 C -0.02 -0.18 9.61 -39.21 -0.38 -0.55 16 7 C -0.23 -2.05 9.01 -39.50 -0.36 -2.41 16 8 C 0.17 1.93 6.70 -39.01 -0.26 1.67 16 9 O -0.31 -3.40 10.48 -18.79 -0.20 -3.60 16 10 C 0.02 0.15 9.81 101.05 0.99 1.14 16 11 C -0.14 -1.89 9.30 -39.50 -0.37 -2.26 16 12 C 0.02 0.32 5.91 -104.25 -0.62 -0.29 16 13 C 0.10 1.44 4.42 36.00 0.16 1.59 16 14 O -0.35 -5.94 8.87 -35.23 -0.31 -6.25 16 15 C 0.06 0.99 4.65 -26.20 -0.12 0.86 16 16 C -0.01 -0.12 7.52 -7.53 -0.06 -0.18 16 17 N -0.45 -10.62 6.32 -246.08 -1.55 -12.17 16 18 C 0.16 4.25 4.57 -4.98 -0.02 4.22 16 19 C -0.50 -14.87 9.39 -34.44 -0.32 -15.19 16 20 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 23 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 C -0.01 -0.16 7.56 -7.54 -0.06 -0.22 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.14 0.95 7.60 -52.49 -0.40 0.55 16 32 H 0.14 0.81 6.28 -52.49 -0.33 0.48 16 33 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 34 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.16 2.45 6.99 -52.49 -0.37 2.08 16 37 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 38 H 0.08 1.14 7.34 -51.93 -0.38 0.76 16 39 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 42 H 0.03 0.81 8.08 -51.92 -0.42 0.40 16 43 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.07 1.37 7.42 -51.93 -0.39 0.99 16 46 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -34.75 385.42 -8.71 -43.47 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.74 Total: -1.69 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.78 Total: -5.20 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.82 Total: -39.04 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.16 Total: -20.82 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.75 -8.71 -43.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223007174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.144 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds