Wall clock time and date at job start Tue Mar 31 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34748 * 117.00051 * 2 1 4 4 O 1.21507 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.47473 * 120.00319 * 180.02562 * 3 2 1 6 6 C 1.39814 * 120.09086 * 0.02562 * 5 3 2 7 7 C 1.37650 * 119.90678 * 179.97438 * 6 5 3 8 8 C 1.39035 * 120.09446 * 359.97438 * 7 6 5 9 9 O 1.35694 * 119.90997 * 180.02562 * 8 7 6 10 10 C 1.42904 * 116.99818 * 359.97438 * 9 8 7 11 11 C 1.38996 * 120.18490 * 359.78817 * 8 7 6 12 12 C 1.37701 * 120.09311 * 0.46476 * 11 8 7 13 13 C 1.50693 * 120.04932 * 179.79674 * 12 11 8 14 14 O 1.42908 * 109.47081 * 359.71904 * 13 12 11 15 15 C 1.42900 * 113.99997 * 180.02562 * 14 13 12 16 16 C 1.53514 * 114.16934 * 150.00256 * 15 14 13 17 17 N 1.47483 * 87.92777 * 87.81254 * 16 15 14 18 18 C 1.46903 * 110.99717 * 138.70421 * 17 16 15 19 19 C 1.50694 * 109.47066 * 169.99804 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47480 * 87.83900 * 27.00973 * 17 16 15 28 28 H 1.09005 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47577 * 300.00160 * 1 2 3 30 30 H 1.08998 * 109.47023 * 60.00684 * 1 2 3 31 31 H 1.08002 * 120.04325 * 0.02562 * 6 5 3 32 32 H 1.08002 * 119.95680 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47217 * 300.00123 * 10 9 8 34 34 H 1.08999 * 109.46985 * 60.00470 * 10 9 8 35 35 H 1.09005 * 109.46971 * 180.02562 * 10 9 8 36 36 H 1.08000 * 119.95445 * 180.26197 * 11 8 7 37 37 H 1.09003 * 109.47110 * 239.72716 * 13 12 11 38 38 H 1.08996 * 109.47699 * 119.72102 * 13 12 11 39 39 H 1.09004 * 113.25466 * 17.04971 * 15 14 13 40 40 H 1.09000 * 113.47331 * 333.04932 * 16 15 14 41 41 H 1.08995 * 113.52785 * 202.58522 * 16 15 14 42 42 H 1.09007 * 109.47052 * 49.99488 * 18 17 16 43 43 H 1.09003 * 109.46808 * 290.00181 * 18 17 16 44 44 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.47132 * 87.75237 * 27 17 16 46 46 H 1.09000 * 113.47538 * 218.21976 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5364 1.2779 -0.0006 6 6 4.2998 0.1065 -0.0017 7 6 5.6742 0.1830 -0.0027 8 6 6.3034 1.4229 -0.0033 9 8 7.6585 1.4939 -0.0048 10 6 8.3730 0.2564 -0.0053 11 6 5.5482 2.5898 -0.0072 12 6 4.1729 2.5222 -0.0009 13 6 3.3552 3.7880 -0.0005 14 8 4.2285 4.9192 -0.0007 15 6 3.5503 6.1771 0.0002 16 6 4.3201 7.3057 0.7003 17 7 4.9825 7.5807 -0.5883 18 6 5.0939 9.0263 -0.8250 19 6 5.9837 9.2732 -2.0159 20 1 6.4230 8.4397 -2.5439 21 6 6.2380 10.5633 -2.4308 22 7 5.7035 11.5783 -1.7876 23 14 7.3416 10.8694 -3.9065 24 1 8.7493 11.0025 -3.4528 25 1 7.2318 9.7292 -4.8517 26 1 6.9209 12.1198 -4.5883 27 6 3.7901 7.0262 -1.2560 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.8118 -0.8569 -0.0025 32 1 6.2647 -0.7213 -0.0031 33 1 8.1107 -0.3150 0.8851 34 1 8.1087 -0.3154 -0.8948 35 1 9.4447 0.4556 -0.0061 36 1 6.0409 3.5509 -0.0118 37 1 2.7268 3.8144 0.8898 38 1 2.7261 3.8145 -0.8902 39 1 2.5034 6.1013 0.2946 40 1 5.0029 6.9515 1.4727 41 1 3.6820 8.1202 1.0431 42 1 5.5225 9.5065 0.0547 43 1 4.1042 9.4400 -1.0189 44 1 5.8827 12.4859 -2.0793 45 1 3.0098 7.7657 -1.4357 46 1 4.0238 6.4352 -2.1415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223007174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:15 Heat of formation + Delta-G solvation = -114.165506 kcal Electronic energy + Delta-G solvation = -28419.326785 eV Core-core repulsion = 24275.629712 eV Total energy + Delta-G solvation = -4143.697073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89373 -41.06203 -40.84171 -38.91321 -37.51968 -37.40134 -35.01141 -32.88165 -32.05757 -30.97957 -29.13870 -27.97451 -27.37332 -26.97155 -26.57835 -24.67501 -23.62061 -22.85051 -21.76253 -20.78896 -19.15389 -18.78121 -18.55775 -18.06926 -17.80572 -17.46539 -17.09334 -16.76180 -16.72011 -16.47880 -16.27561 -15.61745 -15.48430 -15.14271 -15.12482 -14.61747 -14.52023 -14.38340 -13.94860 -13.75360 -13.70649 -13.54550 -13.40911 -13.02673 -12.99722 -12.87754 -12.68300 -12.43662 -12.33327 -12.10891 -11.94802 -11.89280 -11.76050 -11.53699 -11.36533 -11.25563 -10.64816 -10.58852 -9.92219 -9.56083 -9.40875 -8.24260 -6.34361 -0.36531 0.22017 1.37479 1.39855 1.46086 1.51495 1.69143 2.25044 2.35763 2.38853 2.61678 3.07279 3.38750 3.44444 3.64830 3.71762 3.78701 3.96368 4.09816 4.22287 4.30722 4.32444 4.35866 4.38143 4.43439 4.43858 4.45478 4.48498 4.55119 4.66177 4.69045 4.74297 4.76953 4.84123 4.95923 4.97235 5.00390 5.04329 5.15819 5.25922 5.40003 5.50154 5.57558 5.78917 6.07850 6.24233 6.34148 6.48513 6.68281 6.79695 7.34936 8.86941 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.002640 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.156095 B =10601.717916 C =12345.749799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.512 3.488 4 O -0.533 6.533 5 C -0.183 4.183 6 C -0.005 4.005 7 C -0.216 4.216 8 C 0.165 3.835 9 O -0.333 6.333 10 C 0.012 3.988 11 C -0.166 4.166 12 C 0.009 3.991 13 C 0.105 3.895 14 O -0.367 6.367 15 C 0.082 3.918 16 C -0.007 4.007 17 N -0.483 5.483 18 C 0.172 3.828 19 C -0.527 4.527 20 H 0.053 0.947 21 C 0.002 3.998 22 N -0.933 5.933 23 Si 0.971 3.029 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.276 1.276 27 C -0.012 4.012 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.001 0.999 43 H -0.015 1.015 44 H 0.266 0.734 45 H 0.072 0.928 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -32.416 5.851 33.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.359 3.641 4 O -0.425 6.425 5 C -0.185 4.185 6 C -0.023 4.023 7 C -0.234 4.234 8 C 0.118 3.882 9 O -0.245 6.245 10 C -0.081 4.081 11 C -0.185 4.185 12 C 0.008 3.992 13 C 0.030 3.970 14 O -0.286 6.286 15 C 0.023 3.977 16 C -0.136 4.136 17 N -0.206 5.206 18 C 0.045 3.955 19 C -0.565 4.565 20 H 0.071 0.929 21 C -0.196 4.196 22 N -0.574 5.574 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.192 1.192 26 H -0.201 1.201 27 C -0.142 4.142 28 H 0.154 0.846 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.019 0.981 43 H 0.002 0.998 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.339 -32.046 5.700 32.984 hybrid contribution -0.610 1.396 -0.523 1.610 sum -5.949 -30.651 5.177 31.649 Atomic orbital electron populations 1.23574 0.74304 1.05869 1.02552 1.86509 1.25112 1.31321 1.84039 1.21140 0.88994 0.81691 0.72230 1.90831 1.67486 1.36618 1.47537 1.18747 0.89284 0.94020 1.16407 1.21458 0.92849 0.97952 0.90042 1.21560 0.95683 0.96959 1.09191 1.19490 0.83214 0.94138 0.91367 1.86105 1.15356 1.35943 1.87133 1.23511 0.97439 0.83984 1.03194 1.20183 0.92452 0.98163 1.07673 1.19491 0.92995 0.93051 0.93620 1.21502 0.90522 0.82710 1.02310 1.87904 1.33285 1.12962 1.94442 1.23055 0.96099 0.83093 0.95448 1.24100 0.97672 0.96564 0.95270 1.68957 1.31687 1.15407 1.04518 1.19967 0.94799 0.84940 0.95806 1.21407 1.29376 0.92259 1.13489 0.92876 1.25936 0.97713 0.95614 1.00382 1.70071 1.45802 0.99177 1.42305 0.85360 0.78735 0.77722 0.78670 1.19694 1.19225 1.20122 1.24271 0.93139 0.97858 0.98890 0.84636 0.91941 0.92114 0.80948 0.80868 0.90437 0.90653 0.86696 0.85450 0.90120 0.90904 0.87438 0.89722 0.90144 0.98068 0.99774 0.92514 0.90960 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -5.88 9.81 -56.59 -0.55 -6.43 16 3 C 0.51 11.37 7.87 70.26 0.55 11.93 16 4 O -0.53 -14.40 13.18 19.81 0.26 -14.14 16 5 C -0.18 -4.01 5.87 -20.09 -0.12 -4.12 16 6 C -0.01 -0.08 9.61 22.51 0.22 0.14 16 7 C -0.22 -3.19 9.01 22.32 0.20 -2.99 16 8 C 0.16 3.66 6.70 22.64 0.15 3.81 16 9 O -0.33 -7.18 10.48 -90.14 -0.94 -8.13 16 10 C 0.01 0.13 9.81 113.37 1.11 1.24 16 11 C -0.17 -4.67 9.30 22.32 0.21 -4.46 16 12 C 0.01 0.24 5.91 -19.62 -0.12 0.13 16 13 C 0.11 3.07 4.42 71.23 0.31 3.38 16 14 O -0.37 -12.77 8.87 -148.98 -1.32 -14.09 16 15 C 0.08 2.79 4.65 30.94 0.14 2.93 16 16 C -0.01 -0.27 7.52 83.58 0.63 0.36 16 17 N -0.48 -23.43 6.32 -932.86 -5.89 -29.33 16 18 C 0.17 9.80 4.57 85.55 0.39 10.19 16 19 C -0.53 -32.34 9.39 25.60 0.24 -32.10 16 20 H 0.05 3.29 7.81 -2.91 -0.02 3.27 16 21 C 0.00 0.09 5.46 84.66 0.46 0.55 16 22 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 23 Si 0.97 46.58 29.54 68.60 2.03 48.61 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 27 C -0.01 -0.50 7.56 83.58 0.63 0.14 16 28 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.17 1.52 7.60 -2.91 -0.02 1.50 16 32 H 0.17 1.22 6.28 -2.91 -0.02 1.20 16 33 H 0.08 0.49 7.65 -2.39 -0.02 0.47 16 34 H 0.07 0.51 7.65 -2.39 -0.02 0.50 16 35 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.13 4.30 6.99 -2.91 -0.02 4.28 16 37 H 0.08 2.25 7.34 -2.39 -0.02 2.23 16 38 H 0.07 2.18 7.34 -2.39 -0.02 2.16 16 39 H 0.11 2.98 7.88 -2.38 -0.02 2.97 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 2.95 7.91 -2.39 -0.02 2.93 16 42 H 0.00 0.07 8.08 -2.38 -0.02 0.06 16 43 H -0.02 -0.91 7.30 -2.39 -0.02 -0.93 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.07 2.93 7.42 -2.39 -0.02 2.91 16 46 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -78.22 385.42 1.06 -77.16 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.99 Total: 11.52 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 6.22 Total: -7.36 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -5.61 Total: -87.14 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -2.56 Total: -42.80 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.22 1.06 -77.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223007174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.007 kcal (2) G-P(sol) polarization free energy of solvation -78.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds