Wall clock time and date at job start Tue Mar 31 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00200 * 2 1 4 4 O 1.21512 * 119.99608 * 359.97438 * 3 2 1 5 5 C 1.47400 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.39766 * 120.20062 * 359.97438 * 5 3 2 7 7 C 1.37762 * 119.90345 * 179.97438 * 6 5 3 8 8 C 1.38564 * 120.30656 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.79473 * 180.02562 * 8 7 6 10 10 O 1.42906 * 109.47162 * 89.99746 * 9 8 7 11 11 C 1.42893 * 113.99836 * 179.97438 * 10 9 8 12 12 H 1.08993 * 110.78196 * 31.79010 * 11 10 9 13 13 C 1.55165 * 110.71605 * 155.02613 * 11 10 9 14 14 C 1.54915 * 101.57980 * 153.86634 * 13 11 10 15 15 N 1.47425 * 104.83334 * 322.99105 * 14 13 11 16 16 C 1.36936 * 125.64929 * 204.09758 * 15 14 13 17 17 H 1.08003 * 119.99909 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99697 * 0.03486 * 16 15 14 19 19 N 1.31617 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99553 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47564 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47227 * 120.00302 * 20 18 16 23 23 H 1.48508 * 109.47074 * 239.99933 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 13 25 25 C 1.38049 * 120.40619 * 0.27188 * 8 7 6 26 26 C 1.38707 * 120.08478 * 359.45562 * 25 8 7 27 27 O 1.35648 * 120.15362 * 180.24714 * 26 25 8 28 28 C 1.42901 * 116.99856 * 0.29747 * 27 26 25 29 29 H 1.08995 * 109.47426 * 300.00055 * 1 2 3 30 30 H 1.08998 * 109.47118 * 60.00271 * 1 2 3 31 31 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.04420 * 359.95847 * 6 5 3 33 33 H 1.08003 * 119.84074 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47178 * 330.00325 * 9 8 7 35 35 H 1.08995 * 109.47311 * 209.99712 * 9 8 7 36 36 H 1.08995 * 111.00547 * 271.93966 * 13 11 10 37 37 H 1.09001 * 111.00003 * 35.79546 * 13 11 10 38 38 H 1.08997 * 110.36462 * 204.15099 * 14 13 11 39 39 H 1.08999 * 110.46102 * 81.87572 * 14 13 11 40 40 H 0.97003 * 119.99386 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 42 42 H 1.08998 * 109.88661 * 118.35607 * 24 15 14 43 43 H 1.07998 * 119.95652 * 179.70336 * 25 8 7 44 44 H 1.08995 * 109.46800 * 180.02562 * 28 27 26 45 45 H 1.09004 * 109.46975 * 299.99865 * 28 27 26 46 46 H 1.09001 * 109.47198 * 59.99536 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3011 0.1082 -0.0006 7 6 5.6764 0.1874 -0.0016 8 6 6.3057 1.4219 -0.0022 9 6 7.8110 1.4951 -0.0039 10 8 8.2852 1.5184 -1.3518 11 6 9.7078 1.5882 -1.4663 12 1 10.1884 1.0742 -0.6339 13 6 10.1790 0.9978 -2.8216 14 6 11.5150 1.7508 -3.0411 15 7 11.2697 3.1115 -2.5295 16 6 11.9471 4.2402 -2.9068 17 1 11.6912 5.1946 -2.4710 18 6 12.9626 4.1575 -3.8497 19 7 13.2740 2.9944 -4.3813 20 14 13.8871 5.6971 -4.3638 21 1 13.3491 6.8676 -3.6251 22 1 15.3300 5.5351 -4.0526 23 1 13.7167 5.9126 -5.8233 24 6 10.1779 3.0559 -1.5465 25 6 5.5623 2.5851 0.0040 26 6 4.1766 2.5247 -0.0006 27 8 3.4447 3.6668 0.0004 28 6 4.1668 4.9000 -0.0003 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8148 -0.8562 0.0005 33 1 6.2668 -0.7170 -0.0021 34 1 8.2177 0.6237 0.5092 35 1 8.1313 2.4016 0.5096 36 1 10.3445 -0.0767 -2.7434 37 1 9.4674 1.2252 -3.6153 38 1 11.7622 1.7833 -4.1022 39 1 12.3181 1.2735 -2.4797 40 1 13.9833 2.9368 -5.0404 41 1 9.3541 3.6917 -1.8709 42 1 10.5396 3.3830 -0.5717 43 1 6.0603 3.5434 0.0084 44 1 3.4636 5.7327 0.0011 45 1 4.7949 4.9538 0.8890 46 1 4.7928 4.9540 -0.8910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223287634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:19 Heat of formation + Delta-G solvation = -104.936212 kcal Electronic energy + Delta-G solvation = -28348.629513 eV Core-core repulsion = 24205.332653 eV Total energy + Delta-G solvation = -4143.296861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.00477 -39.83483 -38.63329 -37.64778 -36.49399 -35.86432 -32.76614 -31.93153 -30.48337 -29.28342 -28.34000 -27.84242 -27.09111 -26.25556 -24.33592 -22.86391 -22.49529 -21.08132 -20.27836 -20.15399 -18.47817 -17.61049 -17.17868 -17.01639 -16.63109 -16.51662 -16.18563 -15.86987 -15.12291 -14.95756 -14.83982 -14.68910 -14.09944 -13.92354 -13.62648 -13.54061 -13.42452 -12.92818 -12.70004 -12.45867 -12.40264 -12.09853 -11.85704 -11.77104 -11.54224 -11.43167 -11.24320 -11.07886 -11.00455 -10.96012 -10.80711 -10.55343 -10.31115 -10.10990 -9.81655 -9.59748 -9.29812 -9.19174 -8.68543 -8.53662 -6.87152 -5.68385 -3.10398 0.41350 1.13880 2.33777 2.46662 2.95218 3.37894 3.39029 3.43531 3.46118 3.98737 4.42859 4.46843 4.52627 4.64907 4.79723 4.84331 4.91718 4.92078 4.98341 4.98952 5.17397 5.23516 5.27985 5.29590 5.33945 5.40267 5.46851 5.51402 5.55656 5.70646 5.79039 5.83698 5.93422 6.15909 6.27132 6.30652 6.38603 6.48032 6.55491 6.59469 6.66841 7.04240 7.45645 7.53599 7.59875 7.61978 7.82185 8.32697 9.18642 9.79384 10.43402 11.35781 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002154 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.531078 B =12993.084596 C =13811.392321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.509 3.491 4 O -0.491 6.491 5 C -0.167 4.167 6 C -0.027 4.027 7 C -0.152 4.152 8 C -0.002 4.002 9 C 0.093 3.907 10 O -0.368 6.368 11 C 0.075 3.925 12 H 0.065 0.935 13 C -0.136 4.136 14 C 0.152 3.848 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.117 3.883 25 C -0.201 4.201 26 C 0.190 3.810 27 O -0.286 6.286 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.014 0.986 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.142 0.858 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.117 -7.129 11.770 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.354 3.646 4 O -0.378 6.378 5 C -0.169 4.169 6 C -0.045 4.045 7 C -0.170 4.170 8 C -0.003 4.003 9 C 0.016 3.984 10 O -0.287 6.287 11 C 0.017 3.983 12 H 0.083 0.917 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.010 4.010 25 C -0.220 4.220 26 C 0.142 3.858 27 O -0.197 6.197 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.159 0.841 44 H 0.122 0.878 45 H 0.077 0.923 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.528 -6.711 11.480 25.304 hybrid contribution 0.754 1.020 0.023 1.268 sum -20.774 -5.691 11.504 24.419 Atomic orbital electron populations 1.23239 0.76137 1.03584 1.02577 1.86533 1.23406 1.32873 1.84876 1.20886 0.88750 0.81498 0.73447 1.90881 1.66394 1.35652 1.44918 1.18392 0.89453 0.92003 1.17020 1.21275 0.93465 0.97132 0.92638 1.20979 0.94129 0.97662 1.04239 1.19769 0.95013 0.92660 0.92843 1.21398 0.89330 1.01418 0.86239 1.88018 1.22356 1.94848 1.23513 1.23307 0.78966 0.97003 0.99037 0.91694 1.23149 1.00349 0.98966 0.95048 1.21974 0.89640 0.82643 1.03063 1.44394 1.38142 1.04802 1.45581 1.19124 1.11379 0.86195 1.18293 0.90414 1.24807 0.99201 0.97242 0.99512 1.69786 1.33032 1.21986 1.32313 0.85978 0.79426 0.81801 0.78162 1.20532 1.21726 1.21676 1.21711 0.92039 0.94099 0.93137 1.21159 0.91652 1.00154 1.09026 1.18951 0.89682 0.85836 0.91322 1.86301 1.34432 1.12402 1.86598 1.23235 0.98375 0.84072 1.01938 0.91945 0.91895 0.88064 0.83700 0.84625 0.91952 0.92088 0.91887 0.91094 0.87139 0.96764 0.93698 0.94958 0.96221 0.84076 0.87819 0.92264 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.34 16 2 O -0.36 -3.73 9.82 -40.64 -0.40 -4.12 16 3 C 0.51 6.53 7.89 34.46 0.27 6.80 16 4 O -0.49 -7.50 14.95 -26.60 -0.40 -7.90 16 5 C -0.17 -2.04 5.89 -104.86 -0.62 -2.66 16 6 C -0.03 -0.27 9.61 -39.18 -0.38 -0.65 16 7 C -0.15 -1.55 9.67 -39.64 -0.38 -1.94 16 8 C 0.00 -0.03 5.51 -104.57 -0.58 -0.61 16 9 C 0.09 1.14 5.93 36.01 0.21 1.35 16 10 O -0.37 -5.97 10.05 -35.23 -0.35 -6.33 16 11 C 0.07 1.33 3.40 -24.89 -0.08 1.24 16 12 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 13 C -0.14 -2.64 6.81 -24.57 -0.17 -2.81 16 14 C 0.15 3.68 5.89 -2.53 -0.01 3.66 16 15 N -0.60 -15.58 3.39 -170.07 -0.58 -16.15 16 16 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 20 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.12 2.47 7.02 -3.06 -0.02 2.45 16 25 C -0.20 -2.36 8.67 -39.48 -0.34 -2.70 16 26 C 0.19 2.40 6.70 -38.67 -0.26 2.14 16 27 O -0.29 -3.69 8.57 -40.53 -0.35 -4.03 16 28 C 0.02 0.17 9.81 101.05 0.99 1.16 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 1.11 7.61 -52.48 -0.40 0.72 16 33 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 34 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.11 3.01 5.87 -51.93 -0.30 2.70 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 46 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -33.97 383.36 -8.16 -42.13 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.85 Total: -2.10 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.55 Total: 1.98 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.02 Total: -42.39 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.50 Total: -22.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.97 -8.16 -42.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223287634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.810 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds