Wall clock time and date at job start Tue Mar 31 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00200 * 2 1 4 4 O 1.21512 * 119.99608 * 359.97438 * 3 2 1 5 5 C 1.47400 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.39766 * 120.20062 * 359.97438 * 5 3 2 7 7 C 1.37762 * 119.90345 * 179.97438 * 6 5 3 8 8 C 1.38564 * 120.30656 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.79473 * 180.02562 * 8 7 6 10 10 O 1.42906 * 109.47162 * 89.99746 * 9 8 7 11 11 C 1.42893 * 113.99836 * 179.97438 * 10 9 8 12 12 H 1.08993 * 110.78196 * 31.79010 * 11 10 9 13 13 C 1.55165 * 110.71605 * 155.02613 * 11 10 9 14 14 C 1.54915 * 101.57980 * 153.86634 * 13 11 10 15 15 N 1.47425 * 104.83334 * 322.99105 * 14 13 11 16 16 C 1.36936 * 125.64929 * 204.09758 * 15 14 13 17 17 H 1.08003 * 119.99909 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99697 * 0.03486 * 16 15 14 19 19 N 1.31617 * 120.00113 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99553 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47564 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47227 * 120.00302 * 20 18 16 23 23 H 1.48508 * 109.47074 * 239.99933 * 20 18 16 24 24 C 1.47022 * 108.70334 * 24.12789 * 15 14 13 25 25 C 1.38049 * 120.40619 * 0.27188 * 8 7 6 26 26 C 1.38707 * 120.08478 * 359.45562 * 25 8 7 27 27 O 1.35648 * 120.15362 * 180.24714 * 26 25 8 28 28 C 1.42901 * 116.99856 * 0.29747 * 27 26 25 29 29 H 1.08995 * 109.47426 * 300.00055 * 1 2 3 30 30 H 1.08998 * 109.47118 * 60.00271 * 1 2 3 31 31 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.04420 * 359.95847 * 6 5 3 33 33 H 1.08003 * 119.84074 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47178 * 330.00325 * 9 8 7 35 35 H 1.08995 * 109.47311 * 209.99712 * 9 8 7 36 36 H 1.08995 * 111.00547 * 271.93966 * 13 11 10 37 37 H 1.09001 * 111.00003 * 35.79546 * 13 11 10 38 38 H 1.08997 * 110.36462 * 204.15099 * 14 13 11 39 39 H 1.08999 * 110.46102 * 81.87572 * 14 13 11 40 40 H 0.97003 * 119.99386 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.88723 * 239.52626 * 24 15 14 42 42 H 1.08998 * 109.88661 * 118.35607 * 24 15 14 43 43 H 1.07998 * 119.95652 * 179.70336 * 25 8 7 44 44 H 1.08995 * 109.46800 * 180.02562 * 28 27 26 45 45 H 1.09004 * 109.46975 * 299.99865 * 28 27 26 46 46 H 1.09001 * 109.47198 * 59.99536 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3011 0.1082 -0.0006 7 6 5.6764 0.1874 -0.0016 8 6 6.3057 1.4219 -0.0022 9 6 7.8110 1.4951 -0.0039 10 8 8.2852 1.5184 -1.3518 11 6 9.7078 1.5882 -1.4663 12 1 10.1884 1.0742 -0.6339 13 6 10.1790 0.9978 -2.8216 14 6 11.5150 1.7508 -3.0411 15 7 11.2697 3.1115 -2.5295 16 6 11.9471 4.2402 -2.9068 17 1 11.6912 5.1946 -2.4710 18 6 12.9626 4.1575 -3.8497 19 7 13.2740 2.9944 -4.3813 20 14 13.8871 5.6971 -4.3638 21 1 13.3491 6.8676 -3.6251 22 1 15.3300 5.5351 -4.0526 23 1 13.7167 5.9126 -5.8233 24 6 10.1779 3.0559 -1.5465 25 6 5.5623 2.5851 0.0040 26 6 4.1766 2.5247 -0.0006 27 8 3.4447 3.6668 0.0004 28 6 4.1668 4.9000 -0.0003 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.8148 -0.8562 0.0005 33 1 6.2668 -0.7170 -0.0021 34 1 8.2177 0.6237 0.5092 35 1 8.1313 2.4016 0.5096 36 1 10.3445 -0.0767 -2.7434 37 1 9.4674 1.2252 -3.6153 38 1 11.7622 1.7833 -4.1022 39 1 12.3181 1.2735 -2.4797 40 1 13.9833 2.9368 -5.0404 41 1 9.3541 3.6917 -1.8709 42 1 10.5396 3.3830 -0.5717 43 1 6.0603 3.5434 0.0084 44 1 3.4636 5.7327 0.0011 45 1 4.7949 4.9538 0.8890 46 1 4.7928 4.9540 -0.8910 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223287634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:17 Heat of formation + Delta-G solvation = -124.843047 kcal Electronic energy + Delta-G solvation = -28349.492738 eV Core-core repulsion = 24205.332653 eV Total energy + Delta-G solvation = -4144.160086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.87604 -40.71389 -39.93109 -38.69686 -37.42271 -37.31794 -34.32903 -33.26780 -31.30741 -31.08367 -29.23739 -28.81793 -28.41219 -27.21453 -26.20453 -23.77528 -23.30420 -22.11249 -21.89539 -21.74820 -19.34873 -18.99091 -18.47792 -18.07326 -17.83036 -17.43575 -17.05524 -16.75781 -16.67390 -16.33499 -16.00115 -15.65117 -15.41734 -15.28836 -14.62150 -14.47874 -14.39849 -14.24929 -14.04466 -13.64273 -13.49711 -13.24137 -13.11589 -12.95740 -12.87927 -12.70136 -12.62437 -12.41353 -12.25029 -12.07784 -11.98451 -11.96159 -11.78508 -11.75491 -11.45669 -11.31536 -10.76941 -10.51042 -10.15529 -9.38046 -8.90889 -7.78958 -5.23758 -0.47396 0.31764 1.41076 1.46665 1.47734 1.57951 1.68152 2.17949 2.42376 2.50854 2.94912 3.31700 3.54535 3.68694 3.74082 3.80902 3.89162 3.93824 4.12846 4.19728 4.21948 4.24306 4.30782 4.32673 4.34587 4.40485 4.50924 4.53213 4.66821 4.67210 4.71266 4.75998 4.80488 4.99014 5.03012 5.03273 5.07561 5.13495 5.31285 5.44074 5.45051 5.61402 5.62539 5.78844 6.22086 6.26213 6.33060 6.71913 7.09314 7.75956 8.38982 9.23194 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.002154 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.531078 B =12993.084596 C =13811.392321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.525 6.525 5 C -0.186 4.186 6 C -0.018 4.018 7 C -0.148 4.148 8 C -0.013 4.013 9 C 0.088 3.912 10 O -0.380 6.380 11 C 0.094 3.906 12 H 0.092 0.908 13 C -0.124 4.124 14 C 0.153 3.847 15 N -0.626 5.626 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.111 3.889 25 C -0.207 4.207 26 C 0.173 3.827 27 O -0.310 6.310 28 C 0.013 3.987 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.137 0.863 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.075 0.925 39 H -0.001 1.001 40 H 0.248 0.752 41 H 0.024 0.976 42 H 0.030 0.970 43 H 0.147 0.853 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.720 -8.302 12.966 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.274 6.274 3 C 0.355 3.645 4 O -0.416 6.416 5 C -0.188 4.188 6 C -0.035 4.035 7 C -0.166 4.166 8 C -0.013 4.013 9 C 0.012 3.988 10 O -0.300 6.300 11 C 0.036 3.964 12 H 0.110 0.890 13 C -0.163 4.163 14 C 0.028 3.972 15 N -0.353 5.353 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.810 3.190 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.014 4.014 25 C -0.226 4.226 26 C 0.126 3.874 27 O -0.222 6.222 28 C -0.081 4.081 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.017 0.983 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.165 0.835 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.160 -7.900 12.704 26.737 hybrid contribution 0.835 1.362 -0.305 1.627 sum -21.325 -6.538 12.398 25.519 Atomic orbital electron populations 1.23561 0.74398 1.05889 1.02402 1.86521 1.25109 1.31484 1.84257 1.21092 0.89101 0.81664 0.72607 1.90856 1.67151 1.36839 1.46750 1.18673 0.89516 0.92810 1.17771 1.21546 0.93446 0.97360 0.91197 1.21280 0.94313 0.98028 1.02944 1.19864 0.94780 0.93199 0.93463 1.21638 0.89606 1.03063 0.84479 1.87989 1.20950 1.94771 1.26245 1.23001 0.80247 0.94325 0.98805 0.89019 1.22952 0.97175 1.00217 0.95927 1.21757 0.92005 0.82889 1.00565 1.44710 1.39015 1.04778 1.46828 1.19478 1.11714 0.87246 1.18364 0.90242 1.25658 1.00351 1.00199 0.99836 1.70034 1.33327 1.23753 1.32686 0.84964 0.77834 0.78784 0.77448 1.19183 1.21704 1.21822 1.21902 0.90479 0.96808 0.92243 1.21264 0.91421 1.00771 1.09143 1.19179 0.90124 0.86101 0.92025 1.86271 1.35755 1.13418 1.86782 1.23441 0.98910 0.83258 1.02537 0.92008 0.92288 0.84488 0.81235 0.82088 0.89193 0.91506 0.88695 0.92140 0.90676 0.98339 0.94195 0.95822 0.95239 0.83549 0.86358 0.90931 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.59 16 2 O -0.36 -6.92 9.82 -56.63 -0.56 -7.47 16 3 C 0.51 12.87 7.89 70.23 0.55 13.43 16 4 O -0.53 -16.36 14.95 26.80 0.40 -15.96 16 5 C -0.19 -4.39 5.89 -20.02 -0.12 -4.51 16 6 C -0.02 -0.31 9.61 22.53 0.22 -0.10 16 7 C -0.15 -2.56 9.67 22.23 0.21 -2.35 16 8 C -0.01 -0.27 5.51 -19.83 -0.11 -0.38 16 9 C 0.09 1.87 5.93 71.24 0.42 2.30 16 10 O -0.38 -11.28 10.05 -148.98 -1.50 -12.77 16 11 C 0.09 3.12 3.40 31.79 0.11 3.22 16 12 H 0.09 2.58 7.89 -2.39 -0.02 2.56 16 13 C -0.12 -4.62 6.81 31.99 0.22 -4.41 16 14 C 0.15 7.48 5.89 86.86 0.51 7.99 16 15 N -0.63 -32.55 3.39 -691.98 -2.35 -34.90 16 16 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 17 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 19 N -0.95 -56.35 10.09 21.65 0.22 -56.14 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.11 4.60 7.02 86.73 0.61 5.20 16 25 C -0.21 -4.66 8.67 22.34 0.19 -4.46 16 26 C 0.17 4.34 6.70 22.86 0.15 4.49 16 27 O -0.31 -8.11 8.57 -68.70 -0.59 -8.70 16 28 C 0.01 0.22 9.81 113.37 1.11 1.34 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.17 2.06 7.61 -2.91 -0.02 2.04 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.09 1.45 8.05 -2.39 -0.02 1.44 16 35 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 4.22 5.87 -2.39 -0.01 4.21 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 41 H 0.02 1.01 8.06 -2.39 -0.02 0.99 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.15 2.97 6.30 -2.91 -0.02 2.96 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.05 7.65 -2.38 -0.02 1.03 16 46 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 Total: -1.00 -75.13 383.36 5.25 -69.88 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.98 Total: 11.08 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.61 Total: 7.32 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.13 Total: -91.04 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -2.24 Total: -44.90 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.13 5.25 -69.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223287634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.966 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds