Wall clock time and date at job start Tue Mar 31 2020 18:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34751 * 116.99693 * 2 1 4 4 O 1.21509 * 120.00405 * 0.02562 * 3 2 1 5 5 C 1.47395 * 119.99583 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.20012 * 0.02562 * 5 3 2 7 7 C 1.37767 * 119.90396 * 179.71782 * 6 5 3 8 8 C 1.38563 * 120.30741 * 0.52041 * 7 6 5 9 9 C 1.50701 * 119.79767 * 179.76029 * 8 7 6 10 10 O 1.42901 * 109.46800 * 269.71968 * 9 8 7 11 11 C 1.42904 * 113.99749 * 179.97438 * 10 9 8 12 12 C 1.53514 * 114.17059 * 210.00163 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.13896 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.38054 * 120.40339 * 359.47495 * 8 7 6 25 25 C 1.38707 * 120.09039 * 0.26630 * 24 8 7 26 26 O 1.35635 * 120.15778 * 179.97438 * 25 24 8 27 27 C 1.42895 * 116.99727 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46961 * 300.00253 * 1 2 3 30 30 H 1.09003 * 109.47148 * 59.99884 * 1 2 3 31 31 H 1.07998 * 120.04618 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.84493 * 180.27495 * 7 6 5 33 33 H 1.08997 * 109.47120 * 149.71975 * 9 8 7 34 34 H 1.08998 * 109.47232 * 29.71835 * 9 8 7 35 35 H 1.09002 * 113.25611 * 342.95779 * 11 10 9 36 36 H 1.09000 * 113.47331 * 105.37574 * 12 11 10 37 37 H 1.08995 * 113.52785 * 334.91164 * 12 11 10 38 38 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 39 39 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 42 42 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 43 43 H 1.07998 * 119.95767 * 180.23234 * 24 8 7 44 44 H 1.09002 * 109.47319 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47176 * 299.99486 * 27 26 25 46 46 H 1.09002 * 109.47577 * 59.99673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1082 0.0006 7 6 5.6764 0.1874 -0.0048 8 6 6.3058 1.4218 0.0007 9 6 7.8110 1.4950 0.0002 10 8 8.2871 1.5184 1.3474 11 6 9.7101 1.5870 1.4598 12 6 10.2744 0.9135 2.7186 13 7 11.2217 2.0383 2.8307 14 6 11.3662 2.4675 4.2282 15 6 12.5113 3.4408 4.3389 16 1 13.0757 3.7130 3.4593 17 6 12.8393 3.9830 5.5635 18 7 12.1523 3.6512 6.6348 19 14 14.2592 5.1890 5.7008 20 1 14.4052 5.6230 7.1135 21 1 15.5126 4.5309 5.2526 22 1 13.9881 6.3722 4.8455 23 6 10.2313 2.8701 2.1220 24 6 5.5623 2.5851 0.0007 25 6 4.1766 2.5248 0.0007 26 8 3.4448 3.6668 0.0012 27 6 4.1669 4.8999 0.0022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8148 -0.8562 -0.0003 32 1 6.2668 -0.7169 -0.0093 33 1 8.1305 2.4015 -0.5138 34 1 8.2170 0.6237 -0.5135 35 1 10.2280 1.3179 0.5392 36 1 10.7576 -0.0431 2.5196 37 1 9.5615 0.8625 3.5415 38 1 11.5653 1.5991 4.8563 39 1 10.4458 2.9502 4.5570 40 1 12.3833 4.0324 7.4963 41 1 9.5063 3.3418 2.7854 42 1 10.6781 3.5717 1.4176 43 1 6.0604 3.5434 0.0012 44 1 3.4637 5.7328 0.0030 45 1 4.7936 4.9533 0.8925 46 1 4.7943 4.9544 -0.8875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223289156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:57 Heat of formation + Delta-G solvation = -93.481925 kcal Electronic energy + Delta-G solvation = -27882.121396 eV Core-core repulsion = 23739.321230 eV Total energy + Delta-G solvation = -4142.800166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06230 -39.91796 -39.56407 -38.06822 -36.58223 -36.41872 -32.96198 -32.46347 -30.55223 -29.27337 -28.33134 -27.82290 -26.48370 -25.43742 -24.91511 -22.96237 -22.56386 -21.59611 -21.13614 -19.50784 -18.52372 -17.65619 -17.23070 -17.00231 -16.62792 -16.34552 -16.17908 -15.92340 -15.52141 -15.16014 -14.96785 -14.62699 -14.40540 -14.03717 -13.83589 -13.66481 -13.46965 -13.24146 -12.78178 -12.66047 -12.43632 -12.19590 -12.08412 -11.95948 -11.86681 -11.44870 -11.40927 -11.20272 -11.14280 -11.03620 -10.85444 -10.60759 -10.56436 -10.22168 -9.79268 -9.37302 -9.26139 -9.21922 -8.60263 -8.44888 -7.95923 -6.04661 -4.06314 0.34392 1.07113 2.28096 2.42741 2.89259 3.30403 3.32602 3.36328 3.39549 3.84478 4.33952 4.41370 4.44060 4.57285 4.69135 4.78000 4.81678 4.88389 4.89305 4.90694 4.92452 4.95192 5.09591 5.17391 5.20652 5.25999 5.28196 5.30335 5.33949 5.47510 5.73964 5.82691 5.86774 6.04650 6.11730 6.13933 6.18446 6.26233 6.31593 6.35389 6.55883 6.98179 7.16611 7.31482 7.57863 7.62518 7.82893 8.07724 8.42476 9.00511 9.57566 11.06360 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.001961 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.171933 B =14276.796278 C =14747.664415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.509 3.491 4 O -0.490 6.490 5 C -0.165 4.165 6 C -0.026 4.026 7 C -0.151 4.151 8 C -0.006 4.006 9 C 0.094 3.906 10 O -0.366 6.366 11 C 0.051 3.949 12 C -0.002 4.002 13 N -0.464 5.464 14 C 0.162 3.838 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.005 4.005 24 C -0.201 4.201 25 C 0.190 3.810 26 O -0.286 6.286 27 C 0.019 3.981 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.141 0.859 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.516 -6.806 -17.909 28.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.354 3.646 4 O -0.378 6.378 5 C -0.167 4.167 6 C -0.045 4.045 7 C -0.170 4.170 8 C -0.006 4.006 9 C 0.018 3.982 10 O -0.284 6.284 11 C -0.007 4.007 12 C -0.132 4.132 13 N -0.188 5.188 14 C 0.036 3.964 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.539 5.539 19 Si 0.729 3.271 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.203 1.203 23 C -0.134 4.134 24 C -0.220 4.220 25 C 0.142 3.858 26 O -0.197 6.197 27 C -0.076 4.076 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.159 0.841 44 H 0.122 0.878 45 H 0.081 0.919 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.403 -6.478 -17.755 27.811 hybrid contribution 0.189 1.032 0.551 1.185 sum -20.214 -5.446 -17.204 27.096 Atomic orbital electron populations 1.23250 0.76067 1.03624 1.02602 1.86533 1.23462 1.32827 1.84851 1.20875 0.88740 0.81531 0.73485 1.90884 1.66392 1.35647 1.44849 1.18413 0.89520 0.92000 1.16785 1.21290 0.93473 0.97179 0.92508 1.20981 0.94161 0.97640 1.04183 1.19747 0.94921 0.92710 0.93261 1.21424 0.89468 1.01481 0.85876 1.88049 1.21883 1.94473 1.24032 1.24083 0.79433 0.98581 0.98636 1.24051 0.95008 0.97952 0.96154 1.68967 1.29192 1.02812 1.17862 1.20258 0.97046 0.96259 0.82855 1.21052 1.14783 1.24664 0.94020 0.91899 1.25020 0.96998 0.97045 0.95702 1.69950 1.40418 1.44318 0.99186 0.86515 0.82567 0.81210 0.76843 1.21325 1.20130 1.20269 1.24245 0.94604 0.96056 0.98505 1.21144 0.91683 1.00088 1.09097 1.18953 0.89689 0.85863 0.91292 1.86306 1.34420 1.12395 1.86559 1.23236 0.98407 0.84105 1.01864 0.88030 0.91855 0.91935 0.83645 0.84587 0.91997 0.91729 0.88626 0.90262 0.91218 0.95214 0.97705 0.92811 0.91072 0.90583 0.84096 0.87777 0.91932 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.60 9.82 -40.63 -0.40 -4.00 16 3 C 0.51 6.30 7.89 34.46 0.27 6.57 16 4 O -0.49 -7.29 14.95 -26.60 -0.40 -7.69 16 5 C -0.17 -1.92 5.89 -104.86 -0.62 -2.54 16 6 C -0.03 -0.25 9.61 -39.18 -0.38 -0.62 16 7 C -0.15 -1.41 9.67 -39.63 -0.38 -1.80 16 8 C -0.01 -0.06 5.51 -104.57 -0.58 -0.64 16 9 C 0.09 0.98 5.89 36.01 0.21 1.19 16 10 O -0.37 -5.22 10.38 -35.23 -0.37 -5.59 16 11 C 0.05 0.76 4.65 -26.20 -0.12 0.64 16 12 C 0.00 -0.04 7.52 -7.53 -0.06 -0.10 16 13 N -0.46 -10.09 6.32 -246.08 -1.55 -11.65 16 14 C 0.16 4.27 4.57 -4.98 -0.02 4.25 16 15 C -0.51 -14.51 9.39 -34.44 -0.32 -14.84 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.00 -0.09 7.56 -7.54 -0.06 -0.14 16 24 C -0.20 -2.15 8.67 -39.48 -0.34 -2.49 16 25 C 0.19 2.26 6.70 -38.67 -0.26 2.00 16 26 O -0.29 -3.50 8.57 -40.49 -0.35 -3.84 16 27 C 0.02 0.15 9.81 101.05 0.99 1.14 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.04 7.61 -52.49 -0.40 0.64 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.10 1.23 7.88 -51.93 -0.41 0.82 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 38 H 0.03 0.84 8.08 -51.92 -0.42 0.42 16 39 H 0.01 0.14 7.30 -51.93 -0.38 -0.24 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 1.42 7.42 -51.93 -0.39 1.03 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 46 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -34.75 390.54 -9.03 -43.77 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.87 Total: -2.86 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.69 Total: -4.59 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.82 Total: -37.87 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.51 Total: -21.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.75 -9.03 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223289156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.710 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds