Wall clock time and date at job start Tue Mar 31 2020 18:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34751 * 116.99693 * 2 1 4 4 O 1.21509 * 120.00405 * 0.02562 * 3 2 1 5 5 C 1.47395 * 119.99583 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.20012 * 0.02562 * 5 3 2 7 7 C 1.37767 * 119.90396 * 179.71782 * 6 5 3 8 8 C 1.38563 * 120.30741 * 0.52041 * 7 6 5 9 9 C 1.50701 * 119.79767 * 179.76029 * 8 7 6 10 10 O 1.42901 * 109.46800 * 269.71968 * 9 8 7 11 11 C 1.42904 * 113.99749 * 179.97438 * 10 9 8 12 12 C 1.53514 * 114.17059 * 210.00163 * 11 10 9 13 13 N 1.47483 * 87.92777 * 220.13896 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.38054 * 120.40339 * 359.47495 * 8 7 6 25 25 C 1.38707 * 120.09039 * 0.26630 * 24 8 7 26 26 O 1.35635 * 120.15778 * 179.97438 * 25 24 8 27 27 C 1.42895 * 116.99727 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46961 * 300.00253 * 1 2 3 30 30 H 1.09003 * 109.47148 * 59.99884 * 1 2 3 31 31 H 1.07998 * 120.04618 * 0.02562 * 6 5 3 32 32 H 1.07997 * 119.84493 * 180.27495 * 7 6 5 33 33 H 1.08997 * 109.47120 * 149.71975 * 9 8 7 34 34 H 1.08998 * 109.47232 * 29.71835 * 9 8 7 35 35 H 1.09002 * 113.25611 * 342.95779 * 11 10 9 36 36 H 1.09000 * 113.47331 * 105.37574 * 12 11 10 37 37 H 1.08995 * 113.52785 * 334.91164 * 12 11 10 38 38 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 39 39 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 41 41 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 42 42 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 43 43 H 1.07998 * 119.95767 * 180.23234 * 24 8 7 44 44 H 1.09002 * 109.47319 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47176 * 299.99486 * 27 26 25 46 46 H 1.09002 * 109.47577 * 59.99673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1082 0.0006 7 6 5.6764 0.1874 -0.0048 8 6 6.3058 1.4218 0.0007 9 6 7.8110 1.4950 0.0002 10 8 8.2871 1.5184 1.3474 11 6 9.7101 1.5870 1.4598 12 6 10.2744 0.9135 2.7186 13 7 11.2217 2.0383 2.8307 14 6 11.3662 2.4675 4.2282 15 6 12.5113 3.4408 4.3389 16 1 13.0757 3.7130 3.4593 17 6 12.8393 3.9830 5.5635 18 7 12.1523 3.6512 6.6348 19 14 14.2592 5.1890 5.7008 20 1 14.4052 5.6230 7.1135 21 1 15.5126 4.5309 5.2526 22 1 13.9881 6.3722 4.8455 23 6 10.2313 2.8701 2.1220 24 6 5.5623 2.5851 0.0007 25 6 4.1766 2.5248 0.0007 26 8 3.4448 3.6668 0.0012 27 6 4.1669 4.8999 0.0022 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.8148 -0.8562 -0.0003 32 1 6.2668 -0.7169 -0.0093 33 1 8.1305 2.4015 -0.5138 34 1 8.2170 0.6237 -0.5135 35 1 10.2280 1.3179 0.5392 36 1 10.7576 -0.0431 2.5196 37 1 9.5615 0.8625 3.5415 38 1 11.5653 1.5991 4.8563 39 1 10.4458 2.9502 4.5570 40 1 12.3833 4.0324 7.4963 41 1 9.5063 3.3418 2.7854 42 1 10.6781 3.5717 1.4176 43 1 6.0604 3.5434 0.0012 44 1 3.4637 5.7328 0.0030 45 1 4.7936 4.9533 0.8925 46 1 4.7943 4.9544 -0.8875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223289156.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:56 Heat of formation + Delta-G solvation = -117.258366 kcal Electronic energy + Delta-G solvation = -27883.152420 eV Core-core repulsion = 23739.321230 eV Total energy + Delta-G solvation = -4143.831190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.88622 -41.06638 -40.65507 -38.94573 -37.59523 -37.38703 -35.02302 -33.40896 -31.31605 -31.05601 -29.07479 -28.58368 -27.40506 -26.96443 -26.56403 -23.83206 -23.39626 -23.31024 -21.94915 -20.93753 -19.34582 -18.66442 -18.50456 -18.03507 -17.92807 -17.44753 -17.14146 -16.86151 -16.68667 -16.33851 -16.19954 -15.81429 -15.58486 -15.12768 -14.98793 -14.53259 -14.42794 -14.37589 -14.08599 -13.86564 -13.63071 -13.49178 -13.17255 -13.05071 -12.93449 -12.67225 -12.64793 -12.49121 -12.26055 -12.20260 -12.06118 -11.97418 -11.79822 -11.61965 -11.46958 -11.22069 -10.62950 -10.41037 -10.16808 -9.73822 -9.38386 -8.24049 -6.35205 -0.48213 0.31242 1.39574 1.40156 1.43542 1.51760 1.67410 2.17818 2.37180 2.43785 2.90398 3.08033 3.41944 3.45584 3.57302 3.68972 3.82255 3.93903 4.07270 4.19092 4.23032 4.31020 4.31363 4.33264 4.39015 4.40902 4.51159 4.52982 4.54886 4.67124 4.68378 4.70145 4.74813 4.76682 4.88979 4.95083 5.00382 5.06399 5.13029 5.30344 5.42864 5.55174 5.61125 5.74460 6.04787 6.22280 6.26077 6.39836 6.70700 6.78928 7.34438 8.87136 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.001961 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.171933 B =14276.796278 C =14747.664415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.508 3.492 4 O -0.526 6.526 5 C -0.187 4.187 6 C -0.020 4.020 7 C -0.149 4.149 8 C -0.015 4.015 9 C 0.089 3.911 10 O -0.383 6.383 11 C 0.088 3.912 12 C -0.009 4.009 13 N -0.479 5.479 14 C 0.177 3.823 15 C -0.528 4.528 16 H 0.062 0.938 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.282 1.282 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.013 4.013 24 C -0.207 4.207 25 C 0.172 3.828 26 O -0.312 6.312 27 C 0.012 3.988 28 H 0.137 0.863 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.001 0.999 39 H -0.024 1.024 40 H 0.266 0.734 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.151 0.849 44 H 0.117 0.883 45 H 0.062 0.938 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.661 -7.609 -19.793 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.354 3.646 4 O -0.416 6.416 5 C -0.189 4.189 6 C -0.038 4.038 7 C -0.167 4.167 8 C -0.016 4.016 9 C 0.013 3.987 10 O -0.302 6.302 11 C 0.030 3.970 12 C -0.138 4.138 13 N -0.203 5.203 14 C 0.050 3.950 15 C -0.566 4.566 16 H 0.081 0.919 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.207 1.207 21 H -0.191 1.191 22 H -0.191 1.191 23 C -0.143 4.143 24 C -0.225 4.225 25 C 0.125 3.875 26 O -0.224 6.224 27 C -0.082 4.082 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.186 0.814 32 H 0.179 0.821 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.019 0.981 39 H -0.007 1.007 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.168 0.832 44 H 0.135 0.865 45 H 0.081 0.919 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.559 -7.306 -19.665 28.682 hybrid contribution -0.203 1.218 1.102 1.655 sum -19.763 -6.088 -18.563 27.789 Atomic orbital electron populations 1.23563 0.74403 1.05885 1.02401 1.86523 1.25113 1.31532 1.84261 1.21125 0.89179 0.81650 0.72612 1.90855 1.67178 1.36825 1.46755 1.18687 0.89464 0.92918 1.17812 1.21547 0.93603 0.97306 0.91302 1.21297 0.94237 0.98190 1.02937 1.19918 0.95168 0.93036 0.93442 1.21698 0.89226 1.03641 0.84115 1.88024 1.20997 1.94305 1.26883 1.23726 0.80409 0.94475 0.98427 1.24126 0.94353 0.97915 0.97438 1.68845 1.31662 1.05203 1.14614 1.19899 0.95143 0.94473 0.85467 1.21404 1.15497 1.25403 0.94304 0.91931 1.26006 0.99863 0.98907 0.95194 1.70085 1.42141 1.45525 0.99790 0.85362 0.78927 0.78750 0.77140 1.20734 1.19100 1.19143 1.24304 0.93791 0.97828 0.98353 1.21296 0.91295 1.00913 1.09017 1.19202 0.90287 0.86026 0.92027 1.86271 1.35855 1.13472 1.86767 1.23448 0.98924 0.83185 1.02621 0.84503 0.92325 0.91968 0.81449 0.82095 0.90539 0.88822 0.84998 0.88103 0.92974 0.98090 1.00665 0.92576 0.93356 0.89369 0.83181 0.86506 0.91928 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.59 16 2 O -0.36 -6.89 9.82 -56.62 -0.56 -7.45 16 3 C 0.51 12.71 7.89 70.23 0.55 13.26 16 4 O -0.53 -16.22 14.95 26.81 0.40 -15.82 16 5 C -0.19 -4.30 5.89 -20.02 -0.12 -4.42 16 6 C -0.02 -0.33 9.61 22.53 0.22 -0.12 16 7 C -0.15 -2.38 9.67 22.24 0.21 -2.16 16 8 C -0.02 -0.29 5.51 -19.83 -0.11 -0.39 16 9 C 0.09 1.54 5.89 71.24 0.42 1.96 16 10 O -0.38 -9.98 10.38 -148.98 -1.55 -11.53 16 11 C 0.09 2.42 4.65 30.94 0.14 2.57 16 12 C -0.01 -0.32 7.52 83.58 0.63 0.31 16 13 N -0.48 -20.87 6.32 -932.86 -5.89 -26.77 16 14 C 0.18 9.71 4.57 85.55 0.39 10.10 16 15 C -0.53 -30.74 9.39 25.60 0.24 -30.50 16 16 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 17 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 18 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 19 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C -0.01 -0.49 7.56 83.58 0.63 0.15 16 24 C -0.21 -4.22 8.67 22.34 0.19 -4.02 16 25 C 0.17 4.11 6.70 22.86 0.15 4.26 16 26 O -0.31 -7.86 8.57 -68.57 -0.59 -8.44 16 27 C 0.01 0.20 9.81 113.37 1.11 1.31 16 28 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.17 1.99 7.61 -2.91 -0.02 1.97 16 32 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.09 1.12 8.08 -2.39 -0.02 1.11 16 35 H 0.13 2.76 7.88 -2.39 -0.02 2.74 16 36 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 37 H 0.05 1.99 7.91 -2.39 -0.02 1.97 16 38 H 0.00 0.06 8.08 -2.38 -0.02 0.04 16 39 H -0.02 -1.45 7.30 -2.39 -0.02 -1.46 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 42 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.15 2.62 6.30 -2.91 -0.02 2.60 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 46 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 Total: -1.00 -77.89 390.54 1.44 -76.45 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.98 Total: 9.59 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.33 Total: -5.74 kcal Atomic # 7 Polarization: -78.13 SS G_CDS: -5.61 Total: -83.73 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -2.29 Total: -43.25 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.89 1.44 -76.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223289156.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.808 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds