Wall clock time and date at job start Tue Mar 31 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 116.99930 * 2 1 4 4 O 1.21463 * 120.00240 * 359.97438 * 3 2 1 5 5 C 1.47737 * 119.99775 * 179.97438 * 3 2 1 6 6 C 1.39660 * 120.12774 * 5.98297 * 5 3 2 7 7 C 1.37946 * 119.96087 * 180.27388 * 6 5 3 8 8 C 1.38290 * 120.21649 * 359.76737 * 7 6 5 9 9 C 1.38823 * 120.24858 * 359.95379 * 8 7 6 10 10 O 1.35905 * 119.98432 * 180.02562 * 9 8 7 11 11 C 1.42903 * 116.99984 * 359.97438 * 10 9 8 12 12 C 1.38485 * 120.03418 * 0.02578 * 9 8 7 13 13 C 1.50695 * 120.10640 * 180.02562 * 12 9 8 14 14 O 1.42894 * 109.47209 * 97.86015 * 13 12 9 15 15 C 1.42901 * 113.99991 * 180.02562 * 14 13 12 16 16 C 1.53516 * 114.17130 * 210.00197 * 15 14 13 17 17 N 1.47479 * 87.93271 * 220.32848 * 16 15 14 18 18 C 1.46896 * 111.00192 * 138.70211 * 17 16 15 19 19 C 1.50701 * 109.47455 * 170.00163 * 18 17 16 20 20 H 1.08003 * 120.00096 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00407 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00283 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99843 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47430 * 270.00027 * 23 21 19 25 25 H 1.48504 * 109.47269 * 30.00163 * 23 21 19 26 26 H 1.48501 * 109.47375 * 149.99790 * 23 21 19 27 27 C 1.47481 * 87.83483 * 27.00927 * 17 16 15 28 28 H 1.09001 * 109.46563 * 59.99965 * 1 2 3 29 29 H 1.09000 * 109.47094 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46797 * 300.00139 * 1 2 3 31 31 H 1.07997 * 120.01778 * 0.02562 * 6 5 3 32 32 H 1.08006 * 119.89390 * 179.74364 * 7 6 5 33 33 H 1.07998 * 119.88211 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47201 * 300.00340 * 11 10 9 35 35 H 1.08996 * 109.46825 * 60.00663 * 11 10 9 36 36 H 1.09003 * 109.47016 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46978 * 337.85785 * 13 12 9 38 38 H 1.08995 * 109.47219 * 217.86343 * 13 12 9 39 39 H 1.09003 * 113.38650 * 343.07986 * 15 14 13 40 40 H 1.09002 * 113.47658 * 105.56081 * 16 15 14 41 41 H 1.08994 * 113.47784 * 335.09368 * 16 15 14 42 42 H 1.09003 * 109.47450 * 50.00361 * 18 17 16 43 43 H 1.09001 * 109.47287 * 289.99761 * 18 17 16 44 44 H 0.97006 * 120.00314 * 180.02562 * 22 21 19 45 45 H 1.08997 * 113.47603 * 87.76073 * 27 17 16 46 46 H 1.09002 * 113.47709 * 218.22248 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3019 0.1145 -0.1248 7 6 5.6793 0.1900 -0.1182 8 6 6.3085 1.4151 0.0075 9 6 5.5588 2.5773 0.1269 10 8 6.1827 3.7785 0.2495 11 6 7.6117 3.7703 0.2486 12 6 4.1754 2.5135 0.1210 13 6 3.3600 3.7743 0.2499 14 8 2.9467 4.2089 -1.0471 15 6 2.1633 5.4040 -1.0373 16 6 1.1473 5.4990 -2.1841 17 7 1.4948 6.9274 -2.3025 18 6 1.5960 7.3295 -3.7117 19 6 1.7071 8.8299 -3.7993 20 1 1.7025 9.4253 -2.8982 21 6 1.8135 9.4427 -5.0297 22 7 1.9099 10.7521 -5.1061 23 14 1.8207 8.4132 -6.5884 24 1 3.2174 8.0417 -6.9299 25 1 1.0199 7.1815 -6.3718 26 1 1.2306 9.1976 -7.7026 27 6 2.8213 6.5927 -1.7518 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.8138 -0.8439 -0.2228 32 1 6.2682 -0.7105 -0.2110 33 1 7.3872 1.4679 0.0125 34 1 7.9722 3.1665 1.0814 35 1 7.9720 3.3476 -0.6893 36 1 7.9810 4.7905 0.3532 37 1 3.9641 4.5514 0.7182 38 1 2.4815 3.5775 0.8642 39 1 1.7530 5.6444 -0.0565 40 1 0.1183 5.3272 -1.8680 41 1 1.4238 4.9109 -3.0592 42 1 0.7068 6.9992 -4.2487 43 1 2.4800 6.8733 -4.1572 44 1 1.9844 11.1833 -5.9719 45 1 3.5447 6.2966 -2.5114 46 1 3.2112 7.3479 -1.0693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223405643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:20 Heat of formation + Delta-G solvation = -80.037131 kcal Electronic energy + Delta-G solvation = -29129.902707 eV Core-core repulsion = 24987.685551 eV Total energy + Delta-G solvation = -4142.217156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12015 -40.06841 -39.42906 -37.75594 -36.76861 -36.18001 -32.77302 -32.20934 -31.10214 -29.54747 -28.01318 -27.71803 -26.39309 -25.32416 -24.85326 -23.82825 -22.01827 -21.09533 -21.06640 -19.36938 -18.77790 -17.44274 -16.89665 -16.70076 -16.55035 -16.50892 -16.44734 -16.11075 -15.94870 -15.09792 -14.87617 -14.28890 -14.27568 -13.97264 -13.85482 -13.68799 -13.21151 -13.10327 -12.78883 -12.77466 -12.40977 -12.31867 -12.15142 -12.06699 -11.85505 -11.46008 -11.42975 -11.39297 -10.99718 -10.92706 -10.79896 -10.57086 -10.18477 -9.87200 -9.66637 -9.39834 -9.26719 -8.89256 -8.57501 -8.51896 -7.93329 -5.99417 -3.96068 0.31572 0.97461 2.31008 2.32233 3.03744 3.30884 3.32316 3.39300 3.42727 4.02884 4.32953 4.39951 4.47177 4.60248 4.69524 4.76372 4.85326 4.88382 4.95819 4.97392 4.97872 5.05174 5.06009 5.21424 5.29786 5.31883 5.33646 5.47375 5.54048 5.70058 5.81087 5.92664 5.95754 6.01737 6.09272 6.12610 6.24662 6.30566 6.37504 6.44322 6.57129 6.83351 6.99327 7.41339 7.54869 7.61837 7.77541 7.93148 8.70294 9.11243 9.62299 11.14051 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011788 B = 0.003034 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.755140 B = 9228.015391 C =10633.124550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.502 3.498 4 O -0.474 6.474 5 C -0.070 4.070 6 C -0.105 4.105 7 C -0.089 4.089 8 C -0.179 4.179 9 C 0.137 3.863 10 O -0.304 6.304 11 C 0.026 3.974 12 C -0.055 4.055 13 C 0.103 3.897 14 O -0.359 6.359 15 C 0.064 3.936 16 C -0.003 4.003 17 N -0.453 5.453 18 C 0.130 3.870 19 C -0.503 4.503 20 H 0.080 0.920 21 C 0.067 3.933 22 N -0.902 5.902 23 Si 0.874 3.126 24 H -0.277 1.277 25 H -0.267 1.267 26 H -0.285 1.285 27 C -0.005 4.005 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.027 0.973 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.069 0.931 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -27.306 14.718 32.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.346 3.654 4 O -0.361 6.361 5 C -0.072 4.072 6 C -0.124 4.124 7 C -0.107 4.107 8 C -0.198 4.198 9 C 0.091 3.909 10 O -0.217 6.217 11 C -0.069 4.069 12 C -0.056 4.056 13 C 0.026 3.974 14 O -0.277 6.277 15 C 0.005 3.995 16 C -0.133 4.133 17 N -0.177 5.177 18 C 0.003 3.997 19 C -0.542 4.542 20 H 0.098 0.902 21 C -0.134 4.134 22 N -0.541 5.541 23 Si 0.702 3.298 24 H -0.203 1.203 25 H -0.192 1.192 26 H -0.211 1.211 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.015 0.985 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.031 -26.210 14.708 31.109 hybrid contribution 0.613 -0.975 -1.366 1.786 sum 8.645 -27.185 13.342 31.492 Atomic orbital electron populations 1.23290 0.75698 1.03670 1.02959 1.86509 1.23723 1.32619 1.84633 1.21033 0.88863 0.81678 0.73839 1.90889 1.66529 1.35159 1.43510 1.18699 0.89418 0.93561 1.05496 1.21331 0.93800 0.97833 0.99395 1.20935 0.94234 0.97372 0.98207 1.21504 1.00592 0.92259 1.05400 1.18588 0.91096 0.85058 0.96169 1.86174 1.21446 1.26602 1.87473 1.23143 0.77930 1.04534 1.01326 1.19034 0.90630 0.94329 1.01649 1.21268 0.96955 0.91711 0.87431 1.87950 1.70683 1.42756 1.26293 1.23824 0.92610 0.84268 0.98770 1.24060 0.99255 0.92502 0.97441 1.68875 1.14977 1.13698 1.20107 1.20714 0.95548 0.98264 0.85156 1.20982 1.49320 0.89262 0.94619 0.90156 1.24911 0.94964 0.94822 0.98744 1.69899 1.50980 1.08365 1.24865 0.86867 0.78624 0.80795 0.83536 1.20282 1.19228 1.21078 1.24283 0.94070 0.95930 0.99206 0.91519 0.88052 0.91746 0.84171 0.84717 0.84593 0.92585 0.92388 0.87712 0.92366 0.90359 0.88822 0.90213 0.91734 0.95475 0.98546 0.92719 0.91270 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.68 9.83 -40.52 -0.40 -4.08 16 3 C 0.50 6.36 7.83 34.61 0.27 6.63 16 4 O -0.47 -7.19 12.67 -24.91 -0.32 -7.51 16 5 C -0.07 -0.83 5.87 -105.00 -0.62 -1.45 16 6 C -0.11 -0.94 9.61 -39.16 -0.38 -1.31 16 7 C -0.09 -0.66 10.02 -39.67 -0.40 -1.06 16 8 C -0.18 -1.49 9.03 -39.35 -0.36 -1.85 16 9 C 0.14 1.56 6.65 -39.27 -0.26 1.30 16 10 O -0.30 -3.48 9.41 -19.44 -0.18 -3.66 16 11 C 0.03 0.18 9.81 101.05 0.99 1.17 16 12 C -0.06 -0.72 5.56 -104.05 -0.58 -1.30 16 13 C 0.10 1.51 4.75 36.00 0.17 1.68 16 14 O -0.36 -6.35 9.76 -51.08 -0.50 -6.85 16 15 C 0.06 1.15 4.65 -26.20 -0.12 1.03 16 16 C 0.00 -0.06 7.52 -7.55 -0.06 -0.12 16 17 N -0.45 -10.57 6.32 -246.12 -1.55 -12.12 16 18 C 0.13 3.43 3.64 -4.98 -0.02 3.41 16 19 C -0.50 -15.27 9.94 -34.44 -0.34 -15.61 16 20 H 0.08 2.65 8.06 -52.48 -0.42 2.23 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -28.66 13.96 55.43 0.77 -27.89 16 23 Si 0.87 22.46 27.47 -169.99 -4.67 17.79 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 26 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 27 C -0.01 -0.11 7.55 -7.55 -0.06 -0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 0.97 7.62 -52.49 -0.40 0.57 16 32 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.14 0.77 6.28 -52.49 -0.33 0.44 16 34 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 35 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 38 H 0.08 1.15 5.92 -51.93 -0.31 0.85 16 39 H 0.09 1.57 7.88 -51.93 -0.41 1.16 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.30 7.91 -51.93 -0.41 0.89 16 42 H 0.03 0.72 7.14 -51.93 -0.37 0.35 16 43 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 45 H 0.07 1.48 7.42 -51.93 -0.39 1.09 16 46 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -36.36 381.43 -8.56 -44.92 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.68 Total: -1.97 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.78 Total: -4.38 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.78 Total: -40.01 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.40 Total: -22.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.36 -8.56 -44.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223405643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.112 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds