Wall clock time and date at job start Tue Mar 31 2020 18:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00156 * 2 1 4 4 O 1.21468 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.11896 * 180.02562 * 5 3 2 7 7 C 1.37956 * 119.95826 * 180.02562 * 6 5 3 8 8 C 1.50700 * 119.89150 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46854 * 270.02001 * 8 7 6 10 10 C 1.42901 * 113.99519 * 180.02562 * 9 8 7 11 11 H 1.08994 * 110.64876 * 31.68816 * 10 9 8 12 12 C 1.55160 * 110.71869 * 155.02706 * 10 9 8 13 13 C 1.54911 * 101.58120 * 153.86367 * 12 10 9 14 14 N 1.47430 * 104.82969 * 322.98605 * 13 12 10 15 15 C 1.36934 * 125.64603 * 204.09269 * 14 13 12 16 16 H 1.07999 * 120.00113 * 180.02562 * 15 14 13 17 17 C 1.38817 * 120.00268 * 0.05020 * 15 14 13 18 18 N 1.31623 * 119.99649 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47281 * 89.99449 * 19 17 15 21 21 H 1.48495 * 109.46979 * 209.99310 * 19 17 15 22 22 H 1.48500 * 109.46979 * 329.99409 * 19 17 15 23 23 C 1.47016 * 108.70331 * 24.13263 * 14 13 12 24 24 C 1.38297 * 120.21109 * 0.02562 * 7 6 5 25 25 C 1.38816 * 120.24692 * 0.23501 * 24 7 6 26 26 O 1.35916 * 119.97909 * 179.72067 * 25 24 7 27 27 C 1.42901 * 117.00097 * 179.97438 * 26 25 24 28 28 C 1.38474 * 120.04157 * 359.48865 * 25 24 7 29 29 H 1.09000 * 109.47505 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47449 * 300.00091 * 1 2 3 31 31 H 1.09004 * 109.47197 * 60.00183 * 1 2 3 32 32 H 1.07998 * 120.02313 * 0.03960 * 6 5 3 33 33 H 1.08991 * 109.47272 * 30.02086 * 8 7 6 34 34 H 1.09000 * 109.46652 * 150.02441 * 8 7 6 35 35 H 1.08996 * 111.00232 * 271.93359 * 12 10 9 36 36 H 1.09000 * 111.00162 * 35.78481 * 12 10 9 37 37 H 1.08998 * 110.36367 * 204.15378 * 13 12 10 38 38 H 1.08991 * 110.46012 * 81.87151 * 13 12 10 39 39 H 0.97002 * 119.99759 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88048 * 239.52078 * 23 14 13 41 41 H 1.09002 * 109.88433 * 118.35848 * 23 14 13 42 42 H 1.08002 * 119.87106 * 179.97438 * 24 7 6 43 43 H 1.08997 * 109.47118 * 300.00494 * 27 26 25 44 44 H 1.09004 * 109.46652 * 59.99967 * 27 26 25 45 45 H 1.08997 * 109.46986 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.11352 * 180.25621 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.1756 2.5205 0.0011 7 6 5.5535 2.5888 0.0011 8 6 6.2389 3.9308 0.0011 9 8 6.4552 4.3552 -1.3462 10 6 7.1036 5.6236 -1.4590 11 1 7.7866 5.7817 -0.6244 12 6 7.8504 5.7398 -2.8141 13 6 7.8631 7.2735 -3.0317 14 7 6.5610 7.7381 -2.5197 15 6 5.9200 8.8883 -2.8956 16 1 4.9649 9.1414 -2.4597 17 6 6.4977 9.7287 -3.8374 18 7 7.6617 9.4203 -4.3687 19 14 5.6229 11.2974 -4.3508 20 1 6.0431 12.4116 -3.4635 21 1 5.9757 11.6236 -5.7559 22 1 4.1547 11.1039 -4.2411 23 6 6.0652 6.7626 -1.5379 24 6 6.3077 1.4295 0.0000 25 6 5.6838 0.1895 -0.0060 26 8 6.4304 -0.9463 -0.0127 27 6 5.7227 -2.1878 -0.0181 28 6 4.3015 0.1088 -0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.5897 3.4277 0.0018 33 1 5.6118 4.6591 0.5152 34 1 7.1970 3.8494 0.5146 35 1 8.8644 5.3479 -2.7362 36 1 7.2988 5.2370 -3.6085 37 1 7.9582 7.5053 -4.0924 38 1 8.6770 7.7313 -2.4695 39 1 8.0656 10.0077 -5.0265 40 1 5.1035 6.3655 -1.8631 41 1 5.9616 7.2380 -0.5626 42 1 7.3860 1.4894 -0.0004 43 1 5.0975 -2.2535 0.8724 44 1 5.0952 -2.2444 -0.9076 45 1 6.4356 -3.0123 -0.0237 46 1 3.8149 -0.8554 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223480144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:23 Heat of formation + Delta-G solvation = -105.769000 kcal Electronic energy + Delta-G solvation = -28239.759678 eV Core-core repulsion = 24096.426705 eV Total energy + Delta-G solvation = -4143.332973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01054 -40.08775 -38.61754 -37.67380 -36.65409 -35.77610 -32.68175 -31.91377 -30.82489 -29.15975 -28.21845 -27.77431 -27.10578 -25.93048 -24.43014 -24.20527 -21.77057 -21.01435 -20.20525 -20.08710 -18.44970 -17.77304 -16.95294 -16.68500 -16.59249 -16.56448 -16.35559 -16.20380 -16.03205 -14.85008 -14.78930 -14.51624 -14.20235 -13.86390 -13.74275 -13.55765 -13.37108 -12.82101 -12.77128 -12.50314 -12.38709 -12.18293 -11.79978 -11.70988 -11.61153 -11.49363 -11.30080 -11.13376 -11.04970 -10.90337 -10.76760 -10.74774 -10.26075 -10.08438 -9.75650 -9.54336 -9.28459 -9.13039 -8.62568 -8.57947 -6.81023 -5.62706 -3.04337 0.36144 1.01700 2.24376 2.32657 2.88089 3.35613 3.42893 3.47692 3.50056 4.06875 4.23205 4.50235 4.55908 4.69146 4.76847 4.80085 4.81158 4.85634 4.87972 4.93296 5.08166 5.14019 5.14434 5.28063 5.37150 5.47249 5.48633 5.55062 5.62799 5.77346 5.79000 5.87934 5.92532 6.00157 6.26272 6.28693 6.36904 6.55303 6.61824 6.67296 6.75554 6.99159 7.42992 7.51533 7.61262 7.65802 7.87760 8.38443 9.24597 9.85305 10.49616 11.41522 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002410 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.574460 B =11616.484487 C =13249.631531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.509 3.491 4 O -0.496 6.496 5 C -0.093 4.093 6 C -0.065 4.065 7 C -0.054 4.054 8 C 0.100 3.900 9 O -0.370 6.370 10 C 0.075 3.925 11 H 0.065 0.935 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.115 3.885 24 C -0.091 4.091 25 C 0.112 3.888 26 O -0.313 6.313 27 C 0.025 3.975 28 C -0.151 4.151 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.034 0.966 41 H 0.021 0.979 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -25.579 11.755 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.354 3.646 4 O -0.384 6.384 5 C -0.094 4.094 6 C -0.084 4.084 7 C -0.054 4.054 8 C 0.023 3.977 9 O -0.289 6.289 10 C 0.017 3.983 11 H 0.083 0.917 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.573 5.573 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.011 4.011 24 C -0.110 4.110 25 C 0.067 3.933 26 O -0.227 6.227 27 C -0.070 4.070 28 C -0.170 4.170 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.159 0.841 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.229 -25.246 11.454 28.414 hybrid contribution -0.872 0.815 0.030 1.194 sum -7.101 -24.431 11.483 27.914 Atomic orbital electron populations 1.23305 0.75753 1.03782 1.02907 1.86518 1.23743 1.32694 1.84476 1.21164 0.89017 0.81512 0.72936 1.90874 1.66592 1.35915 1.45039 1.18759 0.88774 0.94244 1.07623 1.21148 0.93984 0.96962 0.96269 1.19393 0.92606 0.94361 0.99042 1.21286 0.98841 0.91364 0.86166 1.88013 1.80317 1.36833 1.23753 1.23298 0.93680 0.82316 0.98958 0.91716 1.23143 0.98305 1.00960 0.95102 1.21965 0.86579 0.85723 1.03010 1.44386 1.20465 1.22364 1.45708 1.19097 1.01641 0.95865 1.18272 0.90444 1.24796 0.97169 0.99273 0.99535 1.69780 1.17227 1.37783 1.32489 0.86049 0.78718 0.82935 0.77679 1.21644 1.21626 1.20672 1.21731 0.96045 0.90160 0.93163 1.20625 1.01193 0.88818 1.00356 1.18786 0.89398 0.86952 0.98196 1.86107 1.34975 1.12725 1.88894 1.23108 0.98520 0.83811 1.01573 1.21480 0.92650 0.99115 1.03775 0.87933 0.91692 0.91603 0.83854 0.91788 0.92033 0.91934 0.91105 0.87183 0.96803 0.93706 0.94782 0.96151 0.84105 0.92487 0.92402 0.88013 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.53 9.82 -40.52 -0.40 -3.93 16 3 C 0.51 6.29 7.90 34.61 0.27 6.56 16 4 O -0.50 -7.45 16.13 -19.24 -0.31 -7.76 16 5 C -0.09 -1.10 5.87 -105.00 -0.62 -1.72 16 6 C -0.07 -0.83 9.24 -39.16 -0.36 -1.19 16 7 C -0.05 -0.66 5.50 -104.70 -0.58 -1.24 16 8 C 0.10 1.30 5.93 36.01 0.21 1.52 16 9 O -0.37 -6.30 10.05 -35.23 -0.35 -6.66 16 10 C 0.08 1.39 3.40 -24.89 -0.08 1.31 16 11 H 0.06 1.08 7.88 -51.93 -0.41 0.67 16 12 C -0.14 -2.73 6.81 -24.58 -0.17 -2.90 16 13 C 0.15 3.78 5.89 -2.52 -0.01 3.77 16 14 N -0.60 -16.03 3.39 -170.07 -0.58 -16.61 16 15 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 18 N -0.92 -27.35 10.09 55.49 0.56 -26.79 16 19 Si 0.92 22.50 29.55 -169.99 -5.02 17.47 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.55 7.02 -3.07 -0.02 2.53 16 24 C -0.09 -1.02 9.63 -39.35 -0.38 -1.40 16 25 C 0.11 1.18 6.68 -39.28 -0.26 0.92 16 26 O -0.31 -2.99 10.50 -19.48 -0.20 -3.19 16 27 C 0.02 0.14 9.81 101.05 0.99 1.13 16 28 C -0.15 -1.52 8.60 -39.01 -0.34 -1.86 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.14 1.90 7.65 -52.49 -0.40 1.50 16 33 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.11 3.06 5.87 -51.93 -0.31 2.76 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 44 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.14 1.12 5.84 -52.48 -0.31 0.81 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -34.05 385.52 -7.85 -41.90 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.82 Total: -2.04 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.52 Total: 1.79 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.02 Total: -43.40 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.27 Total: -21.54 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.05 -7.85 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223480144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.870 kcal (2) G-P(sol) polarization free energy of solvation -34.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds