Wall clock time and date at job start Tue Mar 31 2020 18:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00156 * 2 1 4 4 O 1.21468 * 119.99488 * 0.02562 * 3 2 1 5 5 C 1.47740 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.11896 * 180.02562 * 5 3 2 7 7 C 1.37956 * 119.95826 * 180.02562 * 6 5 3 8 8 C 1.50700 * 119.89150 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46854 * 270.02001 * 8 7 6 10 10 C 1.42901 * 113.99519 * 180.02562 * 9 8 7 11 11 H 1.08994 * 110.64876 * 31.68816 * 10 9 8 12 12 C 1.55160 * 110.71869 * 155.02706 * 10 9 8 13 13 C 1.54911 * 101.58120 * 153.86367 * 12 10 9 14 14 N 1.47430 * 104.82969 * 322.98605 * 13 12 10 15 15 C 1.36934 * 125.64603 * 204.09269 * 14 13 12 16 16 H 1.07999 * 120.00113 * 180.02562 * 15 14 13 17 17 C 1.38817 * 120.00268 * 0.05020 * 15 14 13 18 18 N 1.31623 * 119.99649 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47281 * 89.99449 * 19 17 15 21 21 H 1.48495 * 109.46979 * 209.99310 * 19 17 15 22 22 H 1.48500 * 109.46979 * 329.99409 * 19 17 15 23 23 C 1.47016 * 108.70331 * 24.13263 * 14 13 12 24 24 C 1.38297 * 120.21109 * 0.02562 * 7 6 5 25 25 C 1.38816 * 120.24692 * 0.23501 * 24 7 6 26 26 O 1.35916 * 119.97909 * 179.72067 * 25 24 7 27 27 C 1.42901 * 117.00097 * 179.97438 * 26 25 24 28 28 C 1.38474 * 120.04157 * 359.48865 * 25 24 7 29 29 H 1.09000 * 109.47505 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47449 * 300.00091 * 1 2 3 31 31 H 1.09004 * 109.47197 * 60.00183 * 1 2 3 32 32 H 1.07998 * 120.02313 * 0.03960 * 6 5 3 33 33 H 1.08991 * 109.47272 * 30.02086 * 8 7 6 34 34 H 1.09000 * 109.46652 * 150.02441 * 8 7 6 35 35 H 1.08996 * 111.00232 * 271.93359 * 12 10 9 36 36 H 1.09000 * 111.00162 * 35.78481 * 12 10 9 37 37 H 1.08998 * 110.36367 * 204.15378 * 13 12 10 38 38 H 1.08991 * 110.46012 * 81.87151 * 13 12 10 39 39 H 0.97002 * 119.99759 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88048 * 239.52078 * 23 14 13 41 41 H 1.09002 * 109.88433 * 118.35848 * 23 14 13 42 42 H 1.08002 * 119.87106 * 179.97438 * 24 7 6 43 43 H 1.08997 * 109.47118 * 300.00494 * 27 26 25 44 44 H 1.09004 * 109.46652 * 59.99967 * 27 26 25 45 45 H 1.08997 * 109.46986 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.11352 * 180.25621 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.1756 2.5205 0.0011 7 6 5.5535 2.5888 0.0011 8 6 6.2389 3.9308 0.0011 9 8 6.4552 4.3552 -1.3462 10 6 7.1036 5.6236 -1.4590 11 1 7.7866 5.7817 -0.6244 12 6 7.8504 5.7398 -2.8141 13 6 7.8631 7.2735 -3.0317 14 7 6.5610 7.7381 -2.5197 15 6 5.9200 8.8883 -2.8956 16 1 4.9649 9.1414 -2.4597 17 6 6.4977 9.7287 -3.8374 18 7 7.6617 9.4203 -4.3687 19 14 5.6229 11.2974 -4.3508 20 1 6.0431 12.4116 -3.4635 21 1 5.9757 11.6236 -5.7559 22 1 4.1547 11.1039 -4.2411 23 6 6.0652 6.7626 -1.5379 24 6 6.3077 1.4295 0.0000 25 6 5.6838 0.1895 -0.0060 26 8 6.4304 -0.9463 -0.0127 27 6 5.7227 -2.1878 -0.0181 28 6 4.3015 0.1088 -0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.5897 3.4277 0.0018 33 1 5.6118 4.6591 0.5152 34 1 7.1970 3.8494 0.5146 35 1 8.8644 5.3479 -2.7362 36 1 7.2988 5.2370 -3.6085 37 1 7.9582 7.5053 -4.0924 38 1 8.6770 7.7313 -2.4695 39 1 8.0656 10.0077 -5.0265 40 1 5.1035 6.3655 -1.8631 41 1 5.9616 7.2380 -0.5626 42 1 7.3860 1.4894 -0.0004 43 1 5.0975 -2.2535 0.8724 44 1 5.0952 -2.2444 -0.9076 45 1 6.4356 -3.0123 -0.0237 46 1 3.8149 -0.8554 -0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223480144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:22 Heat of formation + Delta-G solvation = -126.581681 kcal Electronic energy + Delta-G solvation = -28240.662183 eV Core-core repulsion = 24096.426705 eV Total energy + Delta-G solvation = -4144.235479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.87679 -40.90251 -39.94861 -38.69553 -37.62502 -37.25878 -34.31688 -33.23762 -31.70868 -31.01458 -28.98681 -28.78851 -28.29556 -27.06340 -26.09154 -25.26166 -22.61174 -22.11554 -21.84925 -21.72576 -19.32799 -18.94547 -18.61604 -17.93614 -17.49802 -17.35551 -17.20120 -17.09948 -16.76152 -16.64152 -16.25860 -15.79920 -15.38592 -15.14127 -14.74686 -14.53163 -14.47280 -14.25972 -13.83839 -13.66778 -13.51490 -13.20077 -13.15266 -12.99756 -12.91927 -12.73500 -12.60169 -12.40698 -12.36058 -12.05397 -12.02907 -12.01067 -11.89697 -11.77433 -11.63504 -11.32665 -10.76461 -10.51316 -10.18729 -9.39166 -8.91577 -7.79270 -5.24216 -0.52296 0.13524 1.32825 1.45865 1.48180 1.53637 1.57092 2.21867 2.41224 2.49669 2.94471 3.31100 3.42775 3.62330 3.73261 3.84628 3.95944 4.00903 4.02428 4.11454 4.19856 4.21648 4.26191 4.29919 4.33960 4.44463 4.46859 4.51887 4.66053 4.67152 4.69289 4.79430 4.81835 4.97361 5.00818 5.02457 5.06396 5.08454 5.14827 5.36764 5.42898 5.44078 5.61874 5.77969 6.25824 6.30014 6.32655 6.53766 7.09006 7.75218 8.38617 9.22828 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002410 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.574460 B =11616.484487 C =13249.631531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.511 3.489 4 O -0.533 6.533 5 C -0.105 4.105 6 C -0.082 4.082 7 C -0.062 4.062 8 C 0.095 3.905 9 O -0.383 6.383 10 C 0.094 3.906 11 H 0.093 0.907 12 C -0.124 4.124 13 C 0.154 3.846 14 N -0.626 5.626 15 C -0.243 4.243 16 H 0.077 0.923 17 C -0.066 4.066 18 N -0.948 5.948 19 Si 0.983 3.017 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.272 1.272 23 C 0.110 3.890 24 C -0.093 4.093 25 C 0.113 3.887 26 O -0.324 6.324 27 C 0.013 3.987 28 C -0.138 4.138 29 H 0.140 0.860 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.076 0.924 38 H -0.001 1.001 39 H 0.249 0.751 40 H 0.021 0.979 41 H 0.029 0.971 42 H 0.155 0.845 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.123 0.877 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -27.949 12.770 31.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.357 3.643 4 O -0.424 6.424 5 C -0.106 4.106 6 C -0.101 4.101 7 C -0.062 4.062 8 C 0.019 3.981 9 O -0.302 6.302 10 C 0.036 3.964 11 H 0.110 0.890 12 C -0.162 4.162 13 C 0.029 3.971 14 N -0.353 5.353 15 C -0.372 4.372 16 H 0.095 0.905 17 C -0.259 4.259 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.197 1.197 23 C -0.015 4.015 24 C -0.111 4.111 25 C 0.068 3.932 26 O -0.238 6.238 27 C -0.081 4.081 28 C -0.157 4.157 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.017 0.983 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.173 0.827 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.207 -27.671 12.494 30.989 hybrid contribution -0.944 1.376 -0.242 1.686 sum -7.151 -26.296 12.252 29.878 Atomic orbital electron populations 1.23641 0.74012 1.06183 1.02665 1.86508 1.25407 1.31146 1.83764 1.21309 0.89247 0.81695 0.72019 1.90854 1.67355 1.37191 1.46992 1.18819 0.88803 0.94613 1.08362 1.21123 0.94399 0.96991 0.97564 1.19308 0.92313 0.94502 1.00118 1.21522 1.00451 0.91748 0.84393 1.87985 1.80205 1.35516 1.26487 1.23011 0.92621 0.81865 0.98917 0.88966 1.22952 1.00427 0.97022 0.95818 1.21757 0.85675 0.89095 1.00574 1.44700 1.21069 1.22631 1.46902 1.19445 1.02018 0.97062 1.18633 0.90473 1.25659 0.98063 1.02468 0.99669 1.70028 1.18386 1.38623 1.32747 0.85018 0.77962 0.79001 0.76969 1.21034 1.21641 1.19749 1.21908 0.96624 0.90737 0.92279 1.20793 1.01871 0.88761 0.99706 1.18839 0.89519 0.87393 0.97469 1.86108 1.35716 1.13414 1.88564 1.23447 0.99477 0.82614 1.02560 1.21672 0.92539 0.99383 1.02124 0.84174 0.91745 0.92148 0.85450 0.91661 0.89240 0.88594 0.92138 0.90590 0.98257 0.94115 0.96129 0.95329 0.82730 0.91182 0.91660 0.85913 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.45 9.82 -56.22 -0.55 -7.01 16 3 C 0.51 12.54 7.90 70.33 0.56 13.09 16 4 O -0.53 -16.47 16.13 19.94 0.32 -16.15 16 5 C -0.10 -2.44 5.87 -20.11 -0.12 -2.55 16 6 C -0.08 -2.12 9.24 22.54 0.21 -1.91 16 7 C -0.06 -1.47 5.50 -19.92 -0.11 -1.58 16 8 C 0.09 2.32 5.93 71.24 0.42 2.75 16 9 O -0.38 -12.51 10.05 -148.98 -1.50 -14.00 16 10 C 0.09 3.35 3.40 31.79 0.11 3.46 16 11 H 0.09 2.82 7.88 -2.39 -0.02 2.80 16 12 C -0.12 -4.85 6.81 31.99 0.22 -4.63 16 13 C 0.15 7.80 5.89 86.85 0.51 8.31 16 14 N -0.63 -33.98 3.39 -691.98 -2.35 -36.33 16 15 C -0.24 -14.24 10.27 84.04 0.86 -13.38 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 18 N -0.95 -57.54 10.09 21.65 0.22 -57.32 16 19 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.11 4.89 7.02 86.73 0.61 5.50 16 24 C -0.09 -1.90 9.63 22.42 0.22 -1.68 16 25 C 0.11 2.14 6.68 22.46 0.15 2.29 16 26 O -0.32 -5.29 10.50 -92.61 -0.97 -6.26 16 27 C 0.01 0.10 9.81 113.37 1.11 1.22 16 28 C -0.14 -2.51 8.60 22.64 0.19 -2.32 16 29 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.13 3.60 7.65 -2.91 -0.02 3.58 16 33 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.09 1.70 8.05 -2.39 -0.02 1.69 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.08 4.38 5.87 -2.39 -0.01 4.37 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.02 0.96 8.06 -2.38 -0.02 0.94 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 43 H 0.07 0.39 7.65 -2.39 -0.02 0.38 16 44 H 0.06 0.44 7.67 -2.39 -0.02 0.42 16 45 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.17 2.12 5.84 -2.91 -0.02 2.10 16 Total: -1.00 -75.53 385.52 4.78 -70.75 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.98 Total: 10.72 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.60 Total: 6.71 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -2.13 Total: -93.65 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -2.70 Total: -43.42 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.53 4.78 -70.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223480144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.836 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds