Wall clock time and date at job start Tue Mar 31 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34706 * 117.00054 * 2 1 4 4 O 1.21470 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.12342 * 180.29347 * 5 3 2 7 7 C 1.37944 * 119.95856 * 180.21235 * 6 5 3 8 8 C 1.50702 * 119.89545 * 179.79132 * 7 6 5 9 9 O 1.42897 * 109.47328 * 269.72821 * 8 7 6 10 10 C 1.42894 * 114.00059 * 179.97438 * 9 8 7 11 11 H 1.08995 * 110.64279 * 328.30547 * 10 9 8 12 12 C 1.55163 * 110.71781 * 204.97441 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.96579 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.38297 * 120.21646 * 359.51663 * 7 6 5 25 25 C 1.38827 * 120.24453 * 0.23377 * 24 7 6 26 26 O 1.35909 * 119.98055 * 180.02562 * 25 24 7 27 27 C 1.42900 * 116.99921 * 179.97438 * 26 25 24 28 28 C 1.38481 * 120.03801 * 359.97438 * 25 24 7 29 29 H 1.09001 * 109.47038 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47444 * 60.00355 * 1 2 3 31 31 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.01668 * 0.02562 * 6 5 3 33 33 H 1.08995 * 109.47201 * 149.72223 * 8 7 6 34 34 H 1.08999 * 109.46497 * 29.72410 * 8 7 6 35 35 H 1.08998 * 111.00445 * 324.20357 * 12 10 9 36 36 H 1.09003 * 111.00541 * 88.02390 * 12 10 9 37 37 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 38 38 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 39 39 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 40 40 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 41 41 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 42 42 H 1.07996 * 119.88133 * 180.25688 * 24 7 6 43 43 H 1.08998 * 109.46988 * 299.99627 * 27 26 25 44 44 H 1.08997 * 109.47269 * 59.99526 * 27 26 25 45 45 H 1.09004 * 109.47027 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.10884 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1756 2.5206 0.0068 7 6 5.5534 2.5889 0.0028 8 6 6.2389 3.9309 0.0048 9 8 6.4573 4.3562 -1.3418 10 6 7.1049 5.6252 -1.4528 11 1 6.8317 6.2703 -0.6179 12 6 6.7625 6.2996 -2.8076 13 6 7.9985 7.2130 -3.0190 14 7 9.1370 6.4264 -2.5107 15 6 10.4450 6.5817 -2.8853 16 1 11.1739 5.8278 -2.6267 17 6 10.8340 7.7080 -3.5973 18 7 10.1636 8.8331 -3.4667 19 14 12.3089 7.6269 -4.7407 20 1 12.0658 6.6052 -5.7906 21 1 13.5189 7.2588 -3.9625 22 1 12.5149 8.9525 -5.3777 23 6 8.6364 5.4516 -1.5304 24 6 6.3077 1.4297 0.0029 25 6 5.6839 0.1895 0.0020 26 8 6.4304 -0.9462 0.0025 27 6 5.7228 -2.1877 0.0021 28 6 4.3014 0.1089 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5897 3.4277 0.0116 33 1 7.1961 3.8493 0.5198 34 1 5.6109 4.6589 0.5184 35 1 6.6793 5.5588 -3.6028 36 1 5.8500 6.8908 -2.7302 37 1 7.8920 8.1370 -2.4507 38 1 8.1313 7.4315 -4.0786 39 1 9.4517 8.9003 -2.8111 40 1 8.8788 4.4402 -1.8563 41 1 9.0813 5.6457 -0.5545 42 1 7.3860 1.4895 0.0040 43 1 5.0959 -2.2489 0.8917 44 1 5.0970 -2.2489 -0.8882 45 1 6.4357 -3.0123 0.0022 46 1 3.8150 -0.8553 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223480350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:27 Heat of formation + Delta-G solvation = -109.666800 kcal Electronic energy + Delta-G solvation = -28204.171031 eV Core-core repulsion = 24060.669037 eV Total energy + Delta-G solvation = -4143.501994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06909 -40.13463 -38.73883 -37.77936 -36.73789 -35.99965 -32.80880 -32.02464 -30.86363 -29.15559 -28.27963 -27.80769 -27.26461 -25.92938 -24.49193 -24.11085 -21.81237 -21.07857 -20.40507 -20.15167 -18.50874 -17.83403 -17.55601 -16.77237 -16.67492 -16.63170 -16.37516 -16.32066 -16.05085 -15.10488 -14.83098 -14.25269 -14.12295 -13.83025 -13.81187 -13.56537 -13.52682 -13.08062 -12.86119 -12.74619 -12.56645 -12.26462 -12.18841 -11.77582 -11.66480 -11.57985 -11.39421 -11.20789 -11.10577 -10.83690 -10.72410 -10.58295 -10.46706 -10.01670 -9.97391 -9.52976 -9.35964 -9.21772 -8.61816 -8.39877 -6.93170 -6.06950 -3.09399 0.31059 0.96594 2.18021 2.26017 2.86821 3.29783 3.52670 3.57553 3.74982 3.97808 4.17789 4.47013 4.62884 4.66558 4.70176 4.76121 4.78595 4.79836 4.83193 4.89061 5.01584 5.07886 5.13342 5.17915 5.25420 5.28392 5.42454 5.45280 5.53407 5.58173 5.72485 5.76387 5.85184 5.93523 6.09269 6.19550 6.24614 6.28513 6.40861 6.53055 6.63434 6.97603 6.98579 7.05701 7.35290 7.49818 7.80106 8.50428 9.04682 9.84577 10.38311 11.26529 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002238 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.762384 B =12509.353415 C =13700.927051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.499 6.499 5 C -0.094 4.094 6 C -0.067 4.067 7 C -0.055 4.055 8 C 0.100 3.900 9 O -0.369 6.369 10 C 0.076 3.924 11 H 0.067 0.933 12 C -0.129 4.129 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.334 4.334 16 H 0.067 0.933 17 C -0.028 4.028 18 N -0.921 5.921 19 Si 1.065 2.935 20 H -0.294 1.294 21 H -0.293 1.293 22 H -0.285 1.285 23 C 0.117 3.883 24 C -0.089 4.089 25 C 0.113 3.887 26 O -0.312 6.312 27 C 0.025 3.975 28 C -0.151 4.151 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.142 0.858 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.268 0.732 40 H 0.036 0.964 41 H 0.022 0.978 42 H 0.143 0.857 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.605 -21.707 10.289 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.388 6.388 5 C -0.096 4.096 6 C -0.086 4.086 7 C -0.055 4.055 8 C 0.024 3.976 9 O -0.288 6.288 10 C 0.018 3.982 11 H 0.085 0.915 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.331 5.331 15 C -0.462 4.462 16 H 0.084 0.916 17 C -0.229 4.229 18 N -0.563 5.563 19 Si 0.895 3.105 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.211 1.211 23 C -0.009 4.009 24 C -0.108 4.108 25 C 0.068 3.932 26 O -0.225 6.225 27 C -0.070 4.070 28 C -0.170 4.170 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.161 0.839 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.691 -20.694 8.999 28.068 hybrid contribution -1.252 -0.944 1.445 2.132 sum -17.942 -21.638 10.444 29.987 Atomic orbital electron populations 1.23310 0.75729 1.03847 1.02856 1.86525 1.23760 1.32663 1.84400 1.21160 0.89004 0.81492 0.72792 1.90857 1.66648 1.35948 1.45324 1.18747 0.88734 0.94260 1.07815 1.21089 0.93864 0.96851 0.96747 1.19363 0.92553 0.94342 0.99223 1.21296 0.98974 0.91409 0.85939 1.87995 1.79573 1.37224 1.24046 1.23241 0.93057 0.83348 0.98540 0.91515 1.22972 0.98892 0.98968 0.95909 1.21610 0.84877 0.92594 0.98996 1.44459 1.03238 1.40069 1.45302 1.19769 0.83968 1.05827 1.36601 0.91563 1.25741 1.04198 0.90890 1.02022 1.70794 1.24292 1.24039 1.37160 0.83518 0.74808 0.75592 0.76591 1.22100 1.22048 1.21071 1.21747 0.91357 0.94788 0.93028 1.20681 1.01420 0.88830 0.99849 1.18805 0.89386 0.87020 0.97953 1.86126 1.34930 1.12708 1.88781 1.23116 0.98546 0.83833 1.01527 1.21488 0.92648 0.99135 1.03706 0.91689 0.91631 0.87882 0.84021 0.91719 0.91942 0.90632 0.91417 0.95478 0.92383 0.91986 0.94590 0.96029 0.83933 0.92482 0.92403 0.87950 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.30 9.82 -40.51 -0.40 -3.69 16 3 C 0.51 5.89 7.90 34.62 0.27 6.16 16 4 O -0.50 -6.92 16.13 -19.24 -0.31 -7.24 16 5 C -0.09 -1.06 5.87 -105.00 -0.62 -1.68 16 6 C -0.07 -0.80 9.24 -39.16 -0.36 -1.16 16 7 C -0.05 -0.66 5.50 -104.71 -0.58 -1.24 16 8 C 0.10 1.28 5.93 36.01 0.21 1.50 16 9 O -0.37 -6.13 10.05 -35.23 -0.35 -6.48 16 10 C 0.08 1.37 3.40 -24.90 -0.08 1.29 16 11 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 12 C -0.13 -2.47 6.82 -24.45 -0.17 -2.63 16 13 C 0.14 3.46 5.22 -2.40 -0.01 3.45 16 14 N -0.60 -15.87 3.33 -169.93 -0.57 -16.43 16 15 C -0.33 -9.71 10.05 -15.06 -0.15 -9.86 16 16 H 0.07 1.91 7.96 -52.48 -0.42 1.50 16 17 C -0.03 -0.80 5.09 -17.43 -0.09 -0.89 16 18 N -0.92 -28.23 12.82 55.49 0.71 -27.52 16 19 Si 1.07 25.83 30.00 -169.99 -5.10 20.73 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.12 2.55 7.02 -3.06 -0.02 2.53 16 24 C -0.09 -1.03 9.63 -39.34 -0.38 -1.41 16 25 C 0.11 1.22 6.68 -39.27 -0.26 0.96 16 26 O -0.31 -3.11 10.50 -19.46 -0.20 -3.32 16 27 C 0.02 0.15 9.81 101.05 0.99 1.14 16 28 C -0.15 -1.49 8.60 -39.01 -0.34 -1.82 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 33 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.03 0.67 6.84 -51.93 -0.36 0.32 16 38 H 0.06 1.51 7.73 -51.93 -0.40 1.11 16 39 H 0.27 8.19 5.83 -40.82 -0.24 7.95 16 40 H 0.04 0.80 8.06 -51.93 -0.42 0.39 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 44 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.14 1.09 5.84 -52.49 -0.31 0.79 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -35.09 385.55 -7.68 -42.77 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.76 Total: -2.25 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.51 Total: -2.39 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.15 Total: -43.95 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -1.27 Total: -20.72 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.10 Total: 20.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.09 -7.68 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223480350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.898 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds