Wall clock time and date at job start Tue Mar 31 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34706 * 117.00054 * 2 1 4 4 O 1.21470 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.47743 * 120.00168 * 179.97438 * 3 2 1 6 6 C 1.39659 * 120.12342 * 180.29347 * 5 3 2 7 7 C 1.37944 * 119.95856 * 180.21235 * 6 5 3 8 8 C 1.50702 * 119.89545 * 179.79132 * 7 6 5 9 9 O 1.42897 * 109.47328 * 269.72821 * 8 7 6 10 10 C 1.42894 * 114.00059 * 179.97438 * 9 8 7 11 11 H 1.08995 * 110.64279 * 328.30547 * 10 9 8 12 12 C 1.55163 * 110.71781 * 204.97441 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.96579 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.38297 * 120.21646 * 359.51663 * 7 6 5 25 25 C 1.38827 * 120.24453 * 0.23377 * 24 7 6 26 26 O 1.35909 * 119.98055 * 180.02562 * 25 24 7 27 27 C 1.42900 * 116.99921 * 179.97438 * 26 25 24 28 28 C 1.38481 * 120.03801 * 359.97438 * 25 24 7 29 29 H 1.09001 * 109.47038 * 299.99682 * 1 2 3 30 30 H 1.08998 * 109.47444 * 60.00355 * 1 2 3 31 31 H 1.09007 * 109.46907 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.01668 * 0.02562 * 6 5 3 33 33 H 1.08995 * 109.47201 * 149.72223 * 8 7 6 34 34 H 1.08999 * 109.46497 * 29.72410 * 8 7 6 35 35 H 1.08998 * 111.00445 * 324.20357 * 12 10 9 36 36 H 1.09003 * 111.00541 * 88.02390 * 12 10 9 37 37 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 38 38 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 39 39 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 40 40 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 41 41 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 42 42 H 1.07996 * 119.88133 * 180.25688 * 24 7 6 43 43 H 1.08998 * 109.46988 * 299.99627 * 27 26 25 44 44 H 1.08997 * 109.47269 * 59.99526 * 27 26 25 45 45 H 1.09004 * 109.47027 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.10884 * 180.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1756 2.5206 0.0068 7 6 5.5534 2.5889 0.0028 8 6 6.2389 3.9309 0.0048 9 8 6.4573 4.3562 -1.3418 10 6 7.1049 5.6252 -1.4528 11 1 6.8317 6.2703 -0.6179 12 6 6.7625 6.2996 -2.8076 13 6 7.9985 7.2130 -3.0190 14 7 9.1370 6.4264 -2.5107 15 6 10.4450 6.5817 -2.8853 16 1 11.1739 5.8278 -2.6267 17 6 10.8340 7.7080 -3.5973 18 7 10.1636 8.8331 -3.4667 19 14 12.3089 7.6269 -4.7407 20 1 12.0658 6.6052 -5.7906 21 1 13.5189 7.2588 -3.9625 22 1 12.5149 8.9525 -5.3777 23 6 8.6364 5.4516 -1.5304 24 6 6.3077 1.4297 0.0029 25 6 5.6839 0.1895 0.0020 26 8 6.4304 -0.9462 0.0025 27 6 5.7228 -2.1877 0.0021 28 6 4.3014 0.1089 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5897 3.4277 0.0116 33 1 7.1961 3.8493 0.5198 34 1 5.6109 4.6589 0.5184 35 1 6.6793 5.5588 -3.6028 36 1 5.8500 6.8908 -2.7302 37 1 7.8920 8.1370 -2.4507 38 1 8.1313 7.4315 -4.0786 39 1 9.4517 8.9003 -2.8111 40 1 8.8788 4.4402 -1.8563 41 1 9.0813 5.6457 -0.5545 42 1 7.3860 1.4895 0.0040 43 1 5.0959 -2.2489 0.8917 44 1 5.0970 -2.2489 -0.8882 45 1 6.4357 -3.0123 0.0022 46 1 3.8150 -0.8553 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223480350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:26 Heat of formation + Delta-G solvation = -131.295183 kcal Electronic energy + Delta-G solvation = -28205.108908 eV Core-core repulsion = 24060.669037 eV Total energy + Delta-G solvation = -4144.439872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88917 -40.92523 -40.10226 -38.78846 -37.69278 -37.37806 -34.48906 -33.26879 -31.72690 -31.01132 -29.08029 -28.81454 -28.32759 -27.02785 -26.07524 -25.27255 -22.62582 -22.19725 -21.96227 -21.79113 -19.66833 -19.31903 -18.62331 -18.03722 -17.49243 -17.37543 -17.21469 -17.16671 -16.69222 -16.64888 -16.18390 -15.66914 -15.40148 -15.27214 -15.06512 -14.69043 -14.53595 -14.51882 -14.00998 -13.81260 -13.57703 -13.27255 -13.13247 -12.95332 -12.76061 -12.61733 -12.53841 -12.50109 -12.41399 -12.23092 -12.07350 -11.89128 -11.88826 -11.66900 -11.60568 -11.58182 -10.67981 -10.49461 -10.22110 -9.42029 -9.06572 -8.35172 -5.34400 -0.54758 0.10877 1.31291 1.53484 1.57115 1.65769 1.84868 2.18965 2.37608 2.62740 2.87424 3.16950 3.40571 3.53293 3.58124 3.71161 3.86769 3.94051 3.99043 4.02976 4.08430 4.14060 4.25066 4.30925 4.31123 4.39055 4.41358 4.41933 4.49171 4.60381 4.63529 4.69637 4.78244 4.84296 4.91051 4.92341 4.94238 5.03688 5.05953 5.14366 5.24991 5.32864 5.40885 5.61842 6.19081 6.27614 6.29211 6.53475 6.87281 7.67746 8.24472 8.98311 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002238 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.762384 B =12509.353415 C =13700.927051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.530 6.530 5 C -0.104 4.104 6 C -0.075 4.075 7 C -0.062 4.062 8 C 0.095 3.905 9 O -0.380 6.380 10 C 0.094 3.906 11 H 0.090 0.910 12 C -0.116 4.116 13 C 0.147 3.853 14 N -0.627 5.627 15 C -0.349 4.349 16 H 0.061 0.939 17 C -0.079 4.079 18 N -0.947 5.947 19 Si 1.118 2.882 20 H -0.282 1.282 21 H -0.273 1.273 22 H -0.289 1.289 23 C 0.113 3.887 24 C -0.101 4.101 25 C 0.112 3.888 26 O -0.328 6.328 27 C 0.013 3.987 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.016 0.984 38 H 0.025 0.975 39 H 0.257 0.743 40 H 0.029 0.971 41 H 0.024 0.976 42 H 0.143 0.857 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 -23.969 10.808 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.360 3.640 4 O -0.421 6.421 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.062 4.062 8 C 0.019 3.981 9 O -0.299 6.299 10 C 0.036 3.964 11 H 0.108 0.892 12 C -0.154 4.154 13 C 0.022 3.978 14 N -0.356 5.356 15 C -0.477 4.477 16 H 0.078 0.922 17 C -0.275 4.275 18 N -0.590 5.590 19 Si 0.941 3.059 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.215 1.215 23 C -0.013 4.013 24 C -0.119 4.119 25 C 0.067 3.933 26 O -0.242 6.242 27 C -0.081 4.081 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.161 0.839 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.139 0.861 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.711 -23.015 9.547 30.570 hybrid contribution -1.010 -0.427 1.354 1.742 sum -18.721 -23.442 10.900 31.919 Atomic orbital electron populations 1.23645 0.73921 1.06164 1.02759 1.86514 1.25487 1.31248 1.83727 1.21209 0.89049 0.81719 0.72046 1.90840 1.67253 1.37022 1.46954 1.18843 0.88952 0.94548 1.08137 1.21113 0.93819 0.97241 0.97210 1.19270 0.92602 0.94105 1.00269 1.21522 0.99952 0.92340 0.84271 1.87973 1.79000 1.36300 1.26614 1.22956 0.90297 0.84516 0.98631 0.89202 1.22844 0.97764 0.98303 0.96507 1.21522 0.86445 0.93165 0.96661 1.44749 1.03088 1.40943 1.46777 1.20039 0.85425 1.05517 1.36721 0.92152 1.27186 1.06638 0.90462 1.03187 1.70900 1.25135 1.25080 1.37866 0.82831 0.72466 0.75549 0.75028 1.20848 1.19869 1.21478 1.21897 0.94319 0.93168 0.91878 1.20797 1.01562 0.89384 1.00183 1.18847 0.89723 0.87202 0.97547 1.86117 1.35949 1.13564 1.88572 1.23450 0.99439 0.82521 1.02656 1.21678 0.92238 0.99684 1.02034 0.91659 0.91946 0.84365 0.84310 0.90979 0.90007 0.91103 0.88128 0.96601 0.95612 0.93210 0.95336 0.95848 0.83950 0.91027 0.91500 0.86107 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.81 9.82 -56.15 -0.55 -6.36 16 3 C 0.51 11.25 7.90 70.34 0.56 11.80 16 4 O -0.53 -14.43 16.13 19.93 0.32 -14.11 16 5 C -0.10 -2.21 5.87 -20.11 -0.12 -2.33 16 6 C -0.08 -1.74 9.24 22.54 0.21 -1.53 16 7 C -0.06 -1.45 5.50 -19.92 -0.11 -1.56 16 8 C 0.09 2.30 5.93 71.24 0.42 2.72 16 9 O -0.38 -12.05 10.05 -148.98 -1.50 -13.55 16 10 C 0.09 3.28 3.40 31.78 0.11 3.39 16 11 H 0.09 2.74 7.88 -2.39 -0.02 2.73 16 12 C -0.12 -4.33 6.82 32.07 0.22 -4.11 16 13 C 0.15 7.18 5.22 86.94 0.45 7.63 16 14 N -0.63 -33.60 3.33 -691.53 -2.30 -35.90 16 15 C -0.35 -20.63 10.05 84.03 0.84 -19.78 16 16 H 0.06 3.54 7.96 -2.91 -0.02 3.52 16 17 C -0.08 -4.69 5.09 84.86 0.43 -4.25 16 18 N -0.95 -59.34 12.82 21.65 0.28 -59.06 16 19 Si 1.12 52.49 30.00 68.60 2.06 54.55 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 23 C 0.11 4.92 7.02 86.73 0.61 5.52 16 24 C -0.10 -2.25 9.63 22.42 0.22 -2.04 16 25 C 0.11 2.25 6.68 22.47 0.15 2.40 16 26 O -0.33 -5.97 10.50 -92.53 -0.97 -6.94 16 27 C 0.01 0.12 9.81 113.37 1.11 1.23 16 28 C -0.14 -2.44 8.60 22.64 0.19 -2.25 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.14 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.14 3.21 7.65 -2.91 -0.02 3.19 16 33 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.02 0.82 6.84 -2.39 -0.02 0.80 16 38 H 0.03 1.39 7.73 -2.39 -0.02 1.37 16 39 H 0.26 16.22 5.83 -92.70 -0.54 15.67 16 40 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 44 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 45 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.17 2.05 5.84 -2.91 -0.02 2.03 16 Total: -1.00 -77.10 385.55 5.04 -72.06 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.21 Total: 10.97 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.50 Total: -1.66 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -2.02 Total: -94.95 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -2.70 Total: -40.96 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.06 Total: 54.55 kcal Total: -77.10 5.04 -72.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223480350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.239 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds