Wall clock time and date at job start Tue Mar 31 2020 18:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34705 * 117.00110 * 2 1 4 4 O 1.21474 * 120.00124 * 0.02562 * 3 2 1 5 5 C 1.47744 * 119.99700 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.12017 * 180.02562 * 5 3 2 7 7 C 1.37943 * 119.96084 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.89791 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46976 * 89.99808 * 8 7 6 10 10 C 1.42906 * 113.99989 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.16874 * 210.00451 * 10 9 8 12 12 N 1.47489 * 87.92897 * 220.13926 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 C 1.38302 * 120.21356 * 0.25616 * 7 6 5 24 24 C 1.38819 * 120.24528 * 359.48449 * 23 7 6 25 25 O 1.35909 * 119.98491 * 180.25392 * 24 23 7 26 26 C 1.42897 * 117.00225 * 180.25605 * 25 24 23 27 27 C 1.38487 * 120.03613 * 0.51779 * 24 23 7 28 28 H 1.09001 * 109.46831 * 299.99628 * 1 2 3 29 29 H 1.08997 * 109.47411 * 59.99119 * 1 2 3 30 30 H 1.08996 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02016 * 359.97438 * 6 5 3 32 32 H 1.09004 * 109.46820 * 330.00288 * 8 7 6 33 33 H 1.09001 * 109.47394 * 210.00384 * 8 7 6 34 34 H 1.08995 * 113.25323 * 342.95576 * 10 9 8 35 35 H 1.08997 * 113.47543 * 105.37735 * 11 10 9 36 36 H 1.08997 * 113.47777 * 334.89811 * 11 10 9 37 37 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 38 38 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 41 41 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 42 42 H 1.07994 * 119.87739 * 179.72199 * 23 7 6 43 43 H 1.08995 * 109.47083 * 60.00737 * 26 25 24 44 44 H 1.09003 * 109.46655 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.47104 * 300.00096 * 26 25 24 46 46 H 1.07997 * 120.10580 * 179.76685 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2774 -0.0006 6 6 4.1757 2.5204 0.0000 7 6 5.5535 2.5886 0.0000 8 6 6.2391 3.9307 0.0000 9 8 6.4557 4.3548 1.3473 10 6 7.1033 5.6237 1.4601 11 6 7.9685 5.7780 2.7187 12 7 7.4632 7.1591 2.8317 13 6 7.1629 7.4970 4.2295 14 6 6.8874 8.9744 4.3409 15 1 6.9307 9.5997 3.4614 16 6 6.5791 9.5277 5.5657 17 7 6.3382 10.8169 5.6629 18 14 6.5036 8.4460 7.0868 19 1 5.1239 7.9231 7.2544 20 1 7.4483 7.3104 6.9340 21 1 6.8788 9.2447 8.2812 22 6 6.2490 6.7133 2.1232 23 6 6.3077 1.4294 -0.0059 24 6 5.6839 0.1893 -0.0011 25 8 6.4303 -0.9465 -0.0017 26 6 5.7227 -2.1879 -0.0022 27 6 4.3014 0.1088 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5898 3.4276 0.0004 32 1 5.6117 4.6591 -0.5139 33 1 7.1969 3.8494 -0.5139 34 1 7.5940 5.9398 0.5396 35 1 9.0387 5.7222 2.5195 36 1 7.6578 5.1335 3.5409 37 1 8.0156 7.2380 4.8572 38 1 6.2867 6.9381 4.5582 39 1 6.1209 11.2060 6.5245 40 1 5.4796 6.3183 2.7864 41 1 5.8620 7.4500 1.4192 42 1 7.3860 1.4892 -0.0104 43 1 5.0964 -2.2487 -0.8922 44 1 6.4356 -3.0125 -0.0022 45 1 5.0964 -2.2495 0.8879 46 1 3.8149 -0.8554 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223485439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:01 Heat of formation + Delta-G solvation = -89.979184 kcal Electronic energy + Delta-G solvation = -27840.744794 eV Core-core repulsion = 23698.096519 eV Total energy + Delta-G solvation = -4142.648275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10732 -40.18952 -39.66937 -38.16747 -36.83482 -36.39457 -32.86429 -32.43672 -30.98410 -29.64026 -28.28799 -27.83942 -26.36107 -25.48247 -24.94064 -24.51799 -21.87779 -21.23312 -21.11536 -19.56880 -18.53862 -17.86033 -16.99537 -16.74939 -16.68681 -16.66129 -16.49968 -16.39474 -16.12662 -15.45088 -15.06560 -14.46186 -14.28998 -14.15480 -13.87371 -13.83492 -13.52541 -13.19692 -12.86850 -12.78135 -12.57797 -12.36736 -12.20856 -12.15043 -11.82847 -11.69044 -11.57238 -11.40771 -11.25143 -11.20411 -10.86496 -10.82145 -10.56992 -9.97570 -9.75600 -9.41990 -9.33685 -9.24920 -8.68728 -8.56413 -8.05751 -6.03674 -4.01045 0.25445 0.89757 2.14520 2.24480 2.78831 3.22484 3.29645 3.36969 3.38942 3.84901 4.13352 4.38456 4.43194 4.59221 4.66671 4.70869 4.73281 4.75327 4.77066 4.79623 4.79912 4.87975 4.96108 5.05362 5.07617 5.16473 5.22412 5.27187 5.33596 5.45766 5.68403 5.75399 5.81644 5.90577 5.94983 6.05867 6.12740 6.16780 6.22984 6.27171 6.44897 6.74388 6.89455 7.30113 7.31777 7.34306 7.69694 7.82542 8.63913 9.06395 9.57491 11.09643 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.002287 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.147751 B =12242.432300 C =13323.778796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.509 3.491 4 O -0.496 6.496 5 C -0.092 4.092 6 C -0.066 4.066 7 C -0.057 4.057 8 C 0.101 3.899 9 O -0.368 6.368 10 C 0.052 3.948 11 C -0.006 4.006 12 N -0.452 5.452 13 C 0.130 3.870 14 C -0.506 4.506 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.267 1.267 21 H -0.285 1.285 22 C -0.006 4.006 23 C -0.091 4.091 24 C 0.113 3.887 25 O -0.313 6.313 26 C 0.025 3.975 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.028 0.972 38 H -0.002 1.002 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 -29.652 -16.041 34.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.384 6.384 5 C -0.093 4.093 6 C -0.085 4.085 7 C -0.058 4.058 8 C 0.025 3.975 9 O -0.286 6.286 10 C -0.006 4.006 11 C -0.136 4.136 12 N -0.176 5.176 13 C 0.003 3.997 14 C -0.545 4.545 15 H 0.099 0.901 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.192 1.192 21 H -0.210 1.210 22 C -0.135 4.135 23 C -0.110 4.110 24 C 0.067 3.933 25 O -0.227 6.227 26 C -0.070 4.070 27 C -0.169 4.169 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.162 0.838 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.159 0.841 43 H 0.076 0.924 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.404 -28.767 -15.955 33.336 hybrid contribution -1.056 -1.077 1.244 1.955 sum -6.460 -29.844 -14.711 33.894 Atomic orbital electron populations 1.23316 0.75646 1.03851 1.02936 1.86517 1.23825 1.32637 1.84418 1.21154 0.88999 0.81551 0.72949 1.90876 1.66604 1.35910 1.45049 1.18768 0.88836 0.94240 1.07480 1.21133 0.93936 0.96985 0.96404 1.19358 0.92613 0.94293 0.99493 1.21329 0.99037 0.91527 0.85641 1.88030 1.79549 1.36630 1.24436 1.24028 0.95022 0.82882 0.98633 1.24114 0.99966 0.93069 0.96404 1.68915 1.15279 1.17177 1.16216 1.20726 0.95149 0.98433 0.85363 1.20956 1.46579 0.90925 0.96014 0.90145 1.24921 0.94934 0.94904 0.98667 1.69896 1.48083 1.10849 1.25066 0.86866 0.78818 0.80956 0.83164 1.20241 1.19210 1.21049 1.24279 0.94923 0.95676 0.98631 1.20626 1.01192 0.88835 1.00356 1.18798 0.89402 0.87008 0.98049 1.86108 1.34983 1.12739 1.88830 1.23121 0.98557 0.83759 1.01606 1.21506 0.92669 0.99187 1.03538 0.91577 0.91649 0.87881 0.83849 0.91571 0.91723 0.88360 0.89964 0.91332 0.95365 0.98428 0.92652 0.90980 0.90032 0.84069 0.92434 0.87946 0.92372 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.26 9.81 -40.51 -0.40 -3.66 16 3 C 0.51 5.81 7.90 34.62 0.27 6.08 16 4 O -0.50 -6.96 16.13 -19.25 -0.31 -7.27 16 5 C -0.09 -0.99 5.87 -105.00 -0.62 -1.61 16 6 C -0.07 -0.74 9.24 -39.16 -0.36 -1.11 16 7 C -0.06 -0.61 5.50 -104.71 -0.58 -1.19 16 8 C 0.10 1.08 5.90 36.01 0.21 1.29 16 9 O -0.37 -5.25 10.38 -35.23 -0.37 -5.62 16 10 C 0.05 0.79 4.65 -26.20 -0.12 0.67 16 11 C -0.01 -0.11 7.52 -7.54 -0.06 -0.16 16 12 N -0.45 -9.75 6.32 -246.10 -1.55 -11.31 16 13 C 0.13 3.27 3.64 -4.98 -0.02 3.25 16 14 C -0.51 -14.92 9.94 -34.44 -0.34 -15.26 16 15 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 18 Si 0.87 21.99 27.47 -169.99 -4.67 17.32 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 22 C -0.01 -0.11 7.56 -7.54 -0.06 -0.16 16 23 C -0.09 -0.90 9.63 -39.34 -0.38 -1.28 16 24 C 0.11 1.07 6.68 -39.27 -0.26 0.81 16 25 O -0.31 -2.71 10.49 -19.45 -0.20 -2.92 16 26 C 0.02 0.12 9.81 101.05 0.99 1.11 16 27 C -0.15 -1.36 8.60 -39.01 -0.34 -1.70 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.65 7.65 -52.49 -0.40 1.25 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.10 1.27 7.88 -51.93 -0.41 0.86 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 37 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 38 H 0.00 -0.05 6.73 -51.93 -0.35 -0.40 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 46 H 0.14 1.00 5.84 -52.49 -0.31 0.70 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -35.25 389.10 -8.36 -43.61 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.82 Total: -2.58 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.68 Total: -6.07 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.78 Total: -38.68 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.28 Total: -19.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.25 -8.36 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223485439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.370 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds