Wall clock time and date at job start Tue Mar 31 2020 18:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34705 * 117.00110 * 2 1 4 4 O 1.21474 * 120.00124 * 0.02562 * 3 2 1 5 5 C 1.47744 * 119.99700 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.12017 * 180.02562 * 5 3 2 7 7 C 1.37943 * 119.96084 * 179.97438 * 6 5 3 8 8 C 1.50700 * 119.89791 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46976 * 89.99808 * 8 7 6 10 10 C 1.42906 * 113.99989 * 180.02562 * 9 8 7 11 11 C 1.53507 * 114.16874 * 210.00451 * 10 9 8 12 12 N 1.47489 * 87.92897 * 220.13926 * 11 10 9 13 13 C 1.46904 * 110.99948 * 138.70309 * 12 11 10 14 14 C 1.50696 * 109.46794 * 169.99650 * 13 12 11 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47481 * 87.83412 * 27.01215 * 12 11 10 23 23 C 1.38302 * 120.21356 * 0.25616 * 7 6 5 24 24 C 1.38819 * 120.24528 * 359.48449 * 23 7 6 25 25 O 1.35909 * 119.98491 * 180.25392 * 24 23 7 26 26 C 1.42897 * 117.00225 * 180.25605 * 25 24 23 27 27 C 1.38487 * 120.03613 * 0.51779 * 24 23 7 28 28 H 1.09001 * 109.46831 * 299.99628 * 1 2 3 29 29 H 1.08997 * 109.47411 * 59.99119 * 1 2 3 30 30 H 1.08996 * 109.47376 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.02016 * 359.97438 * 6 5 3 32 32 H 1.09004 * 109.46820 * 330.00288 * 8 7 6 33 33 H 1.09001 * 109.47394 * 210.00384 * 8 7 6 34 34 H 1.08995 * 113.25323 * 342.95576 * 10 9 8 35 35 H 1.08997 * 113.47543 * 105.37735 * 11 10 9 36 36 H 1.08997 * 113.47777 * 334.89811 * 11 10 9 37 37 H 1.09005 * 109.47078 * 49.99935 * 13 12 11 38 38 H 1.09002 * 109.47005 * 290.00151 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08990 * 113.47671 * 87.75950 * 22 12 11 41 41 H 1.09001 * 113.47203 * 218.22506 * 22 12 11 42 42 H 1.07994 * 119.87739 * 179.72199 * 23 7 6 43 43 H 1.08995 * 109.47083 * 60.00737 * 26 25 24 44 44 H 1.09003 * 109.46655 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.47104 * 300.00096 * 26 25 24 46 46 H 1.07997 * 120.10580 * 179.76685 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2774 -0.0006 6 6 4.1757 2.5204 0.0000 7 6 5.5535 2.5886 0.0000 8 6 6.2391 3.9307 0.0000 9 8 6.4557 4.3548 1.3473 10 6 7.1033 5.6237 1.4601 11 6 7.9685 5.7780 2.7187 12 7 7.4632 7.1591 2.8317 13 6 7.1629 7.4970 4.2295 14 6 6.8874 8.9744 4.3409 15 1 6.9307 9.5997 3.4614 16 6 6.5791 9.5277 5.5657 17 7 6.3382 10.8169 5.6629 18 14 6.5036 8.4460 7.0868 19 1 5.1239 7.9231 7.2544 20 1 7.4483 7.3104 6.9340 21 1 6.8788 9.2447 8.2812 22 6 6.2490 6.7133 2.1232 23 6 6.3077 1.4294 -0.0059 24 6 5.6839 0.1893 -0.0011 25 8 6.4303 -0.9465 -0.0017 26 6 5.7227 -2.1879 -0.0022 27 6 4.3014 0.1088 -0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.5898 3.4276 0.0004 32 1 5.6117 4.6591 -0.5139 33 1 7.1969 3.8494 -0.5139 34 1 7.5940 5.9398 0.5396 35 1 9.0387 5.7222 2.5195 36 1 7.6578 5.1335 3.5409 37 1 8.0156 7.2380 4.8572 38 1 6.2867 6.9381 4.5582 39 1 6.1209 11.2060 6.5245 40 1 5.4796 6.3183 2.7864 41 1 5.8620 7.4500 1.4192 42 1 7.3860 1.4892 -0.0104 43 1 5.0964 -2.2487 -0.8922 44 1 6.4356 -3.0125 -0.0022 45 1 5.0964 -2.2495 0.8879 46 1 3.8149 -0.8554 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223485439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:00 Heat of formation + Delta-G solvation = -115.628657 kcal Electronic energy + Delta-G solvation = -27841.857039 eV Core-core repulsion = 23698.096519 eV Total energy + Delta-G solvation = -4143.760520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88528 -41.12731 -40.84169 -38.95378 -37.75025 -37.38296 -34.96423 -33.37824 -31.83476 -31.37320 -28.87177 -28.39262 -27.47795 -26.92475 -26.39516 -25.26994 -23.09607 -22.58167 -21.90721 -20.96649 -19.30430 -19.00361 -18.62197 -18.07692 -17.50550 -17.37073 -17.24873 -17.14338 -16.83731 -16.66407 -16.31233 -16.10753 -15.49233 -15.17867 -14.91818 -14.67905 -14.54223 -14.43503 -14.29130 -13.84563 -13.61788 -13.54298 -13.22021 -13.14583 -12.98457 -12.90010 -12.58871 -12.41655 -12.37752 -12.13864 -12.05848 -11.90594 -11.79606 -11.66131 -11.59219 -11.41361 -10.82624 -10.42049 -10.20306 -9.74353 -9.39764 -8.32494 -6.36632 -0.52903 0.12970 1.31555 1.32118 1.33077 1.44196 1.53363 2.20928 2.30834 2.40122 2.87014 2.99836 3.35845 3.41809 3.45855 3.62859 3.92703 4.00728 4.01493 4.08941 4.18111 4.24367 4.28969 4.30952 4.37600 4.42798 4.44283 4.45513 4.54041 4.62390 4.66937 4.68645 4.68794 4.77507 4.80613 4.86868 4.94753 4.97422 5.08048 5.14366 5.35547 5.42816 5.43217 5.66536 5.93904 6.24111 6.28939 6.50523 6.52863 6.68954 7.26532 8.84488 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.002287 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.147751 B =12242.432300 C =13323.778796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.510 3.490 4 O -0.533 6.533 5 C -0.106 4.106 6 C -0.081 4.081 7 C -0.064 4.064 8 C 0.096 3.904 9 O -0.382 6.382 10 C 0.084 3.916 11 C -0.007 4.007 12 N -0.479 5.479 13 C 0.141 3.859 14 C -0.520 4.520 15 H 0.034 0.966 16 C 0.007 3.993 17 N -0.947 5.947 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.249 1.249 21 H -0.276 1.276 22 C -0.017 4.017 23 C -0.093 4.093 24 C 0.112 3.888 25 O -0.325 6.325 26 C 0.013 3.987 27 C -0.140 4.140 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.030 0.970 38 H -0.002 1.002 39 H 0.268 0.732 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.156 0.844 43 H 0.069 0.931 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 -33.319 -16.215 37.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.357 3.643 4 O -0.424 6.424 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.064 4.064 8 C 0.020 3.980 9 O -0.301 6.301 10 C 0.026 3.974 11 C -0.136 4.136 12 N -0.203 5.203 13 C 0.014 3.986 14 C -0.558 4.558 15 H 0.053 0.947 16 C -0.191 4.191 17 N -0.587 5.587 18 Si 0.772 3.228 19 H -0.193 1.193 20 H -0.173 1.173 21 H -0.202 1.202 22 C -0.147 4.147 23 C -0.112 4.112 24 C 0.066 3.934 25 O -0.238 6.238 26 C -0.081 4.081 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.173 0.827 43 H 0.088 0.912 44 H 0.140 0.860 45 H 0.083 0.917 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.688 -32.479 -16.155 36.577 hybrid contribution -1.328 -0.024 1.168 1.768 sum -6.016 -32.504 -14.988 36.295 Atomic orbital electron populations 1.23634 0.74021 1.06153 1.02678 1.86509 1.25401 1.31264 1.83756 1.21339 0.89312 0.81672 0.72023 1.90854 1.67373 1.37128 1.47000 1.18836 0.88724 0.94738 1.08398 1.21149 0.94444 0.96952 0.97444 1.19348 0.92257 0.94688 1.00114 1.21575 1.00699 0.91654 0.84082 1.88001 1.79417 1.35711 1.26945 1.23705 0.92799 0.82216 0.98718 1.24176 1.01592 0.90292 0.97494 1.68787 1.17016 1.20511 1.13987 1.20474 0.94955 0.95292 0.87927 1.21204 1.46769 0.93094 0.94742 0.94747 1.25905 0.94275 0.96400 1.02500 1.70051 1.49276 1.13053 1.26322 0.85691 0.79553 0.79302 0.78292 1.19314 1.17251 1.20162 1.24364 0.94386 0.97295 0.98618 1.20823 1.01911 0.88764 0.99663 1.18880 0.89510 0.87478 0.97529 1.86105 1.35734 1.13434 1.88572 1.23436 0.99451 0.82662 1.02515 1.21673 0.92611 0.99414 1.02177 0.92143 0.91705 0.84271 0.85104 0.90891 0.88919 0.85480 0.87740 0.91649 0.95179 0.98380 0.92283 0.92397 0.90346 0.82666 0.91221 0.85963 0.91712 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -6.02 9.81 -56.15 -0.55 -6.57 16 3 C 0.51 11.58 7.90 70.34 0.56 12.14 16 4 O -0.53 -15.38 16.13 19.92 0.32 -15.05 16 5 C -0.11 -2.22 5.87 -20.11 -0.12 -2.34 16 6 C -0.08 -1.83 9.24 22.54 0.21 -1.62 16 7 C -0.06 -1.28 5.50 -19.92 -0.11 -1.39 16 8 C 0.10 1.84 5.90 71.24 0.42 2.26 16 9 O -0.38 -10.17 10.38 -148.98 -1.55 -11.72 16 10 C 0.08 2.36 4.65 30.94 0.14 2.50 16 11 C -0.01 -0.22 7.52 83.57 0.63 0.41 16 12 N -0.48 -20.58 6.32 -932.93 -5.89 -26.48 16 13 C 0.14 7.10 3.64 85.55 0.31 7.41 16 14 C -0.52 -31.58 9.94 25.60 0.25 -31.32 16 15 H 0.03 2.33 8.06 -2.91 -0.02 2.31 16 16 C 0.01 0.40 5.47 84.66 0.46 0.86 16 17 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 18 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.25 -11.09 6.54 99.48 0.65 -10.43 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 C -0.02 -0.64 7.56 83.58 0.63 -0.01 16 23 C -0.09 -1.64 9.63 22.42 0.22 -1.43 16 24 C 0.11 1.89 6.68 22.47 0.15 2.04 16 25 O -0.32 -4.80 10.49 -92.52 -0.97 -5.77 16 26 C 0.01 0.09 9.81 113.37 1.11 1.20 16 27 C -0.14 -2.29 8.60 22.64 0.19 -2.10 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.13 3.17 7.65 -2.91 -0.02 3.15 16 32 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 33 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.13 2.87 7.88 -2.39 -0.02 2.85 16 35 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 37 H 0.03 1.49 7.14 -2.38 -0.02 1.47 16 38 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16 39 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.06 2.31 7.42 -2.39 -0.02 2.29 16 41 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 44 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.06 0.37 7.66 -2.38 -0.02 0.35 16 46 H 0.16 1.88 5.84 -2.91 -0.02 1.86 16 Total: -1.00 -78.90 389.10 0.73 -78.16 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.93 Total: 10.54 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 6.26 Total: -9.87 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -5.59 Total: -87.02 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -2.75 Total: -39.11 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -78.90 0.73 -78.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223485439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.464 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds