Wall clock time and date at job start Tue Mar 31 2020 18:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00205 * 2 1 4 4 O 1.20828 * 119.99779 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00007 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47063 * 304.99900 * 5 3 2 7 7 O 1.42899 * 109.46866 * 184.99854 * 5 3 2 8 8 C 1.42906 * 114.00138 * 90.00146 * 7 5 3 9 9 H 1.09002 * 110.63559 * 29.29750 * 8 7 5 10 10 C 1.55154 * 110.72087 * 152.43722 * 8 7 5 11 11 C 1.55123 * 101.48128 * 153.73528 * 10 8 7 12 12 N 1.47422 * 104.94700 * 323.22302 * 11 10 8 13 13 C 1.36932 * 125.65125 * 203.96742 * 12 11 10 14 14 H 1.07999 * 120.00503 * 180.02562 * 13 12 11 15 15 C 1.38815 * 119.99919 * 0.04261 * 13 12 11 16 16 N 1.31617 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99863 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47084 * 90.00198 * 17 15 13 19 19 H 1.48507 * 109.47193 * 210.00015 * 17 15 13 20 20 H 1.48498 * 109.47360 * 329.99792 * 17 15 13 21 21 C 1.47028 * 108.70117 * 24.00296 * 12 11 10 22 22 C 1.50703 * 109.46965 * 65.00337 * 5 3 2 23 23 C 1.38159 * 120.02931 * 94.97836 * 22 5 3 24 24 C 1.38246 * 120.05555 * 180.02562 * 23 22 5 25 25 C 1.38283 * 120.11013 * 359.97438 * 24 23 22 26 26 C 1.38130 * 120.05595 * 359.76602 * 25 24 23 27 27 C 1.38711 * 120.02496 * 274.99447 * 22 5 3 28 28 O 1.35905 * 120.05327 * 359.97438 * 27 22 5 29 29 C 1.42901 * 116.99604 * 179.97438 * 28 27 22 30 30 H 1.09001 * 109.46823 * 299.99824 * 1 2 3 31 31 H 1.09005 * 109.47205 * 59.99566 * 1 2 3 32 32 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.08999 * 111.00687 * 271.93826 * 10 8 7 34 34 H 1.08997 * 111.00287 * 35.79636 * 10 8 7 35 35 H 1.09004 * 110.41983 * 204.29545 * 11 10 8 36 36 H 1.09005 * 110.30147 * 82.09222 * 11 10 8 37 37 H 0.96996 * 120.00334 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.87965 * 239.52352 * 21 12 11 39 39 H 1.09001 * 109.87916 * 118.35666 * 21 12 11 40 40 H 1.08008 * 119.97519 * 0.04136 * 23 22 5 41 41 H 1.08001 * 119.94258 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.97266 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.02656 * 180.27877 * 26 25 24 44 44 H 1.08999 * 109.47144 * 59.99795 * 29 28 27 45 45 H 1.08995 * 109.47253 * 179.97438 * 29 28 27 46 46 H 1.08996 * 109.47352 * 299.99771 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9603 0.7050 0.8409 7 8 3.9718 2.6400 0.1169 8 6 4.1433 3.0815 1.4652 9 1 4.4392 2.2513 2.1066 10 6 5.1839 4.2300 1.5387 11 6 4.7281 4.9781 2.8189 12 7 3.2559 4.9053 2.7981 13 6 2.4048 5.7743 3.4271 14 1 1.3367 5.6342 3.3511 15 6 2.9150 6.8356 4.1621 16 7 4.2168 7.0064 4.2548 17 14 1.7540 8.0215 5.0195 18 1 1.4703 7.5311 6.3921 19 1 2.3841 9.3643 5.0939 20 1 0.4848 8.1122 4.2540 21 6 2.8526 3.7444 1.9909 22 6 4.0989 0.7018 -1.2887 23 6 4.3835 1.5372 -2.3516 24 6 4.8715 1.0120 -3.5337 25 6 5.0765 -0.3501 -3.6552 26 6 4.7986 -1.1890 -2.5936 27 6 4.3033 -0.6650 -1.4082 28 8 4.0243 -1.4888 -0.3639 29 6 4.2587 -2.8849 -0.5584 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 6.1937 3.8356 1.6518 34 1 5.1143 4.8767 0.6641 35 1 5.0570 6.0170 2.7897 36 1 5.1200 4.4817 3.7068 37 1 4.5733 7.7478 4.7687 38 1 2.2362 4.0714 1.1535 39 1 2.2981 3.0380 2.6086 40 1 4.2248 2.6015 -2.2590 41 1 5.0929 1.6667 -4.3636 42 1 5.4582 -0.7580 -4.5796 43 1 4.9631 -2.2522 -2.6875 44 1 5.3119 -3.0482 -0.7870 45 1 3.9961 -3.4275 0.3497 46 1 3.6474 -3.2441 -1.3863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223486735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:03 Heat of formation + Delta-G solvation = -97.090705 kcal Electronic energy + Delta-G solvation = -30020.900061 eV Core-core repulsion = 25877.943407 eV Total energy + Delta-G solvation = -4142.956654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87349 -39.94971 -38.40530 -37.50782 -36.34087 -35.70835 -32.71040 -31.72387 -30.32785 -29.16069 -28.45744 -27.56950 -27.03183 -26.26839 -24.28093 -22.42832 -22.28611 -20.84676 -20.24500 -19.99200 -18.34039 -17.64608 -17.24371 -16.99183 -16.55558 -16.20985 -15.98414 -15.83604 -15.25304 -14.65190 -14.61284 -14.40445 -14.13857 -13.78614 -13.73574 -13.35342 -13.02463 -12.82041 -12.42441 -12.35822 -12.20470 -12.09706 -11.90297 -11.67469 -11.54709 -11.31725 -11.16161 -11.03780 -10.91185 -10.72949 -10.66292 -10.35918 -10.26436 -10.05712 -9.69231 -9.50554 -9.30082 -9.00587 -8.58186 -8.34620 -6.74878 -5.58305 -2.98971 1.05982 1.27268 2.35380 2.69080 3.06277 3.45591 3.49926 3.51419 3.53584 3.82476 4.48316 4.56706 4.68036 4.77522 4.86592 4.90871 4.95974 5.07780 5.12689 5.13440 5.21826 5.25366 5.26471 5.39456 5.49880 5.53797 5.56873 5.57552 5.77670 5.78079 5.89256 6.06339 6.19496 6.33471 6.39195 6.45662 6.57456 6.62882 6.63272 6.70799 6.93583 7.15953 7.48635 7.54620 7.70990 7.90551 7.95247 8.42627 9.29753 9.90266 10.55048 11.46236 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003105 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.270792 B = 9015.431996 C = 9699.215776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.438 3.562 4 O -0.476 6.476 5 C 0.155 3.845 6 H 0.107 0.893 7 O -0.338 6.338 8 C 0.069 3.931 9 H 0.066 0.934 10 C -0.135 4.135 11 C 0.153 3.847 12 N -0.603 5.603 13 C -0.216 4.216 14 H 0.077 0.923 15 C -0.014 4.014 16 N -0.925 5.925 17 Si 0.915 3.085 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.120 3.880 22 C -0.124 4.124 23 C -0.044 4.044 24 C -0.162 4.162 25 C -0.073 4.073 26 C -0.215 4.215 27 C 0.151 3.849 28 O -0.305 6.305 29 C 0.029 3.971 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.013 0.987 37 H 0.251 0.749 38 H 0.051 0.949 39 H 0.014 0.986 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.054 0.946 45 H 0.100 0.900 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 -21.856 -14.855 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.278 3.722 4 O -0.360 6.360 5 C 0.095 3.905 6 H 0.125 0.875 7 O -0.255 6.255 8 C 0.011 3.989 9 H 0.084 0.916 10 C -0.174 4.174 11 C 0.028 3.972 12 N -0.330 5.330 13 C -0.344 4.344 14 H 0.095 0.905 15 C -0.209 4.209 16 N -0.574 5.574 17 Si 0.746 3.254 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.006 4.006 22 C -0.125 4.125 23 C -0.062 4.062 24 C -0.181 4.181 25 C -0.091 4.091 26 C -0.234 4.234 27 C 0.105 3.895 28 O -0.218 6.218 29 C -0.066 4.066 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.031 0.969 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.607 -21.192 -14.684 25.832 hybrid contribution -0.846 0.148 0.573 1.032 sum 0.761 -21.044 -14.110 25.348 Atomic orbital electron populations 1.23217 0.77022 1.03159 1.02542 1.86555 1.22721 1.33285 1.84246 1.24450 0.92543 0.81805 0.73357 1.90727 1.66319 1.35997 1.42973 1.19956 0.86341 0.86452 0.97728 0.87541 1.88038 1.85972 1.23245 1.28284 1.23583 0.97833 0.96796 0.80645 0.91615 1.23196 0.96071 0.96014 1.02071 1.22002 0.83423 1.01719 0.90076 1.44402 1.02305 1.27967 1.58337 1.19103 0.88928 1.03425 1.22979 0.90511 1.24773 0.96132 0.99091 1.00858 1.69764 1.09734 1.32327 1.45622 0.86055 0.79625 0.80379 0.79378 1.21718 1.21652 1.20698 1.21751 0.94063 0.90017 0.94771 1.18669 1.07752 0.90319 0.95724 1.21008 0.93771 1.00563 0.90865 1.21090 1.03431 0.95285 0.98247 1.20993 0.96870 0.93467 0.97807 1.21132 1.07901 1.00567 0.93775 1.18680 0.94265 0.89341 0.87183 1.86145 1.81392 1.18188 1.36069 1.23055 1.00829 0.79270 1.03483 0.91869 0.92190 0.88483 0.91764 0.90907 0.87067 0.96888 0.93776 0.93132 0.96804 0.84024 0.85537 0.85744 0.85237 0.92734 0.88157 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.35 -5.02 10.34 -39.35 -0.41 -5.43 16 3 C 0.44 7.34 7.12 36.01 0.26 7.60 16 4 O -0.48 -9.47 14.05 -25.46 -0.36 -9.83 16 5 C 0.16 2.43 2.57 -29.03 -0.07 2.36 16 6 H 0.11 1.56 6.95 -51.93 -0.36 1.20 16 7 O -0.34 -6.12 8.15 -55.13 -0.45 -6.57 16 8 C 0.07 1.36 3.39 -24.90 -0.08 1.27 16 9 H 0.07 1.19 7.43 -51.93 -0.39 0.80 16 10 C -0.13 -2.75 6.83 -24.47 -0.17 -2.92 16 11 C 0.15 3.88 5.89 -2.41 -0.01 3.86 16 12 N -0.60 -16.64 3.40 -169.93 -0.58 -17.22 16 13 C -0.22 -6.39 10.27 -15.06 -0.15 -6.55 16 14 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 15 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 16 N -0.93 -27.71 10.09 55.49 0.56 -27.15 16 17 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.12 2.87 5.93 -3.06 -0.02 2.85 16 22 C -0.12 -1.69 5.05 -104.48 -0.53 -2.22 16 23 C -0.04 -0.57 9.35 -39.61 -0.37 -0.94 16 24 C -0.16 -1.67 10.04 -39.56 -0.40 -2.07 16 25 C -0.07 -0.66 10.04 -39.60 -0.40 -1.06 16 26 C -0.22 -2.03 9.04 -39.43 -0.36 -2.39 16 27 C 0.15 1.78 6.66 -39.22 -0.26 1.51 16 28 O -0.31 -3.36 9.42 -19.44 -0.18 -3.54 16 29 C 0.03 0.19 9.81 101.05 0.99 1.18 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.11 3.13 5.87 -51.93 -0.31 2.82 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.05 1.30 6.86 -51.93 -0.36 0.94 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.14 1.93 7.35 -52.48 -0.39 1.54 16 41 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 44 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.30 7.68 -51.93 -0.40 -0.10 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -34.85 377.80 -8.04 -42.89 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.69 Total: -0.20 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.60 Total: 3.47 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.02 Total: -44.37 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -1.40 Total: -25.37 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.85 -8.04 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223486735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.202 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds