Wall clock time and date at job start Tue Mar 31 2020 18:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00205 * 2 1 4 4 O 1.20828 * 119.99779 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00007 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47063 * 304.99900 * 5 3 2 7 7 O 1.42899 * 109.46866 * 184.99854 * 5 3 2 8 8 C 1.42906 * 114.00138 * 90.00146 * 7 5 3 9 9 H 1.09002 * 110.63559 * 29.29750 * 8 7 5 10 10 C 1.55154 * 110.72087 * 152.43722 * 8 7 5 11 11 C 1.55123 * 101.48128 * 153.73528 * 10 8 7 12 12 N 1.47422 * 104.94700 * 323.22302 * 11 10 8 13 13 C 1.36932 * 125.65125 * 203.96742 * 12 11 10 14 14 H 1.07999 * 120.00503 * 180.02562 * 13 12 11 15 15 C 1.38815 * 119.99919 * 0.04261 * 13 12 11 16 16 N 1.31617 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99863 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47084 * 90.00198 * 17 15 13 19 19 H 1.48507 * 109.47193 * 210.00015 * 17 15 13 20 20 H 1.48498 * 109.47360 * 329.99792 * 17 15 13 21 21 C 1.47028 * 108.70117 * 24.00296 * 12 11 10 22 22 C 1.50703 * 109.46965 * 65.00337 * 5 3 2 23 23 C 1.38159 * 120.02931 * 94.97836 * 22 5 3 24 24 C 1.38246 * 120.05555 * 180.02562 * 23 22 5 25 25 C 1.38283 * 120.11013 * 359.97438 * 24 23 22 26 26 C 1.38130 * 120.05595 * 359.76602 * 25 24 23 27 27 C 1.38711 * 120.02496 * 274.99447 * 22 5 3 28 28 O 1.35905 * 120.05327 * 359.97438 * 27 22 5 29 29 C 1.42901 * 116.99604 * 179.97438 * 28 27 22 30 30 H 1.09001 * 109.46823 * 299.99824 * 1 2 3 31 31 H 1.09005 * 109.47205 * 59.99566 * 1 2 3 32 32 H 1.09001 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.08999 * 111.00687 * 271.93826 * 10 8 7 34 34 H 1.08997 * 111.00287 * 35.79636 * 10 8 7 35 35 H 1.09004 * 110.41983 * 204.29545 * 11 10 8 36 36 H 1.09005 * 110.30147 * 82.09222 * 11 10 8 37 37 H 0.96996 * 120.00334 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.87965 * 239.52352 * 21 12 11 39 39 H 1.09001 * 109.87916 * 118.35666 * 21 12 11 40 40 H 1.08008 * 119.97519 * 0.04136 * 23 22 5 41 41 H 1.08001 * 119.94258 * 179.97438 * 24 23 22 42 42 H 1.08007 * 119.97266 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.02656 * 180.27877 * 26 25 24 44 44 H 1.08999 * 109.47144 * 59.99795 * 29 28 27 45 45 H 1.08995 * 109.47253 * 179.97438 * 29 28 27 46 46 H 1.08996 * 109.47352 * 299.99771 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9603 0.7050 0.8409 7 8 3.9718 2.6400 0.1169 8 6 4.1433 3.0815 1.4652 9 1 4.4392 2.2513 2.1066 10 6 5.1839 4.2300 1.5387 11 6 4.7281 4.9781 2.8189 12 7 3.2559 4.9053 2.7981 13 6 2.4048 5.7743 3.4271 14 1 1.3367 5.6342 3.3511 15 6 2.9150 6.8356 4.1621 16 7 4.2168 7.0064 4.2548 17 14 1.7540 8.0215 5.0195 18 1 1.4703 7.5311 6.3921 19 1 2.3841 9.3643 5.0939 20 1 0.4848 8.1122 4.2540 21 6 2.8526 3.7444 1.9909 22 6 4.0989 0.7018 -1.2887 23 6 4.3835 1.5372 -2.3516 24 6 4.8715 1.0120 -3.5337 25 6 5.0765 -0.3501 -3.6552 26 6 4.7986 -1.1890 -2.5936 27 6 4.3033 -0.6650 -1.4082 28 8 4.0243 -1.4888 -0.3639 29 6 4.2587 -2.8849 -0.5584 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 6.1937 3.8356 1.6518 34 1 5.1143 4.8767 0.6641 35 1 5.0570 6.0170 2.7897 36 1 5.1200 4.4817 3.7068 37 1 4.5733 7.7478 4.7687 38 1 2.2362 4.0714 1.1535 39 1 2.2981 3.0380 2.6086 40 1 4.2248 2.6015 -2.2590 41 1 5.0929 1.6667 -4.3636 42 1 5.4582 -0.7580 -4.5796 43 1 4.9631 -2.2522 -2.6875 44 1 5.3119 -3.0482 -0.7870 45 1 3.9961 -3.4275 0.3497 46 1 3.6474 -3.2441 -1.3863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223486735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:02 Heat of formation + Delta-G solvation = -118.323970 kcal Electronic energy + Delta-G solvation = -30021.820805 eV Core-core repulsion = 25877.943407 eV Total energy + Delta-G solvation = -4143.877398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99044 -40.90325 -39.90978 -38.41034 -37.79438 -37.18785 -34.43506 -33.14508 -31.10742 -31.09105 -29.49843 -28.92772 -28.08599 -27.39909 -26.32301 -23.39116 -23.11236 -22.27031 -21.94637 -21.67941 -19.28138 -18.98903 -18.79771 -18.50964 -17.79081 -17.25159 -16.96908 -16.79283 -16.52856 -16.33348 -16.13722 -15.49520 -15.34244 -15.08108 -14.85893 -14.48561 -14.37403 -14.27655 -13.80723 -13.65974 -13.56249 -13.41864 -13.15990 -12.95578 -12.86810 -12.77905 -12.67483 -12.33062 -12.15181 -12.04278 -11.94020 -11.88077 -11.84599 -11.77799 -11.68341 -11.39158 -10.82540 -10.77210 -9.88315 -9.13803 -8.94441 -7.81390 -5.26652 0.22014 0.48025 1.07797 1.43686 1.46540 1.53533 1.55996 2.35433 2.39958 2.50004 2.82356 3.28263 3.49441 3.64063 3.70844 3.84947 3.86055 3.98395 4.01684 4.07798 4.11366 4.26614 4.27492 4.33442 4.49043 4.50902 4.51592 4.60636 4.63177 4.68691 4.74651 4.84934 4.88574 4.96678 4.98543 5.01171 5.28322 5.31342 5.39811 5.44692 5.56368 5.58294 5.73703 5.84598 5.98908 6.26512 6.46019 6.69056 7.07018 7.71681 8.35792 9.20758 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003105 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.270792 B = 9015.431996 C = 9699.215776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.439 3.561 4 O -0.519 6.519 5 C 0.154 3.846 6 H 0.117 0.883 7 O -0.344 6.344 8 C 0.084 3.916 9 H 0.089 0.911 10 C -0.119 4.119 11 C 0.155 3.845 12 N -0.625 5.625 13 C -0.246 4.246 14 H 0.071 0.929 15 C -0.062 4.062 16 N -0.946 5.946 17 Si 0.984 3.016 18 H -0.283 1.283 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.124 3.876 22 C -0.150 4.150 23 C -0.065 4.065 24 C -0.166 4.166 25 C -0.064 4.064 26 C -0.210 4.210 27 C 0.147 3.853 28 O -0.326 6.326 29 C 0.019 3.981 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.000 1.000 37 H 0.251 0.749 38 H 0.027 0.973 39 H 0.007 0.993 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.575 -24.504 -16.223 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.282 3.718 4 O -0.407 6.407 5 C 0.094 3.906 6 H 0.134 0.866 7 O -0.261 6.261 8 C 0.026 3.974 9 H 0.107 0.893 10 C -0.157 4.157 11 C 0.030 3.970 12 N -0.352 5.352 13 C -0.375 4.375 14 H 0.089 0.911 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.811 3.189 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.002 4.002 22 C -0.151 4.151 23 C -0.083 4.083 24 C -0.184 4.184 25 C -0.082 4.082 26 C -0.228 4.228 27 C 0.100 3.900 28 O -0.239 6.239 29 C -0.075 4.075 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.288 -23.891 -16.069 28.883 hybrid contribution -1.103 0.826 0.938 1.667 sum 1.185 -23.065 -15.131 27.611 Atomic orbital electron populations 1.23527 0.75306 1.05674 1.02028 1.86545 1.24375 1.31826 1.83512 1.24769 0.93137 0.81811 0.72091 1.90712 1.67320 1.37398 1.45254 1.20139 0.85734 0.85005 0.99693 0.86595 1.88024 1.86026 1.25262 1.26781 1.23320 0.95046 0.97083 0.81936 0.89328 1.23009 0.98019 0.95649 0.99037 1.21824 0.82516 1.00598 0.92065 1.44710 1.03178 1.28799 1.58536 1.19389 0.89260 1.04721 1.24145 0.91120 1.25646 0.97922 1.00481 1.01405 1.69999 1.11166 1.32591 1.45725 0.85005 0.77748 0.77872 0.78225 1.20930 1.21200 1.19967 1.21754 0.95990 0.89051 0.93368 1.18613 1.09974 0.91608 0.94879 1.20972 0.95452 0.99725 0.92170 1.21338 1.02790 0.96561 0.97668 1.21429 0.95155 0.92666 0.98954 1.21517 1.06389 1.02240 0.92703 1.18763 0.94265 0.88700 0.88232 1.86115 1.81449 1.20094 1.36278 1.23363 1.02163 0.77126 1.04878 0.92837 0.92357 0.84384 0.88027 0.91450 0.90039 0.98217 0.93943 0.95529 0.97554 0.86098 0.83706 0.82198 0.82142 0.91224 0.86861 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.35 -9.79 10.34 -51.34 -0.53 -10.32 16 3 C 0.44 15.08 7.12 71.24 0.51 15.59 16 4 O -0.52 -21.70 14.05 28.38 0.40 -21.31 16 5 C 0.15 4.85 2.57 29.10 0.07 4.92 16 6 H 0.12 3.36 6.95 -2.39 -0.02 3.34 16 7 O -0.34 -12.69 8.15 -129.95 -1.06 -13.75 16 8 C 0.08 3.35 3.39 31.78 0.11 3.46 16 9 H 0.09 3.13 7.43 -2.39 -0.02 3.11 16 10 C -0.12 -4.85 6.83 32.06 0.22 -4.63 16 11 C 0.15 8.09 5.89 86.93 0.51 8.61 16 12 N -0.62 -35.83 3.40 -691.54 -2.35 -38.18 16 13 C -0.25 -15.11 10.27 84.04 0.86 -14.24 16 14 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 15 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 16 N -0.95 -57.99 10.09 21.65 0.22 -57.77 16 17 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 21 C 0.12 6.18 5.93 86.73 0.51 6.69 16 22 C -0.15 -4.02 5.05 -19.77 -0.10 -4.12 16 23 C -0.07 -1.66 9.35 22.25 0.21 -1.46 16 24 C -0.17 -3.09 10.04 22.28 0.22 -2.86 16 25 C -0.06 -0.92 10.04 22.25 0.22 -0.70 16 26 C -0.21 -3.22 9.04 22.37 0.20 -3.02 16 27 C 0.15 3.15 6.66 22.50 0.15 3.30 16 28 O -0.33 -6.49 9.42 -92.48 -0.87 -7.36 16 29 C 0.02 0.19 9.81 113.37 1.11 1.30 16 30 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 32 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.08 4.76 5.87 -2.38 -0.01 4.75 16 36 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.03 1.45 6.86 -2.39 -0.02 1.43 16 39 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.12 3.48 7.35 -2.91 -0.02 3.46 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 44 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.50 7.68 -2.39 -0.02 0.48 16 Total: -1.00 -79.09 377.80 5.30 -73.79 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.98 Total: 13.59 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.48 Total: 11.43 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -2.13 Total: -95.96 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -2.06 Total: -52.73 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -79.09 5.30 -73.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223486735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.537 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds