Wall clock time and date at job start Tue Mar 31 2020 18:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99946 * 2 1 4 4 O 1.20824 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99871 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.46724 * 60.00041 * 5 3 2 7 7 O 1.42898 * 109.46913 * 179.97438 * 5 3 2 8 8 C 1.42899 * 114.00051 * 269.99850 * 7 5 3 9 9 H 1.09000 * 110.64475 * 26.86307 * 8 7 5 10 10 C 1.55154 * 110.71901 * 150.00278 * 8 7 5 11 11 C 1.54913 * 101.58290 * 154.04516 * 10 8 7 12 12 N 1.47424 * 104.82792 * 322.99021 * 11 10 8 13 13 C 1.36938 * 125.64355 * 203.86074 * 12 11 10 14 14 H 1.07997 * 119.99870 * 161.52651 * 13 12 11 15 15 C 1.38813 * 120.00393 * 341.52649 * 13 12 11 16 16 N 1.31613 * 120.00026 * 157.52879 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.53315 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47016 * 108.70430 * 24.12932 * 12 11 10 22 22 C 1.50692 * 109.47308 * 300.00293 * 5 3 2 23 23 C 1.38265 * 119.94425 * 279.73198 * 22 5 3 24 24 C 1.38142 * 120.05786 * 179.72803 * 23 22 5 25 25 C 1.38739 * 119.94295 * 0.51559 * 24 23 22 26 26 O 1.35898 * 120.05559 * 179.72912 * 25 24 23 27 27 C 1.42904 * 117.00253 * 0.02562 * 26 25 24 28 28 C 1.38735 * 119.88687 * 359.75248 * 25 24 23 29 29 C 1.38140 * 119.94128 * 0.02562 * 28 25 24 30 30 H 1.09000 * 109.46965 * 299.99860 * 1 2 3 31 31 H 1.09006 * 109.47158 * 59.99743 * 1 2 3 32 32 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08998 * 111.00742 * 35.96691 * 10 8 7 34 34 H 1.09006 * 111.00517 * 272.11829 * 10 8 7 35 35 H 1.08997 * 110.36402 * 204.15447 * 11 10 8 36 36 H 1.08994 * 110.46036 * 81.87918 * 11 10 8 37 37 H 0.97008 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.88017 * 118.35603 * 21 12 11 39 39 H 1.09000 * 109.87989 * 239.51674 * 21 12 11 40 40 H 1.07996 * 119.96856 * 359.96762 * 23 22 5 41 41 H 1.08000 * 120.03333 * 180.28986 * 24 23 22 42 42 H 1.08998 * 109.47001 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.46760 * 300.00194 * 27 26 25 44 44 H 1.08999 * 109.46818 * 60.00010 * 27 26 25 45 45 H 1.07996 * 120.02775 * 180.02562 * 28 25 24 46 46 H 1.08004 * 119.97003 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8909 7 8 3.9715 2.6452 -0.0011 8 6 4.1358 3.2022 -1.3067 9 1 3.5022 2.6855 -2.0275 10 6 3.8289 4.7231 -1.2972 11 6 4.6749 5.2186 -2.4966 12 7 5.9044 4.4064 -2.4522 13 6 7.1143 4.7604 -2.9870 14 1 8.0154 4.2626 -2.6605 15 6 7.1827 5.7589 -3.9489 16 7 8.3110 6.4074 -4.1452 17 14 5.6732 6.1821 -4.9647 18 1 4.8266 7.1451 -4.2156 19 1 6.0970 6.7917 -6.2507 20 1 4.8961 4.9459 -5.2351 21 6 5.6148 3.1509 -1.7443 22 6 4.1057 0.5914 1.2294 23 6 4.1105 1.2558 2.4420 24 6 4.5992 0.6295 3.5721 25 6 5.0953 -0.6634 3.4876 26 8 5.5816 -1.2797 4.5969 27 6 5.5510 -0.5373 5.8176 28 6 5.0944 -1.3259 2.2686 29 6 4.6004 -0.6968 1.1424 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1624 5.1833 -0.3672 34 1 2.7678 4.9086 -1.4644 35 1 4.9141 6.2757 -2.3810 36 1 4.1430 5.0510 -3.4331 37 1 8.3586 7.1054 -4.8171 38 1 5.7748 2.3039 -2.4114 39 1 6.2577 3.0623 -0.8686 40 1 3.7284 2.2638 2.5063 41 1 4.5985 1.1471 4.5200 42 1 5.9668 -1.1439 6.6222 43 1 6.1417 0.3718 5.7048 44 1 4.5207 -0.2739 6.0569 45 1 5.4796 -2.3325 2.2003 46 1 4.5999 -1.2119 0.1931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223564496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:17 Heat of formation + Delta-G solvation = -98.545566 kcal Electronic energy + Delta-G solvation = -29306.234190 eV Core-core repulsion = 25163.214448 eV Total energy + Delta-G solvation = -4143.019742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94838 -40.17690 -38.79435 -37.74497 -36.71087 -35.90378 -32.51404 -31.61506 -31.29347 -29.57933 -28.64795 -27.97300 -27.57969 -26.12181 -24.12799 -22.91715 -22.23451 -21.12623 -20.89518 -20.16446 -18.44192 -17.92871 -17.28187 -17.20444 -16.71709 -16.56923 -16.15874 -15.99627 -15.48398 -15.22562 -14.72424 -14.44077 -14.12624 -13.83424 -13.69186 -13.46946 -13.33637 -13.29117 -12.90753 -12.58085 -12.41349 -12.28083 -12.23649 -12.04907 -11.93096 -11.52408 -11.43631 -11.29742 -11.05199 -11.00762 -10.96608 -10.65707 -10.58476 -10.07496 -9.97182 -9.51829 -9.39498 -9.18354 -8.66397 -8.38056 -7.04254 -5.93424 -3.24051 1.07803 1.18809 2.03249 2.42124 2.99389 3.36182 3.38384 3.48964 3.51107 3.75384 4.43356 4.55948 4.57153 4.63758 4.67846 4.78969 4.84777 4.87378 4.89580 4.96225 4.98420 5.13993 5.17618 5.19131 5.26623 5.29552 5.33632 5.40078 5.44354 5.49942 5.83037 5.88295 5.97323 6.06806 6.14004 6.17009 6.29909 6.33590 6.43181 6.49286 6.52351 6.61463 6.77149 7.11736 7.20322 7.62706 7.71164 8.32365 8.84061 9.69608 10.17492 11.22650 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003168 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.404424 B = 8837.592302 C =10359.546541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.440 3.560 4 O -0.487 6.487 5 C 0.149 3.851 6 H 0.110 0.890 7 O -0.333 6.333 8 C 0.072 3.928 9 H 0.068 0.932 10 C -0.121 4.121 11 C 0.110 3.890 12 N -0.606 5.606 13 C -0.241 4.241 14 H 0.093 0.907 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.882 3.118 18 H -0.284 1.284 19 H -0.302 1.302 20 H -0.277 1.277 21 C 0.118 3.882 22 C -0.125 4.125 23 C -0.043 4.043 24 C -0.211 4.211 25 C 0.134 3.866 26 O -0.318 6.318 27 C 0.026 3.974 28 C -0.154 4.154 29 C -0.051 4.051 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.134 0.866 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -17.405 16.306 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.281 3.719 4 O -0.372 6.372 5 C 0.089 3.911 6 H 0.127 0.873 7 O -0.250 6.250 8 C 0.015 3.985 9 H 0.086 0.914 10 C -0.159 4.159 11 C -0.015 4.015 12 N -0.334 5.334 13 C -0.368 4.368 14 H 0.111 0.889 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.712 3.288 18 H -0.211 1.211 19 H -0.230 1.230 20 H -0.203 1.203 21 C -0.008 4.008 22 C -0.126 4.126 23 C -0.061 4.061 24 C -0.230 4.230 25 C 0.089 3.911 26 O -0.231 6.231 27 C -0.069 4.069 28 C -0.172 4.172 29 C -0.069 4.069 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.118 0.882 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.152 0.848 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.304 -17.037 16.380 27.121 hybrid contribution -1.175 0.544 -0.823 1.535 sum -14.479 -16.493 15.557 26.901 Atomic orbital electron populations 1.23258 0.76524 1.03590 1.02526 1.86519 1.23237 1.33348 1.84089 1.24632 0.92684 0.81743 0.72842 1.90687 1.66531 1.36248 1.43772 1.20201 0.85732 0.86239 0.98943 0.87278 1.88094 1.86051 1.21843 1.29062 1.23403 0.97156 0.95339 0.82625 0.91393 1.22822 0.99766 0.92985 1.00366 1.21989 0.87796 0.96984 0.94689 1.44663 1.07728 1.14565 1.66404 1.18641 0.82956 1.18434 1.16759 0.88949 1.24987 0.96302 0.97743 0.98599 1.69844 1.26183 1.23695 1.35428 0.86989 0.83551 0.78010 0.80252 1.21084 1.22979 1.20321 1.21759 0.92742 0.89998 0.96276 1.19124 1.05071 0.95102 0.93307 1.20837 0.94970 0.99385 0.90892 1.21222 1.06577 0.95101 1.00080 1.19114 0.93494 0.91407 0.87064 1.86064 1.78240 1.42799 1.16007 1.23076 1.01892 0.97513 0.84392 1.20334 1.05688 1.01303 0.89883 1.20762 0.94655 0.93161 0.98369 0.91986 0.91913 0.88099 0.89974 0.90984 0.91724 0.95598 0.92683 0.94996 0.93502 0.84944 0.85226 0.88235 0.92379 0.92617 0.84771 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.06 10.48 -39.25 -0.41 -4.47 16 3 C 0.44 5.98 7.27 36.01 0.26 6.25 16 4 O -0.49 -7.94 16.22 -25.48 -0.41 -8.36 16 5 C 0.15 1.95 2.67 -29.04 -0.08 1.87 16 6 H 0.11 1.23 7.64 -51.93 -0.40 0.83 16 7 O -0.33 -5.32 8.58 -55.18 -0.47 -5.80 16 8 C 0.07 1.26 3.20 -24.90 -0.08 1.18 16 9 H 0.07 1.11 7.80 -51.93 -0.41 0.70 16 10 C -0.12 -2.23 6.81 -24.58 -0.17 -2.40 16 11 C 0.11 2.48 4.70 -2.53 -0.01 2.47 16 12 N -0.61 -15.06 3.21 -170.08 -0.55 -15.60 16 13 C -0.24 -6.96 10.57 -15.06 -0.16 -7.12 16 14 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 15 C 0.02 0.66 5.43 -17.43 -0.09 0.56 16 16 N -0.91 -28.28 13.97 55.49 0.78 -27.51 16 17 Si 0.88 22.83 24.27 -169.99 -4.13 18.70 16 18 H -0.28 -7.07 6.49 56.52 0.37 -6.70 16 19 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 20 H -0.28 -7.06 6.66 56.52 0.38 -6.69 16 21 C 0.12 2.41 7.02 -3.07 -0.02 2.38 16 22 C -0.13 -1.51 4.90 -104.61 -0.51 -2.02 16 23 C -0.04 -0.52 9.35 -39.61 -0.37 -0.89 16 24 C -0.21 -2.25 9.04 -39.43 -0.36 -2.60 16 25 C 0.13 1.45 6.69 -39.21 -0.26 1.19 16 26 O -0.32 -3.17 10.50 -19.42 -0.20 -3.37 16 27 C 0.03 0.17 9.81 101.05 0.99 1.16 16 28 C -0.15 -1.56 9.99 -39.43 -0.39 -1.96 16 29 C -0.05 -0.53 9.66 -39.61 -0.38 -0.91 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.53 6.66 -51.93 -0.35 1.19 16 36 H 0.03 0.60 5.55 -51.93 -0.29 0.31 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.13 1.65 7.77 -52.49 -0.41 1.24 16 41 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 44 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.14 1.07 8.03 -52.48 -0.42 0.65 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -34.92 379.67 -7.05 -41.97 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.81 Total: -1.82 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.57 Total: 0.53 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.23 Total: -43.11 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.50 Total: -22.00 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.13 Total: 18.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.92 -7.05 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223564496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.571 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds