Wall clock time and date at job start Tue Mar 31 2020 18:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99946 * 2 1 4 4 O 1.20824 * 120.00026 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99871 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.46724 * 60.00041 * 5 3 2 7 7 O 1.42898 * 109.46913 * 179.97438 * 5 3 2 8 8 C 1.42899 * 114.00051 * 269.99850 * 7 5 3 9 9 H 1.09000 * 110.64475 * 26.86307 * 8 7 5 10 10 C 1.55154 * 110.71901 * 150.00278 * 8 7 5 11 11 C 1.54913 * 101.58290 * 154.04516 * 10 8 7 12 12 N 1.47424 * 104.82792 * 322.99021 * 11 10 8 13 13 C 1.36938 * 125.64355 * 203.86074 * 12 11 10 14 14 H 1.07997 * 119.99870 * 161.52651 * 13 12 11 15 15 C 1.38813 * 120.00393 * 341.52649 * 13 12 11 16 16 N 1.31613 * 120.00026 * 157.52879 * 15 13 12 17 17 Si 1.86799 * 119.99872 * 337.53315 * 15 13 12 18 18 H 1.48500 * 109.47046 * 84.53269 * 17 15 13 19 19 H 1.48499 * 109.47121 * 204.53230 * 17 15 13 20 20 H 1.48503 * 109.46914 * 324.53237 * 17 15 13 21 21 C 1.47016 * 108.70430 * 24.12932 * 12 11 10 22 22 C 1.50692 * 109.47308 * 300.00293 * 5 3 2 23 23 C 1.38265 * 119.94425 * 279.73198 * 22 5 3 24 24 C 1.38142 * 120.05786 * 179.72803 * 23 22 5 25 25 C 1.38739 * 119.94295 * 0.51559 * 24 23 22 26 26 O 1.35898 * 120.05559 * 179.72912 * 25 24 23 27 27 C 1.42904 * 117.00253 * 0.02562 * 26 25 24 28 28 C 1.38735 * 119.88687 * 359.75248 * 25 24 23 29 29 C 1.38140 * 119.94128 * 0.02562 * 28 25 24 30 30 H 1.09000 * 109.46965 * 299.99860 * 1 2 3 31 31 H 1.09006 * 109.47158 * 59.99743 * 1 2 3 32 32 H 1.09003 * 109.47458 * 179.97438 * 1 2 3 33 33 H 1.08998 * 111.00742 * 35.96691 * 10 8 7 34 34 H 1.09006 * 111.00517 * 272.11829 * 10 8 7 35 35 H 1.08997 * 110.36402 * 204.15447 * 11 10 8 36 36 H 1.08994 * 110.46036 * 81.87918 * 11 10 8 37 37 H 0.97008 * 119.99978 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.88017 * 118.35603 * 21 12 11 39 39 H 1.09000 * 109.87989 * 239.51674 * 21 12 11 40 40 H 1.07996 * 119.96856 * 359.96762 * 23 22 5 41 41 H 1.08000 * 120.03333 * 180.28986 * 24 23 22 42 42 H 1.08998 * 109.47001 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.46760 * 300.00194 * 27 26 25 44 44 H 1.08999 * 109.46818 * 60.00010 * 27 26 25 45 45 H 1.07996 * 120.02775 * 180.02562 * 28 25 24 46 46 H 1.08004 * 119.97003 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8909 7 8 3.9715 2.6452 -0.0011 8 6 4.1358 3.2022 -1.3067 9 1 3.5022 2.6855 -2.0275 10 6 3.8289 4.7231 -1.2972 11 6 4.6749 5.2186 -2.4966 12 7 5.9044 4.4064 -2.4522 13 6 7.1143 4.7604 -2.9870 14 1 8.0154 4.2626 -2.6605 15 6 7.1827 5.7589 -3.9489 16 7 8.3110 6.4074 -4.1452 17 14 5.6732 6.1821 -4.9647 18 1 4.8266 7.1451 -4.2156 19 1 6.0970 6.7917 -6.2507 20 1 4.8961 4.9459 -5.2351 21 6 5.6148 3.1509 -1.7443 22 6 4.1057 0.5914 1.2294 23 6 4.1105 1.2558 2.4420 24 6 4.5992 0.6295 3.5721 25 6 5.0953 -0.6634 3.4876 26 8 5.5816 -1.2797 4.5969 27 6 5.5510 -0.5373 5.8176 28 6 5.0944 -1.3259 2.2686 29 6 4.6004 -0.6968 1.1424 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.1624 5.1833 -0.3672 34 1 2.7678 4.9086 -1.4644 35 1 4.9141 6.2757 -2.3810 36 1 4.1430 5.0510 -3.4331 37 1 8.3586 7.1054 -4.8171 38 1 5.7748 2.3039 -2.4114 39 1 6.2577 3.0623 -0.8686 40 1 3.7284 2.2638 2.5063 41 1 4.5985 1.1471 4.5200 42 1 5.9668 -1.1439 6.6222 43 1 6.1417 0.3718 5.7048 44 1 4.5207 -0.2739 6.0569 45 1 5.4796 -2.3325 2.2003 46 1 4.5999 -1.2119 0.1931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223564496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:16 Heat of formation + Delta-G solvation = -120.613949 kcal Electronic energy + Delta-G solvation = -29307.191147 eV Core-core repulsion = 25163.214448 eV Total energy + Delta-G solvation = -4143.976698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92881 -40.96721 -40.09286 -38.74230 -37.85021 -37.14038 -34.46515 -32.79080 -32.08808 -31.32331 -29.64339 -29.31066 -28.27893 -27.00511 -26.02956 -23.73847 -23.12866 -22.82330 -21.94473 -21.64741 -19.20958 -19.10987 -18.82073 -18.41268 -17.86714 -17.59469 -17.20027 -16.99114 -16.64045 -16.54506 -15.92618 -15.63265 -15.36555 -15.07297 -14.93178 -14.63371 -14.36478 -14.22072 -14.07374 -13.87018 -13.81983 -13.63486 -13.50855 -13.15829 -12.93765 -12.87499 -12.84007 -12.56158 -12.30896 -12.18667 -12.03604 -11.82890 -11.79928 -11.72735 -11.61656 -11.47385 -10.88555 -10.67012 -9.98477 -9.18949 -9.09675 -8.19471 -5.47359 0.24723 0.37459 1.02432 1.31014 1.38347 1.47232 1.50608 2.33235 2.36897 2.40724 2.80483 3.01190 3.35203 3.49521 3.58597 3.71932 3.79721 3.83615 3.91563 4.00493 4.05288 4.27279 4.29201 4.30526 4.31731 4.39608 4.42048 4.47462 4.56219 4.68520 4.69313 4.74556 4.75158 4.85191 4.91049 4.95628 5.05126 5.12604 5.18911 5.25314 5.33805 5.50196 5.64042 5.72101 5.94174 6.08820 6.40219 6.63973 6.71720 7.50263 8.05843 9.00248 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.003168 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.404424 B = 8837.592302 C =10359.546541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.445 3.555 4 O -0.520 6.520 5 C 0.144 3.856 6 H 0.131 0.869 7 O -0.343 6.343 8 C 0.088 3.912 9 H 0.087 0.913 10 C -0.112 4.112 11 C 0.105 3.895 12 N -0.625 5.625 13 C -0.237 4.237 14 H 0.060 0.940 15 C -0.035 4.035 16 N -0.955 5.955 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.306 1.306 20 H -0.266 1.266 21 C 0.116 3.884 22 C -0.140 4.140 23 C -0.060 4.060 24 C -0.215 4.215 25 C 0.127 3.873 26 O -0.330 6.330 27 C 0.017 3.983 28 C -0.159 4.159 29 C -0.049 4.049 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.031 0.969 37 H 0.264 0.736 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.121 0.879 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.152 0.848 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 -19.350 16.832 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.288 3.712 4 O -0.408 6.408 5 C 0.085 3.915 6 H 0.148 0.852 7 O -0.260 6.260 8 C 0.030 3.970 9 H 0.105 0.895 10 C -0.150 4.150 11 C -0.020 4.020 12 N -0.353 5.353 13 C -0.366 4.366 14 H 0.078 0.922 15 C -0.229 4.229 16 N -0.601 5.601 17 Si 0.773 3.227 18 H -0.194 1.194 19 H -0.234 1.234 20 H -0.191 1.191 21 C -0.009 4.009 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.233 4.233 25 C 0.082 3.918 26 O -0.244 6.244 27 C -0.077 4.077 28 C -0.177 4.177 29 C -0.067 4.067 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.139 0.861 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.170 0.830 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.570 -19.028 16.943 29.859 hybrid contribution -0.445 1.010 -0.800 1.363 sum -16.015 -18.018 16.143 29.012 Atomic orbital electron populations 1.23572 0.74770 1.05830 1.02413 1.86505 1.24897 1.32036 1.83433 1.24650 0.92781 0.81836 0.71929 1.90672 1.67230 1.37332 1.45561 1.20422 0.85798 0.84860 1.00449 0.85179 1.88079 1.86237 1.23742 1.27936 1.23137 0.94962 0.95090 0.83811 0.89470 1.22730 1.00311 0.93607 0.98349 1.22072 0.87369 0.95888 0.96649 1.44737 1.07313 1.16944 1.66275 1.18566 0.83884 1.17674 1.16456 0.92231 1.25632 0.99306 0.98127 0.99878 1.69969 1.28690 1.24972 1.36494 0.85970 0.80190 0.78382 0.78179 1.19408 1.23401 1.19146 1.21886 0.94991 0.88460 0.95610 1.19164 1.06183 0.95919 0.92763 1.20869 0.95976 0.99227 0.91736 1.21375 1.06247 0.95334 1.00382 1.19322 0.93283 0.91459 0.87754 1.86053 1.78036 1.43574 1.16702 1.23348 1.02814 0.97972 0.83577 1.20640 1.05271 1.02107 0.89694 1.21022 0.93646 0.92475 0.99520 0.92259 0.91942 0.84711 0.90275 0.88530 0.93496 0.95100 0.92735 0.93834 0.94410 0.86089 0.83684 0.86084 0.92127 0.91689 0.83013 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.22 10.48 -51.41 -0.54 -7.76 16 3 C 0.45 11.28 7.27 71.24 0.52 11.79 16 4 O -0.52 -16.17 16.22 28.40 0.46 -15.71 16 5 C 0.14 3.50 2.67 29.10 0.08 3.58 16 6 H 0.13 2.57 7.64 -2.39 -0.02 2.55 16 7 O -0.34 -10.43 8.58 -129.90 -1.11 -11.55 16 8 C 0.09 2.89 3.20 31.78 0.10 2.99 16 9 H 0.09 2.55 7.80 -2.39 -0.02 2.54 16 10 C -0.11 -3.91 6.81 31.99 0.22 -3.69 16 11 C 0.10 4.55 4.70 86.86 0.41 4.96 16 12 N -0.62 -30.87 3.21 -692.02 -2.22 -33.09 16 13 C -0.24 -14.00 10.57 84.03 0.89 -13.11 16 14 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 15 C -0.03 -2.08 5.43 84.86 0.46 -1.62 16 16 N -0.95 -61.10 13.97 21.65 0.30 -60.80 16 17 Si 0.94 47.21 24.27 68.60 1.66 48.88 16 18 H -0.27 -12.62 6.49 99.48 0.65 -11.97 16 19 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 20 H -0.27 -12.71 6.66 99.48 0.66 -12.05 16 21 C 0.12 4.60 7.02 86.73 0.61 5.21 16 22 C -0.14 -3.16 4.90 -19.85 -0.10 -3.26 16 23 C -0.06 -1.41 9.35 22.25 0.21 -1.20 16 24 C -0.21 -4.36 9.04 22.37 0.20 -4.16 16 25 C 0.13 2.56 6.69 22.51 0.15 2.71 16 26 O -0.33 -6.03 10.50 -92.40 -0.97 -7.00 16 27 C 0.02 0.19 9.81 113.37 1.11 1.30 16 28 C -0.16 -2.91 9.99 22.37 0.22 -2.69 16 29 C -0.05 -0.89 9.66 22.25 0.21 -0.68 16 30 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.06 0.93 8.13 -2.38 -0.02 0.91 16 32 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 36 H 0.03 1.34 5.55 -2.39 -0.01 1.33 16 37 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.56 8.06 -2.39 -0.02 1.55 16 40 H 0.12 3.04 7.77 -2.91 -0.02 3.02 16 41 H 0.15 2.32 6.30 -2.91 -0.02 2.30 16 42 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 44 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.16 2.02 8.03 -2.91 -0.02 2.00 16 Total: -1.00 -76.31 379.67 4.95 -71.36 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.88 Total: 11.95 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.49 Total: 3.73 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -1.92 Total: -93.89 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -2.16 Total: -42.02 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.66 Total: 48.88 kcal Total: -76.31 4.95 -71.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223564496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.256 kcal (2) G-P(sol) polarization free energy of solvation -76.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds