Wall clock time and date at job start Tue Mar 31 2020 18:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99824 * 2 1 4 4 O 1.20833 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47074 * 305.00218 * 5 3 2 7 7 O 1.42894 * 109.47501 * 185.00130 * 5 3 2 8 8 C 1.42905 * 113.99967 * 89.99805 * 7 5 3 9 9 C 1.53935 * 113.73498 * 248.76682 * 8 7 5 10 10 N 1.48186 * 86.10168 * 221.95978 * 9 8 7 11 11 C 1.46895 * 111.07427 * 137.52231 * 10 9 8 12 12 C 1.50708 * 109.46908 * 70.56351 * 11 10 9 13 13 H 1.07996 * 119.99785 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99558 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47073 * 90.00323 * 16 14 12 18 18 H 1.48504 * 109.46558 * 209.99720 * 16 14 12 19 19 H 1.48489 * 109.47282 * 329.99732 * 16 14 12 20 20 C 1.47960 * 90.79916 * 24.59913 * 10 9 8 21 21 C 1.50702 * 109.46843 * 64.99962 * 5 3 2 22 22 C 1.38267 * 119.94160 * 84.73211 * 21 5 3 23 23 C 1.38145 * 120.05485 * 179.72664 * 22 21 5 24 24 C 1.38739 * 119.94110 * 0.54275 * 23 22 21 25 25 O 1.35895 * 120.05233 * 179.75385 * 24 23 22 26 26 C 1.42896 * 117.00252 * 359.97393 * 25 24 23 27 27 C 1.38731 * 119.88732 * 359.72717 * 24 23 22 28 28 C 1.38137 * 119.94711 * 0.02562 * 27 24 23 29 29 H 1.09005 * 109.47385 * 59.99857 * 1 2 3 30 30 H 1.09006 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 299.99906 * 1 2 3 32 32 H 1.08998 * 112.93595 * 20.33708 * 8 7 5 33 33 H 1.09000 * 113.76137 * 336.24113 * 9 8 7 34 34 H 1.08998 * 113.75757 * 107.60309 * 9 8 7 35 35 H 1.08999 * 109.47345 * 190.56501 * 11 10 9 36 36 H 1.08996 * 109.46906 * 310.56784 * 11 10 9 37 37 H 0.96993 * 120.00194 * 180.02562 * 15 14 12 38 38 H 1.09001 * 113.75866 * 221.08211 * 20 10 9 39 39 H 1.09001 * 113.75942 * 89.72328 * 20 10 9 40 40 H 1.07995 * 119.96955 * 359.97438 * 22 21 5 41 41 H 1.08001 * 120.02946 * 180.27233 * 23 22 21 42 42 H 1.09001 * 109.47209 * 60.00845 * 26 25 24 43 43 H 1.09003 * 109.47434 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47673 * 300.00166 * 26 25 24 45 45 H 1.08008 * 120.02335 * 179.97438 * 27 24 23 46 46 H 1.08002 * 119.97471 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9596 0.7055 0.8427 7 8 3.9716 2.6402 0.1179 8 6 4.1419 3.0822 1.4662 9 6 3.0876 4.1080 1.9198 10 7 4.2113 4.8258 2.5663 11 6 4.1073 6.2748 2.3488 12 6 2.9537 6.8215 3.1497 13 1 2.3577 6.1588 3.7596 14 6 2.6592 8.1678 3.1037 15 7 3.3847 8.9746 2.3606 16 14 1.2297 8.8455 4.0970 17 1 1.7097 9.2499 5.4428 18 1 0.6582 10.0256 3.4000 19 1 0.1849 7.7998 4.2377 20 6 5.1722 4.2153 1.6213 21 6 4.0998 0.7014 -1.2868 22 6 4.1849 1.4975 -2.4141 23 6 4.6790 0.9757 -3.5939 24 6 5.0793 -0.3515 -3.6501 25 8 5.5610 -0.8685 -4.8109 26 6 5.6270 0.0114 -5.9349 27 6 4.9877 -1.1496 -2.5191 28 6 4.4977 -0.6217 -1.3404 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.2847 2.2603 2.1678 33 1 2.6290 4.6589 1.0987 34 1 2.3585 3.7064 2.6236 35 1 5.0315 6.7572 2.6670 36 1 3.9403 6.4722 1.2899 37 1 3.1777 9.9217 2.3286 38 1 6.1057 3.8994 2.0870 39 1 5.3247 4.7976 0.7126 40 1 3.8687 2.5292 -2.3711 41 1 4.7494 1.5991 -4.4730 42 1 6.2758 0.8547 -5.6986 43 1 6.0279 -0.5263 -6.7942 44 1 4.6272 0.3767 -6.1697 45 1 5.2983 -2.1832 -2.5604 46 1 4.4266 -1.2425 -0.4595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223568074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:45 Heat of formation + Delta-G solvation = -92.565194 kcal Electronic energy + Delta-G solvation = -28896.766892 eV Core-core repulsion = 24754.006479 eV Total energy + Delta-G solvation = -4142.760413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90414 -40.17816 -39.29708 -38.01323 -36.79562 -35.95086 -32.84160 -31.72642 -31.33007 -29.06201 -28.53640 -27.66326 -26.16327 -25.57964 -24.81045 -22.94722 -22.27397 -21.52169 -20.83645 -19.38067 -18.46565 -17.86824 -17.42400 -16.91249 -16.46407 -16.32913 -16.07610 -16.03094 -15.59260 -14.97354 -14.60852 -14.40255 -14.23005 -13.99533 -13.74799 -13.56250 -13.35658 -13.09914 -12.91139 -12.50920 -12.34380 -12.26604 -12.07532 -11.96134 -11.63910 -11.54726 -11.42728 -11.29228 -11.03536 -10.88482 -10.85406 -10.62404 -10.42470 -10.24159 -9.66142 -9.34788 -9.22185 -9.12770 -8.45630 -8.40947 -7.78726 -6.01563 -4.02939 1.03449 1.14981 2.15681 2.49550 2.95655 3.33958 3.38164 3.39275 3.44047 3.73121 4.43148 4.45308 4.55222 4.61905 4.70996 4.77651 4.82466 4.83674 4.90880 4.99922 5.04137 5.08442 5.11838 5.16447 5.21771 5.23830 5.34828 5.40293 5.41812 5.78031 5.84513 5.93536 6.09850 6.14020 6.19646 6.27077 6.32157 6.45942 6.47125 6.56324 6.70859 7.07817 7.18410 7.29442 7.65693 7.74305 7.90892 8.13797 8.44672 9.03848 9.61080 11.09881 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002648 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.616923 B =10571.036241 C =11514.593316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.435 3.565 4 O -0.475 6.475 5 C 0.151 3.849 6 H 0.106 0.894 7 O -0.336 6.336 8 C 0.043 3.957 9 C 0.016 3.984 10 N -0.479 5.479 11 C 0.164 3.836 12 C -0.509 4.509 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.007 3.993 21 C -0.128 4.128 22 C -0.042 4.042 23 C -0.211 4.211 24 C 0.134 3.866 25 O -0.318 6.318 26 C 0.026 3.974 27 C -0.155 4.155 28 C -0.054 4.054 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.001 0.999 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.057 0.943 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.134 0.866 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -24.016 -13.315 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.275 3.725 4 O -0.359 6.359 5 C 0.091 3.909 6 H 0.124 0.876 7 O -0.253 6.253 8 C -0.014 4.014 9 C -0.113 4.113 10 N -0.203 5.203 11 C 0.038 3.962 12 C -0.547 4.547 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.060 4.060 23 C -0.230 4.230 24 C 0.088 3.912 25 O -0.232 6.232 26 C -0.069 4.069 27 C -0.174 4.174 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.152 0.848 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.062 -23.602 -12.873 26.963 hybrid contribution -1.261 1.047 -0.283 1.663 sum 0.801 -22.555 -13.157 26.124 Atomic orbital electron populations 1.23251 0.76463 1.03449 1.02705 1.86487 1.23305 1.33478 1.84357 1.24547 0.92628 0.81861 0.73449 1.90747 1.66307 1.36051 1.42787 1.20191 0.86169 0.86631 0.97896 0.87636 1.88137 1.85681 1.23356 1.28102 1.24792 0.98831 0.96312 0.81508 1.24151 0.94977 0.94240 0.97888 1.68585 1.02653 1.09100 1.40005 1.20188 0.98117 0.82116 0.95779 1.21085 1.13522 0.92948 1.27182 0.92049 1.24986 0.96889 0.96979 0.95703 1.69953 1.39693 1.04322 1.39780 0.86484 0.82397 0.78457 0.80022 1.20582 1.21249 1.19855 1.24131 0.96894 0.94360 0.96870 1.19200 1.05418 0.94552 0.93727 1.20901 0.94210 1.00086 0.90799 1.21256 1.06975 0.94809 0.99926 1.19120 0.93699 0.92100 0.86244 1.86056 1.79404 1.39821 1.17880 1.23082 1.01859 0.94874 0.87088 1.20323 1.05892 1.00409 0.90732 1.20743 0.95166 0.93708 0.97576 0.91994 0.88218 0.91766 0.89066 0.90244 0.90641 0.94891 0.98119 0.92896 0.89752 0.90960 0.84672 0.85171 0.92400 0.88214 0.92530 0.84828 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.26 10.55 -39.26 -0.41 -4.67 16 3 C 0.43 6.17 7.23 36.00 0.26 6.43 16 4 O -0.47 -8.44 16.06 -25.47 -0.41 -8.85 16 5 C 0.15 1.92 2.83 -29.03 -0.08 1.84 16 6 H 0.11 1.05 7.34 -51.93 -0.38 0.67 16 7 O -0.34 -5.29 8.70 -55.14 -0.48 -5.77 16 8 C 0.04 0.71 4.43 -25.80 -0.11 0.60 16 9 C 0.02 0.34 7.13 -2.63 -0.02 0.32 16 10 N -0.48 -10.83 6.25 -239.76 -1.50 -12.33 16 11 C 0.16 4.46 4.58 -4.97 -0.02 4.43 16 12 C -0.51 -14.91 8.84 -34.43 -0.30 -15.21 16 13 H 0.06 1.79 7.80 -52.49 -0.41 1.38 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 16 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.01 0.12 7.81 -2.76 -0.02 0.10 16 21 C -0.13 -1.49 4.98 -104.60 -0.52 -2.01 16 22 C -0.04 -0.50 9.34 -39.60 -0.37 -0.87 16 23 C -0.21 -2.20 9.04 -39.43 -0.36 -2.56 16 24 C 0.13 1.38 6.69 -39.21 -0.26 1.11 16 25 O -0.32 -3.03 10.50 -19.41 -0.20 -3.23 16 26 C 0.03 0.16 9.81 101.05 0.99 1.15 16 27 C -0.15 -1.47 9.99 -39.44 -0.39 -1.86 16 28 C -0.05 -0.51 9.67 -39.61 -0.38 -0.89 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 32 H 0.09 1.28 7.47 -51.93 -0.39 0.89 16 33 H 0.08 1.86 7.79 -51.93 -0.40 1.45 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 40 H 0.14 1.76 7.63 -52.49 -0.40 1.36 16 41 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 42 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 45 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 46 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -34.87 391.13 -8.88 -43.75 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.85 Total: -0.97 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.63 Total: -4.48 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.76 Total: -39.00 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -1.51 Total: -22.52 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.87 -8.88 -43.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223568074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.819 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds