Wall clock time and date at job start Tue Mar 31 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99824 * 2 1 4 4 O 1.20833 * 120.00229 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00319 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47074 * 305.00218 * 5 3 2 7 7 O 1.42894 * 109.47501 * 185.00130 * 5 3 2 8 8 C 1.42905 * 113.99967 * 89.99805 * 7 5 3 9 9 C 1.53935 * 113.73498 * 248.76682 * 8 7 5 10 10 N 1.48186 * 86.10168 * 221.95978 * 9 8 7 11 11 C 1.46895 * 111.07427 * 137.52231 * 10 9 8 12 12 C 1.50708 * 109.46908 * 70.56351 * 11 10 9 13 13 H 1.07996 * 119.99785 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99722 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00116 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99558 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47073 * 90.00323 * 16 14 12 18 18 H 1.48504 * 109.46558 * 209.99720 * 16 14 12 19 19 H 1.48489 * 109.47282 * 329.99732 * 16 14 12 20 20 C 1.47960 * 90.79916 * 24.59913 * 10 9 8 21 21 C 1.50702 * 109.46843 * 64.99962 * 5 3 2 22 22 C 1.38267 * 119.94160 * 84.73211 * 21 5 3 23 23 C 1.38145 * 120.05485 * 179.72664 * 22 21 5 24 24 C 1.38739 * 119.94110 * 0.54275 * 23 22 21 25 25 O 1.35895 * 120.05233 * 179.75385 * 24 23 22 26 26 C 1.42896 * 117.00252 * 359.97393 * 25 24 23 27 27 C 1.38731 * 119.88732 * 359.72717 * 24 23 22 28 28 C 1.38137 * 119.94711 * 0.02562 * 27 24 23 29 29 H 1.09005 * 109.47385 * 59.99857 * 1 2 3 30 30 H 1.09006 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47273 * 299.99906 * 1 2 3 32 32 H 1.08998 * 112.93595 * 20.33708 * 8 7 5 33 33 H 1.09000 * 113.76137 * 336.24113 * 9 8 7 34 34 H 1.08998 * 113.75757 * 107.60309 * 9 8 7 35 35 H 1.08999 * 109.47345 * 190.56501 * 11 10 9 36 36 H 1.08996 * 109.46906 * 310.56784 * 11 10 9 37 37 H 0.96993 * 120.00194 * 180.02562 * 15 14 12 38 38 H 1.09001 * 113.75866 * 221.08211 * 20 10 9 39 39 H 1.09001 * 113.75942 * 89.72328 * 20 10 9 40 40 H 1.07995 * 119.96955 * 359.97438 * 22 21 5 41 41 H 1.08001 * 120.02946 * 180.27233 * 23 22 21 42 42 H 1.09001 * 109.47209 * 60.00845 * 26 25 24 43 43 H 1.09003 * 109.47434 * 180.02562 * 26 25 24 44 44 H 1.09005 * 109.47673 * 300.00166 * 26 25 24 45 45 H 1.08008 * 120.02335 * 179.97438 * 27 24 23 46 46 H 1.08002 * 119.97471 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9596 0.7055 0.8427 7 8 3.9716 2.6402 0.1179 8 6 4.1419 3.0822 1.4662 9 6 3.0876 4.1080 1.9198 10 7 4.2113 4.8258 2.5663 11 6 4.1073 6.2748 2.3488 12 6 2.9537 6.8215 3.1497 13 1 2.3577 6.1588 3.7596 14 6 2.6592 8.1678 3.1037 15 7 3.3847 8.9746 2.3606 16 14 1.2297 8.8455 4.0970 17 1 1.7097 9.2499 5.4428 18 1 0.6582 10.0256 3.4000 19 1 0.1849 7.7998 4.2377 20 6 5.1722 4.2153 1.6213 21 6 4.0998 0.7014 -1.2868 22 6 4.1849 1.4975 -2.4141 23 6 4.6790 0.9757 -3.5939 24 6 5.0793 -0.3515 -3.6501 25 8 5.5610 -0.8685 -4.8109 26 6 5.6270 0.0114 -5.9349 27 6 4.9877 -1.1496 -2.5191 28 6 4.4977 -0.6217 -1.3404 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.2847 2.2603 2.1678 33 1 2.6290 4.6589 1.0987 34 1 2.3585 3.7064 2.6236 35 1 5.0315 6.7572 2.6670 36 1 3.9403 6.4722 1.2899 37 1 3.1777 9.9217 2.3286 38 1 6.1057 3.8994 2.0870 39 1 5.3247 4.7976 0.7126 40 1 3.8687 2.5292 -2.3711 41 1 4.7494 1.5991 -4.4730 42 1 6.2758 0.8547 -5.6986 43 1 6.0279 -0.5263 -6.7942 44 1 4.6272 0.3767 -6.1697 45 1 5.2983 -2.1832 -2.5604 46 1 4.4266 -1.2425 -0.4595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223568074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:44 Heat of formation + Delta-G solvation = -116.606060 kcal Electronic energy + Delta-G solvation = -28897.809382 eV Core-core repulsion = 24754.006479 eV Total energy + Delta-G solvation = -4143.802903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94206 -40.97477 -40.77380 -38.93309 -37.87675 -37.13975 -35.02405 -32.72782 -32.09614 -30.91702 -29.38780 -28.33229 -27.34420 -27.10172 -26.53759 -23.86867 -23.49035 -22.92725 -21.82186 -20.94769 -19.20758 -18.91773 -18.72178 -18.41703 -17.91734 -17.46084 -16.99406 -16.96179 -16.65206 -16.33051 -16.15789 -15.69427 -15.51114 -14.93132 -14.88010 -14.57660 -14.32659 -14.22025 -14.17180 -13.86158 -13.72923 -13.59745 -13.31992 -13.19101 -12.93919 -12.84106 -12.72276 -12.57919 -12.39354 -12.20927 -12.13239 -11.81417 -11.79982 -11.63130 -11.52110 -11.22306 -10.69407 -10.67570 -9.99191 -9.69208 -9.18977 -8.27691 -6.38505 0.23458 0.36618 1.08811 1.35492 1.38147 1.49122 1.53289 2.33127 2.34853 2.39850 2.80188 3.05067 3.23637 3.44116 3.55475 3.77112 3.81861 3.88994 3.93808 4.03502 4.21838 4.30144 4.30781 4.31629 4.37973 4.41851 4.54334 4.55007 4.64696 4.68346 4.69136 4.74120 4.77370 4.85216 4.91600 5.04407 5.07376 5.18825 5.28577 5.34049 5.45765 5.50507 5.71174 5.71908 5.98224 6.04786 6.32623 6.38893 6.69212 6.75414 7.30964 8.84451 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.002648 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.616923 B =10571.036241 C =11514.593316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.437 3.563 4 O -0.522 6.522 5 C 0.148 3.852 6 H 0.144 0.856 7 O -0.351 6.351 8 C 0.073 3.927 9 C 0.010 3.990 10 N -0.488 5.488 11 C 0.180 3.820 12 C -0.531 4.531 13 H 0.058 0.942 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.268 1.268 20 C 0.005 3.995 21 C -0.140 4.140 22 C -0.063 4.063 23 C -0.217 4.217 24 C 0.128 3.872 25 O -0.329 6.329 26 C 0.017 3.983 27 C -0.156 4.156 28 C -0.044 4.044 29 H 0.054 0.946 30 H 0.139 0.861 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.009 0.991 36 H -0.031 1.031 37 H 0.266 0.734 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.141 0.859 42 H 0.061 0.939 43 H 0.122 0.878 44 H 0.061 0.939 45 H 0.156 0.844 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -27.018 -12.791 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.280 3.720 4 O -0.410 6.410 5 C 0.088 3.912 6 H 0.162 0.838 7 O -0.268 6.268 8 C 0.015 3.985 9 C -0.119 4.119 10 N -0.212 5.212 11 C 0.053 3.947 12 C -0.569 4.569 13 H 0.076 0.924 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.124 4.124 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.235 4.235 24 C 0.082 3.918 25 O -0.242 6.242 26 C -0.077 4.077 27 C -0.174 4.174 28 C -0.062 4.062 29 H 0.073 0.927 30 H 0.157 0.843 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.027 0.973 36 H -0.014 1.014 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.079 0.921 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.174 0.826 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.149 -26.646 -12.364 29.453 hybrid contribution -1.280 1.872 -0.594 2.344 sum 0.869 -24.774 -12.958 27.972 Atomic orbital electron populations 1.23537 0.75091 1.05795 1.02099 1.86478 1.24605 1.32004 1.83620 1.24920 0.93301 0.81767 0.72043 1.90741 1.67421 1.37643 1.45210 1.20513 0.85299 0.85313 1.00060 0.83838 1.88128 1.85634 1.25788 1.27270 1.24480 0.94859 0.96311 0.82850 1.24079 0.95525 0.95493 0.96829 1.68466 1.04829 1.06226 1.41708 1.19822 0.96358 0.85180 0.93333 1.21391 1.14315 0.93567 1.27626 0.92369 1.25963 0.99809 0.97226 0.96723 1.70077 1.41402 1.04807 1.40996 0.85348 0.78646 0.77791 0.78658 1.19206 1.20406 1.19208 1.24205 0.97978 0.94564 0.95626 1.19205 1.06535 0.95557 0.92807 1.20848 0.95749 0.99448 0.92129 1.21351 1.06922 0.95453 0.99803 1.19332 0.93427 0.91982 0.87037 1.86048 1.79154 1.40762 1.18243 1.23339 1.02468 0.95147 0.86747 1.20673 1.05077 1.01358 0.90317 1.21033 0.93658 0.92776 0.98718 0.92744 0.84334 0.92364 0.84987 0.93966 0.90518 0.97326 1.01372 0.92484 0.86501 0.92566 0.87007 0.84134 0.92056 0.85952 0.92077 0.82617 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.35 -7.66 10.55 -51.42 -0.54 -8.20 16 3 C 0.44 12.09 7.23 71.24 0.51 12.61 16 4 O -0.52 -19.10 16.06 28.36 0.46 -18.65 16 5 C 0.15 3.49 2.83 29.10 0.08 3.57 16 6 H 0.14 2.28 7.34 -2.38 -0.02 2.26 16 7 O -0.35 -10.97 8.70 -129.95 -1.13 -12.10 16 8 C 0.07 2.34 4.43 31.24 0.14 2.47 16 9 C 0.01 0.43 7.13 86.37 0.62 1.04 16 10 N -0.49 -22.59 6.25 -915.69 -5.72 -28.31 16 11 C 0.18 10.29 4.58 85.56 0.39 10.69 16 12 C -0.53 -32.13 8.84 25.60 0.23 -31.90 16 13 H 0.06 3.48 7.80 -2.91 -0.02 3.45 16 14 C 0.00 0.06 5.46 84.66 0.46 0.53 16 15 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 16 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.00 0.18 7.81 86.41 0.67 0.86 16 21 C -0.14 -3.04 4.98 -19.85 -0.10 -3.14 16 22 C -0.06 -1.55 9.34 22.25 0.21 -1.34 16 23 C -0.22 -4.45 9.04 22.37 0.20 -4.25 16 24 C 0.13 2.42 6.69 22.51 0.15 2.57 16 25 O -0.33 -5.66 10.50 -92.37 -0.97 -6.63 16 26 C 0.02 0.18 9.81 113.37 1.11 1.30 16 27 C -0.16 -2.51 9.99 22.36 0.22 -2.28 16 28 C -0.04 -0.69 9.67 22.25 0.22 -0.48 16 29 H 0.05 1.03 8.13 -2.38 -0.02 1.01 16 30 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.06 1.09 8.13 -2.39 -0.02 1.08 16 32 H 0.13 3.20 7.47 -2.39 -0.02 3.18 16 33 H 0.04 2.11 7.79 -2.39 -0.02 2.10 16 34 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H -0.03 -1.96 7.70 -2.39 -0.02 -1.97 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.06 2.25 7.79 -2.39 -0.02 2.23 16 40 H 0.11 3.17 7.63 -2.91 -0.02 3.15 16 41 H 0.14 2.40 6.30 -2.91 -0.02 2.39 16 42 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 43 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.59 7.66 -2.38 -0.02 0.57 16 45 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -79.53 391.13 1.69 -77.84 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.98 Total: 11.96 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.32 Total: -6.07 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -5.44 Total: -86.55 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -2.19 Total: -45.58 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.53 1.69 -77.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223568074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.764 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds