Wall clock time and date at job start Tue Mar 31 2020 18:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34751 * 116.99466 * 2 1 4 4 O 1.21504 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.47473 * 119.99696 * 180.02562 * 3 2 1 6 6 C 1.39811 * 120.09340 * 359.97438 * 5 3 2 7 7 C 1.37654 * 119.90524 * 179.97438 * 6 5 3 8 8 C 1.39033 * 120.09399 * 0.02562 * 7 6 5 9 9 O 1.35700 * 119.90632 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99906 * 0.02562 * 9 8 7 11 11 C 1.38990 * 120.18859 * 0.02562 * 8 7 6 12 12 C 1.50696 * 119.95492 * 179.97438 * 11 8 7 13 13 O 1.42898 * 109.47213 * 179.97438 * 12 11 8 14 14 C 1.42898 * 114.00445 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.64038 * 328.31998 * 14 13 12 16 16 C 1.55150 * 110.72643 * 204.97717 * 14 13 12 17 17 C 1.55124 * 101.48860 * 205.96901 * 16 14 13 18 18 N 1.47428 * 104.71992 * 37.29733 * 17 16 14 19 19 C 1.36941 * 125.64344 * 155.82203 * 18 17 16 20 20 H 1.08003 * 119.99654 * 190.44130 * 19 18 17 21 21 C 1.38811 * 120.00604 * 10.43256 * 19 18 17 22 22 N 1.31621 * 119.99472 * 9.07328 * 21 19 18 23 23 Si 1.86802 * 120.00075 * 189.06828 * 21 19 18 24 24 H 1.48497 * 109.46995 * 84.99393 * 23 21 19 25 25 H 1.48497 * 109.47222 * 324.99067 * 23 21 19 26 26 H 1.48502 * 109.46692 * 204.99429 * 23 21 19 27 27 C 1.47018 * 108.70261 * 335.55012 * 18 17 16 28 28 C 1.37706 * 120.09091 * 0.26847 * 11 8 7 29 29 H 1.08998 * 109.47295 * 299.99571 * 1 2 3 30 30 H 1.09000 * 109.47337 * 60.00257 * 1 2 3 31 31 H 1.09005 * 109.46498 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.04506 * 359.97438 * 6 5 3 33 33 H 1.08007 * 119.95316 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46932 * 60.00016 * 10 9 8 35 35 H 1.09003 * 109.46885 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47019 * 299.99810 * 10 9 8 37 37 H 1.08997 * 109.47074 * 59.99917 * 12 11 8 38 38 H 1.08992 * 109.47248 * 299.99499 * 12 11 8 39 39 H 1.09006 * 111.00325 * 324.20772 * 16 14 13 40 40 H 1.09003 * 111.00510 * 88.01990 * 16 14 13 41 41 H 1.08991 * 110.50089 * 278.45300 * 17 16 14 42 42 H 1.08999 * 110.34333 * 156.05813 * 17 16 14 43 43 H 0.96997 * 119.99379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87991 * 120.71198 * 27 18 17 45 45 H 1.09003 * 109.88107 * 241.71562 * 27 18 17 46 46 H 1.08001 * 120.04429 * 179.70979 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 0.0005 5 6 3.5364 1.2779 -0.0006 6 6 4.2998 0.1067 -0.0006 7 6 5.6742 0.1833 -0.0016 8 6 6.3033 1.4231 -0.0022 9 8 7.6584 1.4942 -0.0027 10 6 8.3730 0.2567 -0.0032 11 6 5.5482 2.5900 -0.0011 12 6 6.2356 3.9311 -0.0011 13 8 5.2539 4.9695 -0.0005 14 6 5.8031 6.2887 0.0001 15 1 6.7522 6.3095 0.5358 16 6 4.7999 7.3009 0.6134 17 6 5.2367 8.6224 -0.0715 18 7 5.6046 8.2292 -1.4440 19 6 5.6035 9.0533 -2.5376 20 1 5.7247 8.6376 -3.5271 21 6 5.4463 10.4228 -2.3747 22 7 5.4775 10.9499 -1.1690 23 14 5.1907 11.5177 -3.8665 24 1 3.7496 11.5385 -4.2241 25 1 5.9769 10.9883 -5.0096 26 1 5.6425 12.8968 -3.5515 27 6 5.9791 6.8075 -1.4426 28 6 4.1728 2.5223 0.0061 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 3.8118 -0.8568 0.0003 33 1 6.2647 -0.7211 -0.0021 34 1 8.1093 -0.3147 -0.8933 35 1 9.4447 0.4559 -0.0041 36 1 8.1101 -0.3151 0.8868 37 1 6.8578 4.0204 -0.8915 38 1 6.8591 4.0197 0.8884 39 1 3.7740 7.0417 0.3515 40 1 4.9207 7.3642 1.6949 41 1 6.0956 9.0532 0.4428 42 1 4.4091 9.3316 -0.0891 43 1 5.3672 11.9068 -1.0551 44 1 5.3285 6.2522 -2.1183 45 1 7.0177 6.6975 -1.7546 46 1 3.5868 3.4295 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223971023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:56 Heat of formation + Delta-G solvation = -108.744949 kcal Electronic energy + Delta-G solvation = -28541.521602 eV Core-core repulsion = 24398.059582 eV Total energy + Delta-G solvation = -4143.462020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93079 -40.14730 -38.43603 -37.59976 -36.47468 -35.85547 -32.67418 -31.77151 -30.87700 -29.12862 -28.31887 -27.62522 -27.06498 -26.02190 -24.20953 -23.82845 -21.96168 -20.90627 -20.18953 -20.03727 -18.40213 -17.90318 -17.24567 -16.85256 -16.55135 -16.51451 -16.20892 -15.97202 -14.99307 -14.93418 -14.62806 -14.41247 -14.17760 -13.98365 -13.81232 -13.58927 -13.36922 -12.98331 -12.73869 -12.40231 -12.35214 -12.22671 -12.02306 -11.64407 -11.48410 -11.42035 -11.12554 -11.09931 -10.99449 -10.82523 -10.70939 -10.65219 -10.27022 -10.05698 -9.73137 -9.62901 -9.33090 -9.01937 -8.54376 -8.48212 -6.75009 -5.69971 -3.02792 0.52816 1.05800 2.35881 2.49824 2.86449 3.44323 3.49058 3.50445 3.50595 3.77112 4.38683 4.51812 4.55389 4.65461 4.70226 4.77629 4.87606 4.94986 4.96432 5.04929 5.12280 5.24758 5.29402 5.43386 5.46731 5.52535 5.55829 5.64948 5.70657 5.79767 5.84525 5.86695 5.96635 6.05938 6.22014 6.37874 6.45651 6.57882 6.63236 6.70275 6.79284 6.94808 7.54092 7.60546 7.61491 7.66824 7.83504 8.31021 9.24108 9.85762 10.53368 11.43279 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002669 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.059936 B =10488.604076 C =12098.281733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.170 4.170 6 C -0.024 4.024 7 C -0.224 4.224 8 C 0.168 3.832 9 O -0.307 6.307 10 C 0.024 3.976 11 C -0.125 4.125 12 C 0.113 3.887 13 O -0.377 6.377 14 C 0.079 3.921 15 H 0.066 0.934 16 C -0.139 4.139 17 C 0.174 3.826 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.116 3.884 28 C 0.010 3.990 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.021 0.979 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -28.044 5.955 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.171 4.171 6 C -0.043 4.043 7 C -0.243 4.243 8 C 0.122 3.878 9 O -0.219 6.219 10 C -0.070 4.070 11 C -0.126 4.126 12 C 0.036 3.964 13 O -0.296 6.296 14 C 0.021 3.979 15 H 0.084 0.916 16 C -0.178 4.178 17 C 0.049 3.951 18 N -0.328 5.328 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.207 1.207 26 H -0.217 1.217 27 C -0.010 4.010 28 C -0.008 4.008 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.039 0.961 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.287 -27.399 5.909 28.030 hybrid contribution 0.039 0.321 -0.794 0.857 sum -0.248 -27.078 5.114 27.558 Atomic orbital electron populations 1.23266 0.76031 1.03564 1.02825 1.86520 1.23532 1.32891 1.84760 1.21084 0.89035 0.81413 0.72921 1.90891 1.66651 1.35845 1.45447 1.18979 0.89106 0.94755 1.14261 1.21187 0.92864 0.97989 0.92219 1.21110 0.95531 0.96441 1.11213 1.19069 0.82594 0.93290 0.92876 1.86088 1.15295 1.33141 1.87424 1.23161 0.97092 0.85184 1.01613 1.19036 0.92794 0.92971 1.07751 1.20944 0.90293 0.83999 1.01158 1.87861 1.32277 1.14271 1.95150 1.23216 0.96798 0.80765 0.97072 0.91646 1.23175 0.99038 0.96620 0.98923 1.21460 0.98960 0.91010 0.83664 1.44367 1.78056 1.04679 1.05705 1.19025 1.43340 0.87558 0.85634 0.90653 1.24832 1.02327 0.96439 0.96852 1.69944 1.55876 1.11042 1.19841 0.86132 0.78008 0.79832 0.81769 1.21486 1.20717 1.21717 1.21732 0.97206 0.87773 0.94315 1.21062 0.93041 0.97410 0.89268 0.91787 0.91738 0.88110 0.84262 0.84441 0.92256 0.87846 0.92296 0.91604 0.91868 0.91017 0.91822 0.95340 0.90905 0.93679 0.94861 0.96149 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.79 9.81 -40.63 -0.40 -4.19 16 3 C 0.51 6.73 7.89 34.49 0.27 7.00 16 4 O -0.50 -8.17 16.13 -19.27 -0.31 -8.48 16 5 C -0.17 -2.09 5.87 -104.97 -0.62 -2.71 16 6 C -0.02 -0.23 9.61 -39.21 -0.38 -0.61 16 7 C -0.22 -1.96 9.01 -39.50 -0.36 -2.31 16 8 C 0.17 1.83 6.67 -39.01 -0.26 1.57 16 9 O -0.31 -3.04 9.90 -18.80 -0.19 -3.23 16 10 C 0.02 0.13 9.81 101.05 0.99 1.12 16 11 C -0.12 -1.64 5.89 -104.54 -0.62 -2.26 16 12 C 0.11 1.61 5.66 36.00 0.20 1.81 16 13 O -0.38 -6.54 8.54 -35.23 -0.30 -6.85 16 14 C 0.08 1.50 3.40 -24.90 -0.08 1.42 16 15 H 0.07 1.14 7.88 -51.93 -0.41 0.74 16 16 C -0.14 -2.81 6.82 -24.47 -0.17 -2.97 16 17 C 0.17 4.36 5.43 -2.41 -0.01 4.35 16 18 N -0.60 -16.14 3.39 -169.94 -0.58 -16.72 16 19 C -0.23 -6.59 10.24 -15.06 -0.15 -6.74 16 20 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 21 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 22 N -0.92 -27.58 10.68 55.49 0.59 -26.99 16 23 Si 0.91 22.62 29.56 -169.99 -5.03 17.59 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.12 2.60 7.02 -3.07 -0.02 2.58 16 28 C 0.01 0.14 8.91 -39.20 -0.35 -0.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 0.99 7.60 -52.49 -0.40 0.59 16 33 H 0.14 0.78 6.28 -52.48 -0.33 0.45 16 34 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 42 H 0.07 2.01 6.95 -51.93 -0.36 1.65 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.03 0.76 8.06 -51.93 -0.42 0.35 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.16 2.53 6.58 -52.49 -0.35 2.18 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -34.52 383.62 -7.82 -42.34 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.82 Total: -2.35 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.57 Total: 3.08 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.02 Total: -43.70 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.20 Total: -22.74 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.52 -7.82 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223971023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.402 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds