Wall clock time and date at job start Tue Mar 31 2020 18:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34751 * 116.99466 * 2 1 4 4 O 1.21504 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.47473 * 119.99696 * 180.02562 * 3 2 1 6 6 C 1.39811 * 120.09340 * 359.97438 * 5 3 2 7 7 C 1.37654 * 119.90524 * 179.97438 * 6 5 3 8 8 C 1.39033 * 120.09399 * 0.02562 * 7 6 5 9 9 O 1.35700 * 119.90632 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99906 * 0.02562 * 9 8 7 11 11 C 1.38990 * 120.18859 * 0.02562 * 8 7 6 12 12 C 1.50696 * 119.95492 * 179.97438 * 11 8 7 13 13 O 1.42898 * 109.47213 * 179.97438 * 12 11 8 14 14 C 1.42898 * 114.00445 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.64038 * 328.31998 * 14 13 12 16 16 C 1.55150 * 110.72643 * 204.97717 * 14 13 12 17 17 C 1.55124 * 101.48860 * 205.96901 * 16 14 13 18 18 N 1.47428 * 104.71992 * 37.29733 * 17 16 14 19 19 C 1.36941 * 125.64344 * 155.82203 * 18 17 16 20 20 H 1.08003 * 119.99654 * 190.44130 * 19 18 17 21 21 C 1.38811 * 120.00604 * 10.43256 * 19 18 17 22 22 N 1.31621 * 119.99472 * 9.07328 * 21 19 18 23 23 Si 1.86802 * 120.00075 * 189.06828 * 21 19 18 24 24 H 1.48497 * 109.46995 * 84.99393 * 23 21 19 25 25 H 1.48497 * 109.47222 * 324.99067 * 23 21 19 26 26 H 1.48502 * 109.46692 * 204.99429 * 23 21 19 27 27 C 1.47018 * 108.70261 * 335.55012 * 18 17 16 28 28 C 1.37706 * 120.09091 * 0.26847 * 11 8 7 29 29 H 1.08998 * 109.47295 * 299.99571 * 1 2 3 30 30 H 1.09000 * 109.47337 * 60.00257 * 1 2 3 31 31 H 1.09005 * 109.46498 * 180.02562 * 1 2 3 32 32 H 1.08002 * 120.04506 * 359.97438 * 6 5 3 33 33 H 1.08007 * 119.95316 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46932 * 60.00016 * 10 9 8 35 35 H 1.09003 * 109.46885 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47019 * 299.99810 * 10 9 8 37 37 H 1.08997 * 109.47074 * 59.99917 * 12 11 8 38 38 H 1.08992 * 109.47248 * 299.99499 * 12 11 8 39 39 H 1.09006 * 111.00325 * 324.20772 * 16 14 13 40 40 H 1.09003 * 111.00510 * 88.01990 * 16 14 13 41 41 H 1.08991 * 110.50089 * 278.45300 * 17 16 14 42 42 H 1.08999 * 110.34333 * 156.05813 * 17 16 14 43 43 H 0.96997 * 119.99379 * 180.02562 * 22 21 19 44 44 H 1.09003 * 109.87991 * 120.71198 * 27 18 17 45 45 H 1.09003 * 109.88107 * 241.71562 * 27 18 17 46 46 H 1.08001 * 120.04429 * 179.70979 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 0.0005 5 6 3.5364 1.2779 -0.0006 6 6 4.2998 0.1067 -0.0006 7 6 5.6742 0.1833 -0.0016 8 6 6.3033 1.4231 -0.0022 9 8 7.6584 1.4942 -0.0027 10 6 8.3730 0.2567 -0.0032 11 6 5.5482 2.5900 -0.0011 12 6 6.2356 3.9311 -0.0011 13 8 5.2539 4.9695 -0.0005 14 6 5.8031 6.2887 0.0001 15 1 6.7522 6.3095 0.5358 16 6 4.7999 7.3009 0.6134 17 6 5.2367 8.6224 -0.0715 18 7 5.6046 8.2292 -1.4440 19 6 5.6035 9.0533 -2.5376 20 1 5.7247 8.6376 -3.5271 21 6 5.4463 10.4228 -2.3747 22 7 5.4775 10.9499 -1.1690 23 14 5.1907 11.5177 -3.8665 24 1 3.7496 11.5385 -4.2241 25 1 5.9769 10.9883 -5.0096 26 1 5.6425 12.8968 -3.5515 27 6 5.9791 6.8075 -1.4426 28 6 4.1728 2.5223 0.0061 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 3.8118 -0.8568 0.0003 33 1 6.2647 -0.7211 -0.0021 34 1 8.1093 -0.3147 -0.8933 35 1 9.4447 0.4559 -0.0041 36 1 8.1101 -0.3151 0.8868 37 1 6.8578 4.0204 -0.8915 38 1 6.8591 4.0197 0.8884 39 1 3.7740 7.0417 0.3515 40 1 4.9207 7.3642 1.6949 41 1 6.0956 9.0532 0.4428 42 1 4.4091 9.3316 -0.0891 43 1 5.3672 11.9068 -1.0551 44 1 5.3285 6.2522 -2.1183 45 1 7.0177 6.6975 -1.7546 46 1 3.5868 3.4295 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223971023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:55 Heat of formation + Delta-G solvation = -130.240046 kcal Electronic energy + Delta-G solvation = -28542.453699 eV Core-core repulsion = 24398.059582 eV Total energy + Delta-G solvation = -4144.394117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80603 -41.00731 -39.91242 -38.51066 -37.55097 -37.35991 -34.37209 -33.13655 -31.70565 -31.05703 -29.00283 -28.95465 -28.09331 -27.17932 -26.15798 -24.66999 -22.87916 -22.18466 -21.89618 -21.54598 -19.21804 -18.90265 -18.82254 -18.10254 -17.86568 -17.40909 -17.00824 -16.82839 -16.74511 -16.26169 -15.99250 -15.59690 -15.41802 -15.13101 -14.84432 -14.60122 -14.46378 -14.28774 -13.93737 -13.72926 -13.59774 -13.45416 -13.06105 -12.94495 -12.88809 -12.78307 -12.67601 -12.45598 -12.17130 -12.05792 -12.01858 -11.84670 -11.82861 -11.80645 -11.64923 -11.42858 -10.73861 -10.67591 -9.98400 -9.33465 -8.90284 -7.90757 -5.26802 -0.35260 0.21327 1.42386 1.44483 1.48093 1.55795 1.66986 2.22616 2.42702 2.55687 2.63322 3.28799 3.59173 3.66921 3.72968 3.81916 3.83053 4.01073 4.03545 4.16224 4.22032 4.32444 4.33387 4.33882 4.43054 4.46752 4.49599 4.59368 4.62362 4.70658 4.74563 4.80126 4.88292 4.90986 4.96637 5.01974 5.07189 5.14036 5.22767 5.32989 5.40944 5.55246 5.55863 5.66600 6.16438 6.27029 6.28835 6.67033 7.04811 7.71345 8.38190 9.21316 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002669 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.059936 B =10488.604076 C =12098.281733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.511 3.489 4 O -0.545 6.545 5 C -0.188 4.188 6 C -0.008 4.008 7 C -0.211 4.211 8 C 0.175 3.825 9 O -0.324 6.324 10 C 0.012 3.988 11 C -0.146 4.146 12 C 0.111 3.889 13 O -0.385 6.385 14 C 0.096 3.904 15 H 0.088 0.912 16 C -0.126 4.126 17 C 0.180 3.820 18 N -0.624 5.624 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.981 3.019 24 H -0.285 1.285 25 H -0.269 1.269 26 H -0.290 1.290 27 C 0.113 3.887 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.010 0.990 42 H 0.038 0.962 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -31.517 5.969 32.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.359 3.641 4 O -0.437 6.437 5 C -0.189 4.189 6 C -0.026 4.026 7 C -0.229 4.229 8 C 0.127 3.873 9 O -0.236 6.236 10 C -0.082 4.082 11 C -0.147 4.147 12 C 0.035 3.965 13 O -0.304 6.304 14 C 0.038 3.962 15 H 0.106 0.894 16 C -0.164 4.164 17 C 0.055 3.945 18 N -0.351 5.351 19 C -0.378 4.378 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.809 3.191 24 H -0.212 1.212 25 H -0.194 1.194 26 H -0.216 1.216 27 C -0.012 4.012 28 C -0.027 4.027 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.187 0.813 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.028 0.972 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.044 0.956 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.870 -30.936 5.922 31.509 hybrid contribution -0.262 1.233 -0.801 1.493 sum 0.607 -29.703 5.120 30.147 Atomic orbital electron populations 1.23587 0.74443 1.05994 1.02400 1.86507 1.25055 1.31228 1.84058 1.21349 0.89503 0.81498 0.71798 1.90866 1.67634 1.37388 1.47823 1.19020 0.88882 0.95284 1.15716 1.21507 0.93127 0.97927 0.90054 1.21513 0.95387 0.96951 1.09020 1.19098 0.83263 0.93122 0.91782 1.86077 1.14688 1.35907 1.86947 1.23536 0.97465 0.83970 1.03228 1.18958 0.92653 0.93291 1.09784 1.21092 0.89935 0.83784 1.01697 1.87872 1.33476 1.14027 1.95020 1.22944 0.97219 0.81448 0.94622 0.89407 1.22994 0.98791 0.94280 1.00344 1.21248 0.96922 0.92749 0.83574 1.44678 1.78427 1.06202 1.05831 1.19387 1.43481 0.88438 0.86536 0.90596 1.25708 1.02260 0.97736 0.99844 1.70134 1.56562 1.11018 1.21804 0.85062 0.77857 0.77604 0.78589 1.21211 1.19366 1.21586 1.21867 0.97001 0.85628 0.96731 1.20811 0.93426 0.97148 0.91329 0.92165 0.92360 0.84167 0.81275 0.80407 0.90715 0.86419 0.90446 0.91776 0.90520 0.91837 0.88706 0.97180 0.94349 0.94029 0.95822 0.95577 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -6.96 9.81 -56.61 -0.56 -7.51 16 3 C 0.51 13.61 7.89 70.26 0.55 14.16 16 4 O -0.55 -18.79 16.13 19.82 0.32 -18.47 16 5 C -0.19 -4.54 5.87 -20.09 -0.12 -4.66 16 6 C -0.01 -0.13 9.61 22.51 0.22 0.09 16 7 C -0.21 -2.85 9.01 22.32 0.20 -2.65 16 8 C 0.17 3.39 6.67 22.64 0.15 3.54 16 9 O -0.32 -5.50 9.90 -90.20 -0.89 -6.39 16 10 C 0.01 0.08 9.81 113.37 1.11 1.19 16 11 C -0.15 -3.78 5.89 -19.81 -0.12 -3.90 16 12 C 0.11 3.12 5.66 71.23 0.40 3.53 16 13 O -0.39 -13.54 8.54 -148.98 -1.27 -14.81 16 14 C 0.10 3.63 3.40 31.78 0.11 3.74 16 15 H 0.09 2.96 7.88 -2.39 -0.02 2.94 16 16 C -0.13 -5.13 6.82 32.06 0.22 -4.92 16 17 C 0.18 9.36 5.43 86.93 0.47 9.83 16 18 N -0.62 -34.55 3.39 -691.56 -2.35 -36.90 16 19 C -0.25 -14.84 10.24 84.03 0.86 -13.98 16 20 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 21 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 22 N -0.95 -58.49 10.68 21.65 0.23 -58.26 16 23 Si 0.98 47.27 29.56 68.60 2.03 49.30 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 C 0.11 5.18 7.02 86.73 0.61 5.79 16 28 C -0.01 -0.25 8.91 22.52 0.20 -0.05 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.17 1.65 7.60 -2.91 -0.02 1.63 16 33 H 0.18 0.96 6.28 -2.91 -0.02 0.94 16 34 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.27 7.65 -2.39 -0.02 0.26 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 39 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 42 H 0.04 2.22 6.95 -2.39 -0.02 2.21 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 44 H 0.02 1.12 8.06 -2.39 -0.02 1.10 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.13 4.36 6.58 -2.91 -0.02 4.35 16 Total: -1.00 -78.88 383.62 5.02 -73.86 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.98 Total: 9.06 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 6.53 Total: 10.12 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -2.12 Total: -95.16 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -2.40 Total: -47.19 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -78.88 5.02 -73.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223971023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.380 kcal (2) G-P(sol) polarization free energy of solvation -78.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds