Wall clock time and date at job start Tue Mar 31 2020 18:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34748 * 116.99751 * 2 1 4 4 O 1.21510 * 120.00363 * 0.02562 * 3 2 1 5 5 C 1.47392 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.39776 * 120.19812 * 270.00362 * 5 3 2 7 7 C 1.50698 * 120.04979 * 359.97438 * 6 5 3 8 8 O 1.42894 * 109.47104 * 179.72429 * 7 6 5 9 9 C 1.42899 * 114.00294 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.64134 * 328.31626 * 9 8 7 11 11 C 1.55154 * 110.87555 * 205.06818 * 9 8 7 12 12 C 1.55125 * 101.48572 * 205.89627 * 11 9 8 13 13 N 1.47423 * 104.72395 * 37.29433 * 12 11 9 14 14 C 1.36938 * 125.64840 * 155.81746 * 13 12 11 15 15 H 1.08002 * 119.99798 * 193.30965 * 14 13 12 16 16 C 1.38805 * 120.00326 * 13.30689 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47022 * 108.69958 * 335.55457 * 13 12 11 23 23 C 1.37759 * 119.90114 * 179.72573 * 6 5 3 24 24 C 1.38571 * 120.30967 * 0.26837 * 23 6 5 25 25 C 1.38053 * 120.40324 * 0.02562 * 24 23 6 26 26 C 1.38709 * 120.08844 * 0.02562 * 25 24 23 27 27 O 1.35640 * 120.15469 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99858 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47115 * 299.99383 * 1 2 3 31 31 H 1.08994 * 109.47361 * 59.99723 * 1 2 3 32 32 H 1.09003 * 109.46510 * 59.73056 * 7 6 5 33 33 H 1.08992 * 109.47316 * 299.72775 * 7 6 5 34 34 H 1.09001 * 111.00439 * 324.13374 * 11 9 8 35 35 H 1.08997 * 111.00546 * 87.94994 * 11 9 8 36 36 H 1.09002 * 110.50230 * 278.45118 * 12 11 9 37 37 H 1.09005 * 110.34880 * 156.05846 * 12 11 9 38 38 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 39 39 H 1.08999 * 109.88184 * 120.70859 * 22 13 12 40 40 H 1.09000 * 109.87675 * 241.70882 * 22 13 12 41 41 H 1.07995 * 119.84622 * 180.29994 * 23 6 5 42 42 H 1.07998 * 119.79937 * 180.02562 * 24 23 6 43 43 H 1.07995 * 119.95650 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.47186 * 180.02562 * 28 27 26 45 45 H 1.08999 * 109.47473 * 299.99858 * 28 27 26 46 46 H 1.08998 * 109.47301 * 60.00195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2382 1.3143 1.2072 7 6 3.4919 1.2754 2.5158 8 8 4.4246 1.3174 3.5976 9 6 3.8171 1.2845 4.8906 10 1 2.8434 1.7741 4.8702 11 6 4.7394 1.9410 5.9516 12 6 4.2740 1.2286 7.2486 13 7 3.9931 -0.1580 6.8343 14 6 4.0084 -1.2546 7.6544 15 1 4.0026 -2.2472 7.2289 16 6 4.0315 -1.0904 9.0325 17 7 3.5166 -0.0074 9.5749 18 14 4.7933 -2.4066 10.1174 19 1 5.2974 -3.5164 9.2692 20 1 3.7681 -2.9283 11.0566 21 1 5.9192 -1.8216 10.8888 22 6 3.6876 -0.1677 5.3962 23 6 5.6142 1.3807 1.1996 24 6 6.3059 1.4172 -0.0006 25 6 5.6245 1.3879 -1.2009 26 6 4.2390 1.3221 -1.2126 27 8 3.5681 1.2938 -2.3911 28 6 4.3522 1.3352 -3.5850 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9089 0.3562 2.5743 33 1 2.8237 2.1341 2.5787 34 1 5.7881 1.7310 5.7413 35 1 4.5627 3.0149 6.0121 36 1 3.3711 1.6982 7.6391 37 1 5.0664 1.2479 7.9968 38 1 3.0462 0.6355 9.0215 39 1 4.3964 -0.8078 4.8710 40 1 2.6720 -0.5295 5.2355 41 1 6.1564 1.4040 2.1333 42 1 7.3846 1.4688 0.0030 43 1 6.1708 1.4171 -2.1320 44 1 3.6938 1.3070 -4.4533 45 1 4.9378 2.2543 -3.6035 46 1 5.0229 0.4764 -3.6092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224167506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:41 Heat of formation + Delta-G solvation = -107.079409 kcal Electronic energy + Delta-G solvation = -28994.411793 eV Core-core repulsion = 24851.021996 eV Total energy + Delta-G solvation = -4143.389797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12580 -39.87117 -38.82750 -37.77330 -36.52518 -36.06002 -32.74053 -32.09881 -30.88793 -29.16578 -28.12718 -27.78355 -27.31008 -26.09761 -24.16944 -24.13931 -21.75336 -21.07602 -20.38565 -20.17689 -18.53652 -17.80434 -17.58725 -17.20852 -17.17118 -16.32872 -16.15153 -15.89003 -15.45507 -15.21577 -14.98570 -14.30868 -14.19920 -13.91405 -13.78901 -13.54836 -13.16791 -13.12819 -12.98462 -12.85974 -12.33603 -12.27218 -12.02470 -11.91109 -11.82084 -11.47014 -11.39148 -11.15510 -10.97144 -10.77317 -10.67808 -10.58281 -10.46356 -10.05135 -10.00592 -9.61321 -9.43121 -9.06054 -8.55230 -8.40804 -6.94627 -6.08366 -3.10988 0.70708 1.08029 1.90671 2.52650 2.71229 3.33053 3.53199 3.56708 3.65111 3.70530 4.38166 4.42226 4.59695 4.61186 4.72766 4.73280 4.87435 4.92456 4.99147 5.03760 5.09401 5.11689 5.17739 5.22273 5.25959 5.32970 5.36957 5.43551 5.49215 5.55100 5.69136 5.79019 5.99129 6.07748 6.13391 6.21595 6.27855 6.36326 6.37180 6.51795 6.62405 6.90070 6.96129 7.02960 7.42769 7.49077 7.79170 8.49337 9.03316 9.83149 10.36433 11.25270 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002533 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.834346 B =11051.410140 C =11718.090058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.527 3.473 4 O -0.494 6.494 5 C -0.143 4.143 6 C -0.002 4.002 7 C 0.092 3.908 8 O -0.368 6.368 9 C 0.076 3.924 10 H 0.066 0.934 11 C -0.128 4.128 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.334 4.334 15 H 0.067 0.933 16 C -0.027 4.027 17 N -0.923 5.923 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.295 1.295 21 H -0.290 1.290 22 C 0.117 3.883 23 C -0.130 4.130 24 C -0.056 4.056 25 C -0.212 4.212 26 C 0.167 3.833 27 O -0.314 6.314 28 C 0.027 3.973 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.059 0.941 38 H 0.269 0.731 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.149 0.851 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 3.864 -26.430 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.369 3.631 4 O -0.381 6.381 5 C -0.145 4.145 6 C -0.003 4.003 7 C 0.015 3.985 8 O -0.287 6.287 9 C 0.019 3.981 10 H 0.084 0.916 11 C -0.166 4.166 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.461 4.461 15 H 0.085 0.915 16 C -0.228 4.228 17 N -0.564 5.564 18 Si 0.900 3.100 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.216 1.216 22 C -0.009 4.009 23 C -0.148 4.148 24 C -0.074 4.074 25 C -0.231 4.231 26 C 0.121 3.879 27 O -0.227 6.227 28 C -0.067 4.067 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.852 3.666 -24.896 25.233 hybrid contribution -0.805 0.369 -1.809 2.014 sum 1.047 4.035 -26.705 27.029 Atomic orbital electron populations 1.23339 0.76002 1.04008 1.02696 1.86686 1.23561 1.32516 1.83715 1.20921 0.88653 0.81754 0.71732 1.90864 1.66524 1.36119 1.44594 1.17895 0.89399 1.15354 0.91851 1.19475 0.94287 0.95010 0.91491 1.21269 0.91340 1.01486 0.84411 1.87850 1.32373 1.94968 1.13524 1.23240 0.96221 0.97206 0.81463 0.91561 1.22964 0.99858 0.98710 0.95084 1.21611 0.98093 0.85060 0.93335 1.44472 1.81408 1.03689 1.03463 1.19823 1.51376 0.85483 0.89431 0.91499 1.25740 1.00085 1.02686 0.94330 1.70730 1.33994 1.13471 1.38250 0.83462 0.76563 0.74644 0.75322 1.21851 1.22206 1.21622 1.21739 0.97760 0.93938 0.87497 1.20975 0.92848 1.01667 0.99273 1.21202 1.00420 0.94363 0.91394 1.21166 0.92013 1.09902 1.00012 1.18628 0.90397 0.94513 0.84391 1.86029 1.36123 1.87971 1.12609 1.23136 0.97087 1.01719 0.84796 0.87780 0.91597 0.91785 0.91067 0.91314 0.90541 0.91376 0.95502 0.92295 0.91914 0.94506 0.96056 0.83376 0.84766 0.84565 0.87944 0.92231 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.58 10.58 -40.62 -0.43 -5.01 16 3 C 0.53 7.66 5.99 34.46 0.21 7.87 16 4 O -0.49 -8.13 16.90 -19.27 -0.33 -8.46 16 5 C -0.14 -1.95 5.76 -104.86 -0.60 -2.56 16 6 C 0.00 -0.03 5.91 -104.22 -0.62 -0.65 16 7 C 0.09 1.32 5.23 36.00 0.19 1.51 16 8 O -0.37 -6.01 8.55 -35.23 -0.30 -6.31 16 9 C 0.08 1.39 3.39 -24.90 -0.08 1.30 16 10 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 11 C -0.13 -2.38 6.83 -24.47 -0.17 -2.55 16 12 C 0.14 3.41 5.22 -2.41 -0.01 3.40 16 13 N -0.60 -15.74 3.33 -169.94 -0.57 -16.30 16 14 C -0.33 -9.64 10.05 -15.06 -0.15 -9.79 16 15 H 0.07 1.93 7.96 -52.49 -0.42 1.51 16 16 C -0.03 -0.80 5.09 -17.43 -0.09 -0.89 16 17 N -0.92 -28.16 12.82 55.49 0.71 -27.45 16 18 Si 1.07 25.79 30.00 -169.99 -5.10 20.69 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.12 2.56 7.01 -3.07 -0.02 2.53 16 23 C -0.13 -1.55 9.36 -39.63 -0.37 -1.92 16 24 C -0.06 -0.53 10.03 -39.53 -0.40 -0.92 16 25 C -0.21 -1.96 9.03 -39.48 -0.36 -2.31 16 26 C 0.17 1.96 6.70 -38.67 -0.26 1.70 16 27 O -0.31 -3.43 9.95 -18.62 -0.19 -3.61 16 28 C 0.03 0.16 9.81 101.05 0.99 1.15 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.67 6.84 -51.93 -0.36 0.31 16 37 H 0.06 1.51 7.73 -51.93 -0.40 1.11 16 38 H 0.27 8.19 5.83 -40.82 -0.24 7.95 16 39 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.15 1.81 6.99 -52.49 -0.37 1.44 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 46 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -35.32 383.62 -7.84 -43.16 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.75 Total: -1.76 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.68 Total: -0.73 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.15 Total: -43.75 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.24 Total: -23.39 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.10 Total: 20.69 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.32 -7.84 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224167506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.917 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds