Wall clock time and date at job start Tue Mar 31 2020 18:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34748 * 116.99751 * 2 1 4 4 O 1.21510 * 120.00363 * 0.02562 * 3 2 1 5 5 C 1.47392 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.39776 * 120.19812 * 270.00362 * 5 3 2 7 7 C 1.50698 * 120.04979 * 359.97438 * 6 5 3 8 8 O 1.42894 * 109.47104 * 179.72429 * 7 6 5 9 9 C 1.42899 * 114.00294 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.64134 * 328.31626 * 9 8 7 11 11 C 1.55154 * 110.87555 * 205.06818 * 9 8 7 12 12 C 1.55125 * 101.48572 * 205.89627 * 11 9 8 13 13 N 1.47423 * 104.72395 * 37.29433 * 12 11 9 14 14 C 1.36938 * 125.64840 * 155.81746 * 13 12 11 15 15 H 1.08002 * 119.99798 * 193.30965 * 14 13 12 16 16 C 1.38805 * 120.00326 * 13.30689 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47022 * 108.69958 * 335.55457 * 13 12 11 23 23 C 1.37759 * 119.90114 * 179.72573 * 6 5 3 24 24 C 1.38571 * 120.30967 * 0.26837 * 23 6 5 25 25 C 1.38053 * 120.40324 * 0.02562 * 24 23 6 26 26 C 1.38709 * 120.08844 * 0.02562 * 25 24 23 27 27 O 1.35640 * 120.15469 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99858 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47115 * 299.99383 * 1 2 3 31 31 H 1.08994 * 109.47361 * 59.99723 * 1 2 3 32 32 H 1.09003 * 109.46510 * 59.73056 * 7 6 5 33 33 H 1.08992 * 109.47316 * 299.72775 * 7 6 5 34 34 H 1.09001 * 111.00439 * 324.13374 * 11 9 8 35 35 H 1.08997 * 111.00546 * 87.94994 * 11 9 8 36 36 H 1.09002 * 110.50230 * 278.45118 * 12 11 9 37 37 H 1.09005 * 110.34880 * 156.05846 * 12 11 9 38 38 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 39 39 H 1.08999 * 109.88184 * 120.70859 * 22 13 12 40 40 H 1.09000 * 109.87675 * 241.70882 * 22 13 12 41 41 H 1.07995 * 119.84622 * 180.29994 * 23 6 5 42 42 H 1.07998 * 119.79937 * 180.02562 * 24 23 6 43 43 H 1.07995 * 119.95650 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.47186 * 180.02562 * 28 27 26 45 45 H 1.08999 * 109.47473 * 299.99858 * 28 27 26 46 46 H 1.08998 * 109.47301 * 60.00195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2382 1.3143 1.2072 7 6 3.4919 1.2754 2.5158 8 8 4.4246 1.3174 3.5976 9 6 3.8171 1.2845 4.8906 10 1 2.8434 1.7741 4.8702 11 6 4.7394 1.9410 5.9516 12 6 4.2740 1.2286 7.2486 13 7 3.9931 -0.1580 6.8343 14 6 4.0084 -1.2546 7.6544 15 1 4.0026 -2.2472 7.2289 16 6 4.0315 -1.0904 9.0325 17 7 3.5166 -0.0074 9.5749 18 14 4.7933 -2.4066 10.1174 19 1 5.2974 -3.5164 9.2692 20 1 3.7681 -2.9283 11.0566 21 1 5.9192 -1.8216 10.8888 22 6 3.6876 -0.1677 5.3962 23 6 5.6142 1.3807 1.1996 24 6 6.3059 1.4172 -0.0006 25 6 5.6245 1.3879 -1.2009 26 6 4.2390 1.3221 -1.2126 27 8 3.5681 1.2938 -2.3911 28 6 4.3522 1.3352 -3.5850 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.9089 0.3562 2.5743 33 1 2.8237 2.1341 2.5787 34 1 5.7881 1.7310 5.7413 35 1 4.5627 3.0149 6.0121 36 1 3.3711 1.6982 7.6391 37 1 5.0664 1.2479 7.9968 38 1 3.0462 0.6355 9.0215 39 1 4.3964 -0.8078 4.8710 40 1 2.6720 -0.5295 5.2355 41 1 6.1564 1.4040 2.1333 42 1 7.3846 1.4688 0.0030 43 1 6.1708 1.4171 -2.1320 44 1 3.6938 1.3070 -4.4533 45 1 4.9378 2.2543 -3.6035 46 1 5.0229 0.4764 -3.6092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224167506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:40 Heat of formation + Delta-G solvation = -128.949943 kcal Electronic energy + Delta-G solvation = -28995.360171 eV Core-core repulsion = 24851.021996 eV Total energy + Delta-G solvation = -4144.338174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05630 -40.77070 -40.21502 -38.84970 -37.64101 -37.51152 -34.49752 -33.23757 -31.85538 -30.99936 -29.08160 -28.83828 -28.39703 -27.22601 -26.14099 -25.02877 -22.70055 -22.23870 -21.99564 -21.78103 -19.68847 -19.40833 -18.75714 -18.31300 -18.09955 -17.55169 -16.89637 -16.76688 -16.75902 -16.36068 -16.05439 -15.80568 -15.64338 -15.38421 -15.09034 -14.79581 -14.67835 -14.14203 -14.06747 -13.91611 -13.84332 -13.32535 -13.16536 -12.88143 -12.78784 -12.68555 -12.61532 -12.52840 -12.40705 -12.28521 -12.03896 -11.93565 -11.87342 -11.67400 -11.62067 -11.59584 -10.87417 -10.55456 -10.01724 -9.37384 -9.08394 -8.36406 -5.35922 -0.14392 0.24267 0.83682 1.57605 1.62032 1.66248 1.82859 1.96070 2.43041 2.49704 2.64660 3.16038 3.48520 3.49632 3.57741 3.66510 3.84579 3.87725 3.98414 4.00320 4.15240 4.18129 4.19001 4.20813 4.24274 4.33770 4.36604 4.38531 4.40703 4.55829 4.59943 4.66841 4.72470 4.79390 4.83437 4.90048 5.01174 5.02716 5.09695 5.22935 5.32436 5.37171 5.57897 5.60951 6.05024 6.20476 6.28028 6.45105 6.85438 7.66362 8.22300 8.97097 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002533 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.834346 B =11051.410140 C =11718.090058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.358 6.358 3 C 0.528 3.472 4 O -0.525 6.525 5 C -0.172 4.172 6 C -0.020 4.020 7 C 0.093 3.907 8 O -0.364 6.364 9 C 0.092 3.908 10 H 0.080 0.920 11 C -0.111 4.111 12 C 0.147 3.853 13 N -0.625 5.625 14 C -0.348 4.348 15 H 0.060 0.940 16 C -0.078 4.078 17 N -0.948 5.948 18 Si 1.122 2.878 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.114 3.886 23 C -0.142 4.142 24 C -0.044 4.044 25 C -0.200 4.200 26 C 0.161 3.839 27 O -0.338 6.338 28 C 0.015 3.985 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.013 0.987 37 H 0.030 0.970 38 H 0.257 0.743 39 H 0.032 0.968 40 H 0.016 0.984 41 H 0.143 0.857 42 H 0.170 0.830 43 H 0.174 0.826 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 3.751 -28.653 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.372 3.628 4 O -0.414 6.414 5 C -0.174 4.174 6 C -0.021 4.021 7 C 0.016 3.984 8 O -0.283 6.283 9 C 0.033 3.967 10 H 0.098 0.902 11 C -0.149 4.149 12 C 0.021 3.979 13 N -0.354 5.354 14 C -0.476 4.476 15 H 0.078 0.922 16 C -0.273 4.273 17 N -0.591 5.591 18 Si 0.946 3.054 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.012 4.012 23 C -0.160 4.160 24 C -0.062 4.062 25 C -0.219 4.219 26 C 0.115 3.885 27 O -0.251 6.251 28 C -0.078 4.078 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.161 0.839 42 H 0.188 0.812 43 H 0.191 0.809 44 H 0.136 0.864 45 H 0.093 0.907 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.596 3.547 -27.170 27.636 hybrid contribution -1.383 0.370 -1.301 1.934 sum 2.214 3.918 -28.472 28.825 Atomic orbital electron populations 1.23643 0.74331 1.06033 1.02822 1.86678 1.25366 1.32054 1.83281 1.21222 0.89251 0.81603 0.70719 1.90828 1.67327 1.36984 1.46259 1.18034 0.88953 1.17424 0.92968 1.19381 0.95010 0.96982 0.90695 1.21292 0.91279 1.01225 0.84573 1.87844 1.32638 1.94740 1.13039 1.22968 0.96915 0.94458 0.82311 0.90180 1.22830 0.99949 1.00008 0.92135 1.21537 0.96587 0.84547 0.95193 1.44749 1.81675 1.04063 1.04871 1.20077 1.51014 0.86287 0.90265 0.92246 1.27195 1.00019 1.04121 0.96000 1.70842 1.35633 1.14391 1.38214 0.82777 0.75853 0.72747 0.74001 1.19911 1.21585 1.21056 1.21858 0.97097 0.96713 0.85516 1.21064 0.92200 1.02414 1.00344 1.21587 1.02085 0.92205 0.90321 1.21581 0.90983 1.07770 1.01532 1.18834 0.91361 0.94121 0.84221 1.86010 1.37856 1.87756 1.13503 1.23507 0.97758 1.03246 0.83308 0.84836 0.91910 0.91282 0.91698 0.91341 0.90092 0.88068 0.96926 0.95147 0.93180 0.94994 0.96568 0.83883 0.81244 0.80867 0.86383 0.90696 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.57 113.37 1.20 1.66 16 2 O -0.36 -9.51 10.58 -56.58 -0.60 -10.11 16 3 C 0.53 15.66 5.99 70.23 0.42 16.08 16 4 O -0.52 -17.77 16.90 19.80 0.33 -17.43 16 5 C -0.17 -4.66 5.76 -20.02 -0.12 -4.77 16 6 C -0.02 -0.54 5.91 -19.61 -0.12 -0.66 16 7 C 0.09 2.69 5.23 71.24 0.37 3.06 16 8 O -0.36 -11.61 8.55 -148.98 -1.27 -12.88 16 9 C 0.09 3.27 3.39 31.78 0.11 3.38 16 10 H 0.08 2.66 7.88 -2.39 -0.02 2.64 16 11 C -0.11 -4.03 6.83 32.06 0.22 -3.81 16 12 C 0.15 7.06 5.22 86.93 0.45 7.51 16 13 N -0.63 -33.38 3.33 -691.57 -2.30 -35.68 16 14 C -0.35 -20.54 10.05 84.03 0.84 -19.69 16 15 H 0.06 3.50 7.96 -2.91 -0.02 3.48 16 16 C -0.08 -4.58 5.09 84.86 0.43 -4.15 16 17 N -0.95 -59.15 12.82 21.65 0.28 -58.87 16 18 Si 1.12 52.30 30.00 68.60 2.06 54.35 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 C 0.11 5.04 7.01 86.73 0.61 5.65 16 23 C -0.14 -3.18 9.36 22.24 0.21 -2.98 16 24 C -0.04 -0.69 10.03 22.31 0.22 -0.47 16 25 C -0.20 -3.02 9.03 22.34 0.20 -2.82 16 26 C 0.16 3.53 6.70 22.86 0.15 3.68 16 27 O -0.34 -6.84 9.95 -89.53 -0.89 -7.73 16 28 C 0.02 0.13 9.81 113.37 1.11 1.25 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.01 0.66 6.84 -2.39 -0.02 0.64 16 37 H 0.03 1.61 7.73 -2.38 -0.02 1.59 16 38 H 0.26 16.21 5.83 -92.71 -0.54 15.67 16 39 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.14 3.30 6.99 -2.91 -0.02 3.28 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.17 1.25 6.30 -2.91 -0.02 1.23 16 44 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 46 H 0.08 0.42 7.66 -2.39 -0.02 0.40 16 Total: -1.00 -79.07 383.62 5.14 -73.93 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.21 Total: 11.50 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.32 Total: 2.92 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -2.02 Total: -94.56 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.43 Total: -48.16 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.06 Total: 54.35 kcal Total: -79.07 5.14 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224167506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.017 kcal (2) G-P(sol) polarization free energy of solvation -79.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds