Wall clock time and date at job start Tue Mar 31 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34750 * 116.99943 * 2 1 4 4 O 1.21506 * 120.00120 * 359.97438 * 3 2 1 5 5 C 1.47407 * 119.99746 * 180.02562 * 3 2 1 6 6 C 1.39771 * 120.19089 * 269.99557 * 5 3 2 7 7 C 1.50700 * 120.05456 * 359.97438 * 6 5 3 8 8 O 1.42897 * 109.47460 * 180.02562 * 7 6 5 9 9 C 1.42897 * 114.00191 * 180.02562 * 8 7 6 10 10 H 1.09004 * 110.64209 * 29.29688 * 9 8 7 11 11 C 1.55150 * 110.72174 * 152.44195 * 9 8 7 12 12 C 1.55382 * 101.36841 * 153.94645 * 11 9 8 13 13 N 1.47432 * 104.87293 * 323.01520 * 12 11 9 14 14 C 1.36936 * 125.64638 * 204.09523 * 13 12 11 15 15 H 1.07999 * 119.99474 * 169.98851 * 14 13 12 16 16 C 1.38805 * 120.00304 * 349.98822 * 14 13 12 17 17 N 1.31623 * 120.00222 * 350.41560 * 16 14 13 18 18 Si 1.86802 * 119.99998 * 170.42335 * 16 14 13 19 19 H 1.48500 * 109.47491 * 94.13811 * 18 16 14 20 20 H 1.48500 * 109.47155 * 214.13811 * 18 16 14 21 21 H 1.48500 * 109.46835 * 334.13569 * 18 16 14 22 22 C 1.47020 * 108.70221 * 24.13250 * 13 12 11 23 23 C 1.37764 * 119.89813 * 180.25532 * 6 5 3 24 24 C 1.38570 * 120.30891 * 359.44974 * 23 6 5 25 25 C 1.38058 * 120.40021 * 0.55111 * 24 23 6 26 26 C 1.38708 * 120.08940 * 359.72572 * 25 24 23 27 27 O 1.35634 * 120.15131 * 179.97438 * 26 25 24 28 28 C 1.42894 * 117.00185 * 0.02905 * 27 26 25 29 29 H 1.08994 * 109.47515 * 300.00484 * 1 2 3 30 30 H 1.09010 * 109.46972 * 60.00539 * 1 2 3 31 31 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46774 * 60.00106 * 7 6 5 33 33 H 1.08997 * 109.47203 * 300.00736 * 7 6 5 34 34 H 1.09003 * 111.00229 * 272.11706 * 11 9 8 35 35 H 1.09003 * 111.00799 * 35.96512 * 11 9 8 36 36 H 1.09000 * 110.34838 * 204.16418 * 12 11 9 37 37 H 1.08997 * 110.44428 * 81.91506 * 12 11 9 38 38 H 0.96994 * 120.00385 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.88265 * 239.52399 * 22 13 12 40 40 H 1.08998 * 109.88321 * 118.35700 * 22 13 12 41 41 H 1.08000 * 119.84432 * 179.69800 * 23 6 5 42 42 H 1.08003 * 119.79838 * 180.26188 * 24 23 6 43 43 H 1.07998 * 119.95230 * 179.70466 * 25 24 23 44 44 H 1.09002 * 109.47522 * 179.97438 * 28 27 26 45 45 H 1.09002 * 109.47372 * 299.99561 * 28 27 26 46 46 H 1.09000 * 109.47341 * 59.99485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.2382 1.3143 1.2073 7 6 3.4918 1.2756 2.5159 8 8 4.4241 1.3248 3.5977 9 6 3.8164 1.2928 4.8906 10 1 2.8754 0.7433 4.8595 11 6 4.7806 0.6713 5.9352 12 6 4.2754 1.3303 7.2485 13 7 3.9021 2.7036 6.8636 14 6 3.8488 3.7820 7.7059 15 1 3.7222 4.7760 7.3031 16 6 3.9573 3.5975 9.0773 17 7 3.9216 2.3827 9.5829 18 14 4.1537 5.0732 10.2056 19 1 2.8207 5.4942 10.7068 20 1 5.0210 4.7064 11.3539 21 1 4.7757 6.1922 9.4532 22 6 3.5958 2.7234 5.4258 23 6 5.6136 1.3917 1.1997 24 6 6.3057 1.4220 -0.0004 25 6 5.6247 1.3865 -1.2007 26 6 4.2395 1.3143 -1.2125 27 8 3.5691 1.2798 -2.3911 28 6 4.3532 1.3205 -3.5849 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9125 0.3543 2.5766 33 1 2.8199 2.1318 2.5764 34 1 4.6717 -0.4127 5.9711 35 1 5.8136 0.9520 5.7291 36 1 5.0706 1.3481 7.9939 37 1 3.4075 0.7951 7.6337 38 1 3.9970 2.2538 10.5412 39 1 4.2626 3.4175 4.9142 40 1 2.5585 3.0209 5.2718 41 1 6.1552 1.4249 2.1335 42 1 7.3843 1.4784 0.0033 43 1 6.1711 1.4152 -2.1318 44 1 3.6952 1.2862 -4.4533 45 1 4.9354 2.2418 -3.6061 46 1 5.0274 0.4642 -3.6063 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224167507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:45 Heat of formation + Delta-G solvation = -126.519778 kcal Electronic energy + Delta-G solvation = -28924.256951 eV Core-core repulsion = 24780.024156 eV Total energy + Delta-G solvation = -4144.232794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02447 -40.73974 -40.06430 -38.74523 -37.56764 -37.35740 -34.31773 -33.20747 -31.84667 -30.97205 -28.99784 -28.80395 -28.37641 -27.23434 -26.16242 -24.99541 -22.65160 -22.22574 -21.91903 -21.68113 -19.41276 -18.95358 -18.69186 -18.24373 -18.05202 -17.48551 -16.82020 -16.78725 -16.68963 -16.47665 -16.21423 -15.85599 -15.57248 -15.33047 -14.77307 -14.64786 -14.32180 -14.12066 -14.04170 -13.75720 -13.61422 -13.43943 -13.10217 -12.93098 -12.84593 -12.73272 -12.67610 -12.52597 -12.33430 -12.10408 -12.01683 -12.00372 -11.90169 -11.81890 -11.60590 -11.44527 -10.76474 -10.70498 -9.98159 -9.34465 -8.90563 -7.91038 -5.26532 -0.11071 0.27256 0.87354 1.45525 1.47092 1.57199 1.64486 2.00427 2.44206 2.52302 2.56889 3.28675 3.54591 3.61503 3.66455 3.79818 3.90650 3.99998 4.02357 4.13014 4.21510 4.22597 4.23935 4.27068 4.27968 4.37847 4.40114 4.41437 4.61770 4.64172 4.69255 4.73962 4.75558 4.92077 4.95468 5.03787 5.05001 5.12865 5.35751 5.40731 5.41589 5.56531 5.60867 5.68215 6.12968 6.19256 6.22937 6.48847 7.05301 7.71368 8.37541 9.21005 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.002485 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.508674 B =11265.775875 C =11885.321658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.355 6.355 3 C 0.528 3.472 4 O -0.527 6.527 5 C -0.171 4.171 6 C -0.020 4.020 7 C 0.092 3.908 8 O -0.366 6.366 9 C 0.092 3.908 10 H 0.082 0.918 11 C -0.121 4.121 12 C 0.178 3.822 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.075 0.925 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.271 1.271 22 C 0.112 3.888 23 C -0.142 4.142 24 C -0.045 4.045 25 C -0.201 4.201 26 C 0.161 3.839 27 O -0.338 6.338 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.006 0.994 38 H 0.251 0.749 39 H 0.029 0.971 40 H 0.017 0.983 41 H 0.143 0.857 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -8.571 -28.210 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.372 3.628 4 O -0.416 6.416 5 C -0.173 4.173 6 C -0.020 4.020 7 C 0.016 3.984 8 O -0.285 6.285 9 C 0.034 3.966 10 H 0.100 0.900 11 C -0.159 4.159 12 C 0.053 3.947 13 N -0.350 5.350 14 C -0.378 4.378 15 H 0.093 0.907 16 C -0.254 4.254 17 N -0.594 5.594 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.214 1.214 21 H -0.196 1.196 22 C -0.013 4.013 23 C -0.160 4.160 24 C -0.063 4.063 25 C -0.219 4.219 26 C 0.114 3.886 27 O -0.251 6.251 28 C -0.078 4.078 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.155 0.845 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.024 0.976 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.161 0.839 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.233 -8.248 -28.109 29.379 hybrid contribution -0.728 0.994 0.972 1.569 sum 1.504 -7.254 -27.137 28.131 Atomic orbital electron populations 1.23651 0.74367 1.06121 1.02723 1.86665 1.25294 1.31800 1.83315 1.21225 0.89223 0.81647 0.70705 1.90843 1.67358 1.37180 1.46232 1.18041 0.88916 1.17416 0.92945 1.19406 0.94977 0.96830 0.90786 1.21305 0.91268 1.01287 0.84564 1.87853 1.32599 1.94867 1.13165 1.22999 0.96884 0.94698 0.82031 0.89990 1.23037 0.99137 1.00383 0.93347 1.21326 0.96645 0.83494 0.93261 1.44661 1.79668 1.06592 1.04102 1.19373 1.43602 0.86862 0.87988 0.90729 1.25672 1.02207 0.99645 0.97886 1.70128 1.56856 1.21053 1.11404 0.85059 0.77471 0.78551 0.78173 1.21199 1.21438 1.19565 1.21850 0.97012 0.96905 0.85575 1.21069 0.92290 1.02370 1.00309 1.21582 1.02055 0.92267 0.90352 1.21572 0.91025 1.07845 1.01490 1.18828 0.91346 0.94185 0.84229 1.86006 1.37865 1.87758 1.13494 1.23501 0.97755 1.03215 0.83334 0.91966 0.91602 0.84473 0.90295 0.92621 0.88430 0.90760 0.93992 0.97588 0.93991 0.95282 0.96462 0.83921 0.81325 0.80929 0.86390 0.90903 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -8.95 10.58 -56.60 -0.60 -9.55 16 3 C 0.53 15.63 5.99 70.24 0.42 16.05 16 4 O -0.53 -18.40 16.90 19.82 0.33 -18.06 16 5 C -0.17 -4.66 5.76 -20.02 -0.12 -4.77 16 6 C -0.02 -0.53 5.91 -19.61 -0.12 -0.64 16 7 C 0.09 2.68 5.21 71.24 0.37 3.05 16 8 O -0.37 -11.86 8.54 -148.98 -1.27 -13.13 16 9 C 0.09 3.33 3.41 31.78 0.11 3.44 16 10 H 0.08 2.73 7.85 -2.38 -0.02 2.71 16 11 C -0.12 -4.52 6.85 32.15 0.22 -4.30 16 12 C 0.18 8.86 5.44 87.02 0.47 9.34 16 13 N -0.62 -33.64 3.40 -691.02 -2.35 -35.99 16 14 C -0.25 -14.59 10.24 84.03 0.86 -13.73 16 15 H 0.07 4.25 7.85 -2.91 -0.02 4.22 16 16 C -0.06 -3.51 5.40 84.86 0.46 -3.06 16 17 N -0.95 -57.34 10.68 21.65 0.23 -57.11 16 18 Si 0.98 46.52 29.56 68.60 2.03 48.55 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.11 5.05 7.02 86.73 0.61 5.66 16 23 C -0.14 -3.24 9.36 22.24 0.21 -3.03 16 24 C -0.04 -0.72 10.03 22.31 0.22 -0.49 16 25 C -0.20 -3.08 9.03 22.34 0.20 -2.88 16 26 C 0.16 3.54 6.70 22.86 0.15 3.69 16 27 O -0.34 -6.88 9.94 -89.47 -0.89 -7.77 16 28 C 0.02 0.14 9.81 113.37 1.11 1.25 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.09 8.11 -2.39 -0.02 2.07 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.04 2.33 6.94 -2.39 -0.02 2.31 16 37 H 0.01 0.33 8.07 -2.39 -0.02 0.31 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.03 1.33 8.06 -2.39 -0.02 1.31 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.14 3.37 6.99 -2.91 -0.02 3.35 16 42 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.17 1.30 6.30 -2.91 -0.02 1.28 16 44 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 46 H 0.08 0.41 7.66 -2.39 -0.02 0.39 16 Total: -1.00 -77.43 384.62 4.85 -72.58 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.98 Total: 9.29 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.39 Total: 11.20 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.12 Total: -93.10 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -2.43 Total: -48.52 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.43 4.85 -72.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224167507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.943 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds