Wall clock time and date at job start Tue Mar 31 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34743 * 117.00022 * 2 1 4 4 O 1.21505 * 120.00550 * 359.97438 * 3 2 1 5 5 C 1.47404 * 120.00024 * 179.97438 * 3 2 1 6 6 C 1.39772 * 120.19908 * 270.00309 * 5 3 2 7 7 C 1.50693 * 120.04726 * 359.97211 * 6 5 3 8 8 O 1.42908 * 109.47081 * 180.02562 * 7 6 5 9 9 C 1.42900 * 113.99997 * 180.02562 * 8 7 6 10 10 C 1.53514 * 114.16934 * 150.00256 * 9 8 7 11 11 N 1.47483 * 87.92777 * 87.81254 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.37765 * 119.90059 * 180.25459 * 6 5 3 23 23 C 1.38558 * 120.30824 * 359.44083 * 22 6 5 24 24 C 1.38054 * 120.40589 * 0.55998 * 23 22 6 25 25 C 1.38706 * 120.08637 * 359.72123 * 24 23 22 26 26 O 1.35646 * 120.15509 * 180.02562 * 25 24 23 27 27 C 1.42897 * 116.99694 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.46614 * 60.00133 * 1 2 3 29 29 H 1.08998 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46760 * 300.00594 * 1 2 3 31 31 H 1.09003 * 109.47110 * 60.00870 * 7 6 5 32 32 H 1.08996 * 109.47699 * 300.00256 * 7 6 5 33 33 H 1.09004 * 113.25466 * 17.04971 * 9 8 7 34 34 H 1.09000 * 113.47331 * 333.04932 * 10 9 8 35 35 H 1.08997 * 113.47627 * 202.58057 * 10 9 8 36 36 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 37 37 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 40 40 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 41 41 H 1.07996 * 119.84338 * 179.69937 * 22 6 5 42 42 H 1.08000 * 119.80104 * 180.26210 * 23 22 6 43 43 H 1.08003 * 119.95647 * 179.74485 * 24 23 22 44 44 H 1.08991 * 109.47924 * 300.00448 * 27 26 25 45 45 H 1.09007 * 109.47031 * 60.00519 * 27 26 25 46 46 H 1.09001 * 109.46784 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2777 0.0006 6 6 4.2374 1.3147 1.2089 7 6 3.4901 1.2764 2.5168 8 8 4.4217 1.3259 3.5994 9 6 3.8130 1.2942 4.8919 10 6 4.6777 0.6390 5.9780 11 7 5.2861 1.9612 6.2160 12 6 5.4625 2.2085 7.6533 13 6 6.3012 3.4447 7.8510 14 1 6.6671 3.9919 6.9947 15 6 6.6025 3.8769 9.1253 16 7 6.1575 3.2104 10.1681 17 14 7.6428 5.4089 9.3704 18 1 7.8211 5.6589 10.8233 19 1 8.9704 5.2126 8.7348 20 1 6.9633 6.5734 8.7479 21 6 4.0325 2.5642 5.7259 22 6 5.6129 1.3921 1.2022 23 6 6.3058 1.4219 0.0027 24 6 5.6257 1.3860 -1.1981 25 6 4.2405 1.3138 -1.2109 26 8 3.5709 1.2780 -2.3900 27 6 4.3560 1.3184 -3.5833 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.9108 0.3550 2.5775 32 1 2.8182 2.1326 2.5767 33 1 2.7803 0.9457 4.8729 34 1 5.3797 -0.0981 5.5881 35 1 4.1021 0.2669 6.8255 36 1 5.9614 1.3539 8.1104 37 1 4.4878 2.3522 8.1195 38 1 6.3698 3.5142 11.0645 39 1 3.2848 2.7058 6.5063 40 1 4.1877 3.4586 5.1226 41 1 6.1538 1.4255 2.1364 42 1 7.3843 1.4783 0.0071 43 1 6.1729 1.4137 -2.1289 44 1 4.9375 2.2399 -3.6047 45 1 5.0307 0.4625 -3.6035 46 1 3.6985 1.2829 -4.4520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224169001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:09 Heat of formation + Delta-G solvation = -88.481405 kcal Electronic energy + Delta-G solvation = -28526.916740 eV Core-core repulsion = 24384.333413 eV Total energy + Delta-G solvation = -4142.583327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13185 -39.88773 -39.60681 -38.09352 -36.57392 -36.30041 -32.87350 -32.32710 -30.94093 -29.07545 -28.15451 -27.74752 -26.28808 -25.40695 -24.94372 -24.13460 -21.79059 -21.65060 -21.00401 -19.43032 -18.55338 -17.79457 -17.19384 -17.11928 -16.46506 -16.16305 -16.12535 -15.83891 -15.55843 -15.42500 -15.11087 -14.60192 -14.28638 -14.00830 -13.78708 -13.76063 -13.36013 -13.18683 -12.95672 -12.87344 -12.38493 -12.17730 -12.06750 -11.88194 -11.84786 -11.52398 -11.42436 -11.15772 -11.04124 -11.02842 -10.76487 -10.65836 -10.50040 -10.21469 -9.64052 -9.41379 -9.22894 -9.03398 -8.52244 -8.39891 -7.78212 -6.00714 -4.01362 0.72931 1.11169 1.88146 2.49017 2.71984 3.35667 3.36503 3.39453 3.43650 3.54900 4.39261 4.41214 4.46053 4.59047 4.74772 4.75581 4.83493 4.84953 4.88108 4.93181 4.94204 5.04981 5.13930 5.17597 5.24320 5.25323 5.31099 5.33546 5.34806 5.50669 5.79243 5.84275 5.98408 6.02138 6.13784 6.21004 6.24588 6.29650 6.41120 6.43806 6.70136 6.92262 7.18762 7.37132 7.46104 7.69624 7.90493 8.14961 8.50535 9.06282 9.62520 11.10410 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.002360 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.759321 B =11863.544792 C =12862.491729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.350 6.350 3 C 0.527 3.473 4 O -0.492 6.492 5 C -0.144 4.144 6 C -0.005 4.005 7 C 0.091 3.909 8 O -0.341 6.341 9 C 0.054 3.946 10 C -0.005 4.005 11 N -0.455 5.455 12 C 0.156 3.844 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.008 4.008 22 C -0.127 4.127 23 C -0.055 4.055 24 C -0.211 4.211 25 C 0.165 3.835 26 O -0.315 6.315 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.002 0.998 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -8.947 -26.720 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.379 6.379 5 C -0.146 4.146 6 C -0.005 4.005 7 C 0.014 3.986 8 O -0.259 6.259 9 C -0.004 4.004 10 C -0.135 4.135 11 N -0.178 5.178 12 C 0.030 3.970 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.728 3.272 18 H -0.214 1.214 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.073 4.073 24 C -0.230 4.230 25 C 0.119 3.881 26 O -0.228 6.228 27 C -0.067 4.067 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.417 -8.459 -26.852 29.113 hybrid contribution -0.414 0.738 0.668 1.078 sum -7.832 -7.721 -26.183 28.399 Atomic orbital electron populations 1.23325 0.76146 1.03865 1.02733 1.86681 1.23445 1.32666 1.83872 1.20945 0.88673 0.81691 0.71753 1.90872 1.66506 1.36093 1.44415 1.17877 0.89226 1.15583 0.91866 1.19425 0.94282 0.95454 0.91341 1.21313 0.91438 1.01237 0.84622 1.87933 1.31084 1.94452 1.12429 1.23350 0.95509 0.98752 0.82828 1.24033 0.97241 0.96547 0.95646 1.69040 1.26266 1.01725 1.20775 1.20288 0.96453 0.97795 0.82438 1.21074 1.31420 1.09570 0.92048 0.91889 1.25011 0.96383 0.97444 0.95948 1.69947 1.46105 1.39914 0.98195 0.86531 0.80857 0.83122 0.76738 1.21384 1.20131 1.20267 1.24232 0.93950 0.97857 0.97738 1.21054 0.92866 1.01009 0.99524 1.21231 1.00560 0.94135 0.91364 1.21181 0.92031 1.09755 1.00036 1.18621 0.90407 0.94695 0.84367 1.86021 1.36168 1.88009 1.12617 1.23133 0.97051 1.01761 0.84795 0.91768 0.87879 0.91669 0.91317 0.91192 0.90925 0.89976 0.91105 0.95330 0.97995 0.92910 0.91111 0.90160 0.82987 0.84676 0.84582 0.92190 0.92172 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -4.11 10.58 -40.61 -0.43 -4.54 16 3 C 0.53 7.19 5.99 34.46 0.21 7.40 16 4 O -0.49 -7.79 16.90 -19.27 -0.33 -8.12 16 5 C -0.14 -1.89 5.76 -104.86 -0.60 -2.49 16 6 C 0.00 -0.06 5.91 -104.23 -0.62 -0.68 16 7 C 0.09 1.19 5.20 36.00 0.19 1.38 16 8 O -0.34 -5.33 8.87 -35.23 -0.31 -5.64 16 9 C 0.05 0.85 4.65 -26.20 -0.12 0.73 16 10 C -0.01 -0.09 7.52 -7.53 -0.06 -0.15 16 11 N -0.46 -10.20 6.32 -246.08 -1.55 -11.76 16 12 C 0.16 4.15 4.57 -4.98 -0.02 4.13 16 13 C -0.50 -14.64 9.39 -34.44 -0.32 -14.96 16 14 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 17 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.01 -0.15 7.56 -7.54 -0.06 -0.21 16 22 C -0.13 -1.55 9.36 -39.64 -0.37 -1.92 16 23 C -0.05 -0.54 10.03 -39.53 -0.40 -0.93 16 24 C -0.21 -1.97 9.03 -39.48 -0.36 -2.32 16 25 C 0.17 1.90 6.70 -38.67 -0.26 1.64 16 26 O -0.32 -3.36 9.95 -18.64 -0.19 -3.54 16 27 C 0.03 0.16 9.81 101.05 0.99 1.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.21 7.91 -51.93 -0.41 0.80 16 36 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 37 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.33 7.42 -51.93 -0.39 0.95 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.15 2.00 6.99 -52.49 -0.37 1.63 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.14 0.85 6.30 -52.48 -0.33 0.52 16 44 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 45 H 0.06 0.26 7.66 -51.92 -0.40 -0.14 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -35.14 390.77 -8.88 -44.02 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.85 Total: -2.59 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.83 Total: -4.45 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.82 Total: -38.18 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -1.25 Total: -21.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.14 -8.88 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224169001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.458 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds