Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34743 * 117.00022 * 2 1 4 4 O 1.21505 * 120.00550 * 359.97438 * 3 2 1 5 5 C 1.47404 * 120.00024 * 179.97438 * 3 2 1 6 6 C 1.39772 * 120.19908 * 270.00309 * 5 3 2 7 7 C 1.50693 * 120.04726 * 359.97211 * 6 5 3 8 8 O 1.42908 * 109.47081 * 180.02562 * 7 6 5 9 9 C 1.42900 * 113.99997 * 180.02562 * 8 7 6 10 10 C 1.53514 * 114.16934 * 150.00256 * 9 8 7 11 11 N 1.47483 * 87.92777 * 87.81254 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.37765 * 119.90059 * 180.25459 * 6 5 3 23 23 C 1.38558 * 120.30824 * 359.44083 * 22 6 5 24 24 C 1.38054 * 120.40589 * 0.55998 * 23 22 6 25 25 C 1.38706 * 120.08637 * 359.72123 * 24 23 22 26 26 O 1.35646 * 120.15509 * 180.02562 * 25 24 23 27 27 C 1.42897 * 116.99694 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.46614 * 60.00133 * 1 2 3 29 29 H 1.08998 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46760 * 300.00594 * 1 2 3 31 31 H 1.09003 * 109.47110 * 60.00870 * 7 6 5 32 32 H 1.08996 * 109.47699 * 300.00256 * 7 6 5 33 33 H 1.09004 * 113.25466 * 17.04971 * 9 8 7 34 34 H 1.09000 * 113.47331 * 333.04932 * 10 9 8 35 35 H 1.08997 * 113.47627 * 202.58057 * 10 9 8 36 36 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 37 37 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 40 40 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 41 41 H 1.07996 * 119.84338 * 179.69937 * 22 6 5 42 42 H 1.08000 * 119.80104 * 180.26210 * 23 22 6 43 43 H 1.08003 * 119.95647 * 179.74485 * 24 23 22 44 44 H 1.08991 * 109.47924 * 300.00448 * 27 26 25 45 45 H 1.09007 * 109.47031 * 60.00519 * 27 26 25 46 46 H 1.09001 * 109.46784 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5358 1.2777 0.0006 6 6 4.2374 1.3147 1.2089 7 6 3.4901 1.2764 2.5168 8 8 4.4217 1.3259 3.5994 9 6 3.8130 1.2942 4.8919 10 6 4.6777 0.6390 5.9780 11 7 5.2861 1.9612 6.2160 12 6 5.4625 2.2085 7.6533 13 6 6.3012 3.4447 7.8510 14 1 6.6671 3.9919 6.9947 15 6 6.6025 3.8769 9.1253 16 7 6.1575 3.2104 10.1681 17 14 7.6428 5.4089 9.3704 18 1 7.8211 5.6589 10.8233 19 1 8.9704 5.2126 8.7348 20 1 6.9633 6.5734 8.7479 21 6 4.0325 2.5642 5.7259 22 6 5.6129 1.3921 1.2022 23 6 6.3058 1.4219 0.0027 24 6 5.6257 1.3860 -1.1981 25 6 4.2405 1.3138 -1.2109 26 8 3.5709 1.2780 -2.3900 27 6 4.3560 1.3184 -3.5833 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.9108 0.3550 2.5775 32 1 2.8182 2.1326 2.5767 33 1 2.7803 0.9457 4.8729 34 1 5.3797 -0.0981 5.5881 35 1 4.1021 0.2669 6.8255 36 1 5.9614 1.3539 8.1104 37 1 4.4878 2.3522 8.1195 38 1 6.3698 3.5142 11.0645 39 1 3.2848 2.7058 6.5063 40 1 4.1877 3.4586 5.1226 41 1 6.1538 1.4255 2.1364 42 1 7.3843 1.4783 0.0071 43 1 6.1729 1.4137 -2.1289 44 1 4.9375 2.2399 -3.6047 45 1 5.0307 0.4625 -3.6035 46 1 3.6985 1.2829 -4.4520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224169001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -113.112688 kcal Electronic energy + Delta-G solvation = -28527.984832 eV Core-core repulsion = 24384.333413 eV Total energy + Delta-G solvation = -4143.651419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02184 -41.08975 -40.71089 -39.01599 -37.59266 -37.45035 -34.99829 -33.26571 -31.88025 -30.86224 -28.82135 -28.39538 -27.43566 -26.97574 -26.58205 -24.99026 -23.61088 -22.60382 -21.89778 -20.85903 -19.40492 -18.70053 -18.53302 -18.13504 -18.02502 -17.41294 -17.01679 -16.82802 -16.68938 -16.55929 -16.31371 -15.94831 -15.49517 -15.35644 -15.10353 -14.76616 -14.60974 -14.13337 -13.98485 -13.88483 -13.77932 -13.49001 -13.16095 -13.04283 -12.99222 -12.70822 -12.65704 -12.45231 -12.30789 -12.28298 -12.12324 -11.93572 -11.87424 -11.59780 -11.47889 -11.27134 -10.66295 -10.59956 -9.97156 -9.55047 -9.34476 -8.23044 -6.32941 -0.11011 0.27187 0.88454 1.38859 1.42379 1.50605 1.65495 1.98797 2.39084 2.46203 2.52123 3.08704 3.38744 3.42644 3.61665 3.64940 3.90307 3.96642 4.02611 4.15131 4.21371 4.26072 4.28343 4.30307 4.37136 4.39649 4.40215 4.46459 4.50982 4.64376 4.67797 4.69861 4.71646 4.74464 4.86703 4.98821 5.04300 5.05296 5.13832 5.36239 5.40731 5.58806 5.60339 5.80497 6.08041 6.19162 6.22292 6.49346 6.50634 6.81032 7.36332 8.87732 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016527 B = 0.002360 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.759321 B =11863.544792 C =12862.491729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.355 6.355 3 C 0.531 3.469 4 O -0.525 6.525 5 C -0.169 4.169 6 C -0.019 4.019 7 C 0.092 3.908 8 O -0.354 6.354 9 C 0.079 3.921 10 C -0.006 4.006 11 N -0.482 5.482 12 C 0.172 3.828 13 C -0.527 4.527 14 H 0.054 0.946 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.279 1.279 19 H -0.269 1.269 20 H -0.269 1.269 21 C -0.014 4.014 22 C -0.144 4.144 23 C -0.048 4.048 24 C -0.201 4.201 25 C 0.160 3.840 26 O -0.336 6.336 27 C 0.015 3.985 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.002 0.998 37 H -0.016 1.016 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.172 0.828 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -9.206 -28.829 31.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.375 3.625 4 O -0.414 6.414 5 C -0.171 4.171 6 C -0.020 4.020 7 C 0.015 3.985 8 O -0.272 6.272 9 C 0.021 3.979 10 C -0.135 4.135 11 N -0.205 5.205 12 C 0.045 3.955 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.204 1.204 19 H -0.194 1.194 20 H -0.194 1.194 21 C -0.144 4.144 22 C -0.162 4.162 23 C -0.066 4.066 24 C -0.220 4.220 25 C 0.114 3.886 26 O -0.250 6.250 27 C -0.078 4.078 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.020 0.980 37 H 0.001 0.999 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.155 0.845 42 H 0.181 0.819 43 H 0.189 0.811 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.949 -8.745 -28.990 31.068 hybrid contribution -0.596 0.748 1.178 1.518 sum -7.545 -7.996 -27.812 29.907 Atomic orbital electron populations 1.23660 0.74274 1.06104 1.02823 1.86673 1.25358 1.31731 1.83293 1.21120 0.88999 0.81679 0.70749 1.90842 1.67272 1.37117 1.46204 1.18021 0.89111 1.17262 0.92732 1.19415 0.94704 0.96675 0.91172 1.21391 0.91129 1.01811 0.84129 1.87924 1.32240 1.94284 1.12743 1.23124 0.96924 0.95521 0.82361 1.24097 0.97716 0.94802 0.96849 1.68957 1.28909 1.05060 1.17574 1.19955 0.94660 0.95870 0.84988 1.21389 1.32285 1.10702 0.92181 0.92769 1.25918 0.97467 1.00731 0.95504 1.70059 1.47034 1.41521 0.98688 0.85440 0.79119 0.78996 0.77100 1.20370 1.19379 1.19434 1.24290 0.92604 0.99189 0.98312 1.21047 0.92679 1.02402 1.00063 1.21549 1.01944 0.92490 0.90571 1.21545 0.91226 1.07918 1.01273 1.18829 0.91239 0.94201 0.84369 1.86005 1.37769 1.87767 1.13439 1.23497 0.97749 1.03154 0.83413 0.91756 0.84567 0.91590 0.89701 0.91700 0.87023 0.89334 0.90153 0.97976 0.99866 0.92557 0.91019 0.91046 0.84473 0.81858 0.81077 0.90991 0.90401 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.57 113.37 1.20 1.56 16 2 O -0.35 -8.08 10.58 -56.54 -0.60 -8.68 16 3 C 0.53 14.47 5.99 70.24 0.42 14.89 16 4 O -0.53 -16.90 16.90 19.82 0.33 -16.56 16 5 C -0.17 -4.39 5.76 -20.02 -0.12 -4.51 16 6 C -0.02 -0.50 5.91 -19.61 -0.12 -0.62 16 7 C 0.09 2.38 5.20 71.23 0.37 2.75 16 8 O -0.35 -10.90 8.87 -148.98 -1.32 -12.22 16 9 C 0.08 2.42 4.65 30.94 0.14 2.57 16 10 C -0.01 -0.20 7.52 83.58 0.63 0.43 16 11 N -0.48 -22.08 6.32 -932.85 -5.89 -27.97 16 12 C 0.17 9.47 4.57 85.55 0.39 9.86 16 13 C -0.53 -31.47 9.39 25.60 0.24 -31.23 16 14 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 17 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 C -0.01 -0.55 7.56 83.58 0.63 0.08 16 22 C -0.14 -3.45 9.36 22.23 0.21 -3.24 16 23 C -0.05 -0.84 10.03 22.30 0.22 -0.61 16 24 C -0.20 -3.23 9.03 22.34 0.20 -3.02 16 25 C 0.16 3.47 6.70 22.86 0.15 3.63 16 26 O -0.34 -6.66 9.95 -89.61 -0.89 -7.55 16 27 C 0.02 0.14 9.81 113.37 1.11 1.25 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.61 7.88 -2.38 -0.02 2.59 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.08 2.71 7.91 -2.39 -0.02 2.69 16 36 H 0.00 0.13 8.08 -2.38 -0.02 0.11 16 37 H -0.02 -0.94 7.30 -2.39 -0.02 -0.96 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.07 2.75 7.42 -2.39 -0.02 2.73 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.14 3.65 6.99 -2.91 -0.02 3.63 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.17 1.44 6.30 -2.91 -0.02 1.42 16 44 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 45 H 0.08 0.42 7.66 -2.38 -0.02 0.40 16 46 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.24 390.77 1.08 -77.16 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.98 Total: 10.52 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.15 Total: -5.64 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -5.61 Total: -84.71 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.48 Total: -45.02 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.24 1.08 -77.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224169001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.948 kcal (2) G-P(sol) polarization free energy of solvation -78.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds