Wall clock time and date at job start Tue Mar 31 2020 19:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34745 * 117.00538 * 2 1 4 4 O 1.21503 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.47464 * 120.00103 * 180.02562 * 3 2 1 6 6 C 1.39790 * 120.09336 * 0.26958 * 5 3 2 7 7 C 1.37682 * 119.90701 * 180.25563 * 6 5 3 8 8 C 1.39017 * 120.09255 * 359.49432 * 7 6 5 9 9 O 1.35694 * 119.90598 * 180.25739 * 8 7 6 10 10 C 1.42909 * 116.99845 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47180 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47385 * 64.99877 * 11 10 9 13 13 C 1.42896 * 114.00526 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.88569 * 327.57414 * 13 12 11 15 15 C 1.55150 * 111.00751 * 203.64988 * 13 12 11 16 16 C 1.54322 * 102.94442 * 206.42165 * 15 13 12 17 17 N 1.47020 * 107.26943 * 22.19798 * 16 15 13 18 18 C 1.36938 * 125.64781 * 181.09143 * 17 16 15 19 19 H 1.08004 * 120.00031 * 173.80562 * 18 17 16 20 20 C 1.38811 * 120.00381 * 353.81382 * 18 17 16 21 21 N 1.31619 * 119.99550 * 6.80397 * 20 18 17 22 22 Si 1.86799 * 120.00519 * 186.80765 * 20 18 17 23 23 H 1.48499 * 109.46816 * 94.97921 * 22 20 18 24 24 H 1.48498 * 109.47335 * 214.98145 * 22 20 18 25 25 H 1.48502 * 109.46570 * 334.98445 * 22 20 18 26 26 C 1.47425 * 108.70284 * 1.05286 * 17 16 15 27 27 C 1.39016 * 120.18282 * 0.23582 * 8 7 6 28 28 C 1.37674 * 120.09630 * 0.02562 * 27 8 7 29 29 H 1.09004 * 109.46739 * 300.00482 * 1 2 3 30 30 H 1.09000 * 109.46812 * 59.99456 * 1 2 3 31 31 H 1.08991 * 109.47753 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.05103 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.95845 * 179.77600 * 7 6 5 34 34 H 1.08995 * 109.47108 * 299.99828 * 10 9 8 35 35 H 1.09003 * 109.46802 * 59.99410 * 10 9 8 36 36 H 1.09000 * 109.47483 * 185.00224 * 11 10 9 37 37 H 1.09000 * 109.47405 * 305.00249 * 11 10 9 38 38 H 1.08999 * 110.72184 * 324.79302 * 15 13 12 39 39 H 1.09010 * 110.72063 * 88.05996 * 15 13 12 40 40 H 1.09002 * 109.88863 * 262.77538 * 16 15 13 41 41 H 1.09002 * 109.87975 * 141.60867 * 16 15 13 42 42 H 0.97002 * 120.00356 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.36893 * 217.03203 * 26 17 16 44 44 H 1.09005 * 110.45885 * 94.76036 * 26 17 16 45 45 H 1.08005 * 119.94924 * 180.02562 * 27 8 7 46 46 H 1.08004 * 120.04911 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5365 1.2776 -0.0006 6 6 4.2996 0.1064 -0.0068 7 6 5.6743 0.1828 -0.0020 8 6 6.3035 1.4224 -0.0016 9 8 7.6586 1.4933 -0.0021 10 6 8.2400 2.7988 -0.0010 11 6 9.7651 2.6779 -0.0012 12 8 10.1950 2.0736 -1.2227 13 6 11.6113 1.9141 -1.3255 14 1 12.1317 2.7195 -0.8070 15 6 12.0552 1.8289 -2.8097 16 6 13.3624 1.0123 -2.7332 17 7 13.3266 0.2477 -1.4780 18 6 14.3119 -0.5879 -1.0241 19 1 14.2361 -1.0283 -0.0409 20 6 15.4084 -0.8689 -1.8276 21 7 15.5695 -0.2310 -2.9676 22 14 16.6552 -2.1523 -1.2912 23 1 16.3154 -3.4602 -1.9069 24 1 18.0123 -1.7371 -1.7283 25 1 16.6289 -2.2798 0.1881 26 6 12.0546 0.5304 -0.7884 27 6 5.5483 2.5896 -0.0010 28 6 4.1732 2.5221 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 3.8116 -0.8571 -0.0116 33 1 6.2647 -0.7215 -0.0031 34 1 7.9180 3.3406 -0.8903 35 1 7.9187 3.3388 0.8896 36 1 10.2083 3.6696 0.0892 37 1 10.0808 2.0609 0.8401 38 1 11.3079 1.3058 -3.4063 39 1 12.2450 2.8237 -3.2132 40 1 14.2203 1.6848 -2.7334 41 1 13.4234 0.3301 -3.5812 42 1 16.3355 -0.4276 -3.5294 43 1 12.2089 0.5735 0.2897 44 1 11.3111 -0.2279 -1.0344 45 1 6.0411 3.5507 -0.0011 46 1 3.5873 3.4294 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224424729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:57 Heat of formation + Delta-G solvation = -110.287163 kcal Electronic energy + Delta-G solvation = -27483.502712 eV Core-core repulsion = 23339.973817 eV Total energy + Delta-G solvation = -4143.528895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96310 -40.18394 -38.48704 -37.64302 -36.66696 -35.87950 -32.37107 -31.61583 -31.28599 -29.95286 -29.00356 -27.91907 -26.99391 -24.53577 -24.13486 -23.75724 -22.04241 -21.16311 -20.35610 -20.05416 -18.76838 -18.15336 -17.31240 -17.13657 -16.84553 -16.67588 -16.10078 -15.65869 -15.16104 -14.98108 -14.64398 -14.41743 -14.23912 -13.95769 -13.85738 -13.74172 -13.40871 -13.05569 -12.80225 -12.70377 -12.45814 -12.24701 -12.20627 -11.79118 -11.57325 -11.28877 -11.17364 -11.08108 -10.98611 -10.89152 -10.87606 -10.72211 -10.21801 -10.09317 -9.80680 -9.71787 -9.47888 -9.14726 -8.63496 -8.58308 -6.83393 -5.73031 -3.05883 0.42284 0.96550 2.22456 2.35100 2.83350 3.40393 3.42245 3.45358 3.47390 3.73237 4.34307 4.40576 4.48207 4.50973 4.69633 4.72475 4.80121 4.82416 4.88268 5.01774 5.07307 5.12657 5.14016 5.31308 5.38614 5.41933 5.54521 5.61022 5.61787 5.72704 5.74788 5.83456 5.88401 5.93507 6.04908 6.23840 6.27102 6.45369 6.52256 6.67336 6.73355 7.04846 7.41028 7.52990 7.55245 7.62404 7.81456 8.24917 9.20765 9.81182 10.47366 11.39196 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.001723 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.789503 B =16250.174802 C =16928.823487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.515 3.485 4 O -0.514 6.514 5 C -0.180 4.180 6 C -0.019 4.019 7 C -0.167 4.167 8 C 0.178 3.822 9 O -0.293 6.293 10 C 0.060 3.940 11 C 0.062 3.938 12 O -0.373 6.373 13 C 0.071 3.929 14 H 0.066 0.934 15 C -0.137 4.137 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.119 3.881 27 C -0.227 4.227 28 C -0.010 4.010 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.139 0.861 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.109 6.125 6.889 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.361 3.639 4 O -0.404 6.404 5 C -0.181 4.181 6 C -0.037 4.037 7 C -0.185 4.185 8 C 0.131 3.869 9 O -0.204 6.204 10 C -0.015 4.015 11 C -0.015 4.015 12 O -0.292 6.292 13 C 0.013 3.987 14 H 0.084 0.916 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.332 5.332 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.008 4.008 27 C -0.246 4.246 28 C -0.028 4.028 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.157 0.843 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.095 6.128 6.667 27.621 hybrid contribution 0.604 -0.270 0.420 0.784 sum -25.491 5.857 7.087 27.099 Atomic orbital electron populations 1.23279 0.75947 1.03807 1.02627 1.86547 1.23585 1.32744 1.84436 1.21115 0.89081 0.81349 0.72379 1.90830 1.66900 1.36031 1.46642 1.18917 0.88912 0.94963 1.15328 1.21257 0.92620 0.98117 0.91753 1.20510 0.94079 0.96428 1.07520 1.19475 0.82996 0.94175 0.90289 1.86213 1.16453 1.31333 1.86434 1.23040 0.93230 0.83013 1.02227 1.22485 0.91335 0.98252 0.89470 1.87940 1.23263 1.81690 1.36286 1.23449 0.79068 0.97788 0.98370 0.91568 1.22972 0.99917 1.00666 0.93955 1.21180 0.91081 0.92897 0.89535 1.44353 1.15257 1.52367 1.21236 1.19067 0.98011 1.19265 0.99411 0.90389 1.24835 0.98775 0.99962 0.96800 1.69968 1.30462 1.43160 1.13184 0.86103 0.80510 0.81465 0.77728 1.21569 1.21753 1.20628 1.21915 0.89535 0.93752 0.95573 1.21235 0.94301 0.98106 1.10935 1.21000 0.93668 0.96797 0.91317 0.91847 0.91810 0.87915 0.83782 0.83884 0.90662 0.90311 0.91123 0.91999 0.91412 0.91863 0.93728 0.93234 0.93704 0.94616 0.95286 0.84350 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.36 -3.18 9.81 -40.62 -0.40 -3.58 16 3 C 0.51 5.46 7.89 34.49 0.27 5.73 16 4 O -0.51 -6.55 16.13 -19.27 -0.31 -6.86 16 5 C -0.18 -1.77 5.87 -104.98 -0.62 -2.39 16 6 C -0.02 -0.17 9.61 -39.20 -0.38 -0.55 16 7 C -0.17 -1.63 9.97 -39.50 -0.39 -2.03 16 8 C 0.18 1.89 6.70 -39.00 -0.26 1.63 16 9 O -0.29 -3.54 10.09 -23.63 -0.24 -3.77 16 10 C 0.06 0.57 5.12 37.15 0.19 0.76 16 11 C 0.06 0.72 6.20 37.15 0.23 0.95 16 12 O -0.37 -6.00 10.12 -40.08 -0.41 -6.41 16 13 C 0.07 1.29 3.49 -24.59 -0.09 1.21 16 14 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 15 C -0.14 -2.65 6.69 -24.90 -0.17 -2.81 16 16 C 0.18 4.37 5.38 -3.07 -0.02 4.35 16 17 N -0.60 -15.75 3.39 -170.07 -0.58 -16.33 16 18 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 19 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 21 N -0.92 -27.13 10.36 55.49 0.58 -26.55 16 22 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.12 2.56 6.97 -2.53 -0.02 2.54 16 27 C -0.23 -2.04 9.01 -39.50 -0.36 -2.39 16 28 C -0.01 -0.09 9.58 -39.21 -0.38 -0.46 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 1.00 7.60 -52.48 -0.40 0.60 16 33 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.08 0.66 7.65 -51.93 -0.40 0.27 16 35 H 0.08 0.52 7.65 -51.93 -0.40 0.12 16 36 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.04 1.18 7.55 -51.93 -0.39 0.79 16 41 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.14 0.94 6.28 -52.48 -0.33 0.61 16 46 H 0.14 1.16 7.64 -52.48 -0.40 0.76 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -33.92 386.64 -8.59 -42.51 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.88 Total: -2.84 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.16 Total: 0.88 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.00 Total: -42.88 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.35 Total: -20.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.92 -8.59 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224424729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.778 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds