Wall clock time and date at job start Tue Mar 31 2020 19:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34745 * 117.00538 * 2 1 4 4 O 1.21503 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.47464 * 120.00103 * 180.02562 * 3 2 1 6 6 C 1.39790 * 120.09336 * 0.26958 * 5 3 2 7 7 C 1.37682 * 119.90701 * 180.25563 * 6 5 3 8 8 C 1.39017 * 120.09255 * 359.49432 * 7 6 5 9 9 O 1.35694 * 119.90598 * 180.25739 * 8 7 6 10 10 C 1.42909 * 116.99845 * 180.02562 * 9 8 7 11 11 C 1.52991 * 109.47180 * 179.97438 * 10 9 8 12 12 O 1.42902 * 109.47385 * 64.99877 * 11 10 9 13 13 C 1.42896 * 114.00526 * 179.97438 * 12 11 10 14 14 H 1.09007 * 110.88569 * 327.57414 * 13 12 11 15 15 C 1.55150 * 111.00751 * 203.64988 * 13 12 11 16 16 C 1.54322 * 102.94442 * 206.42165 * 15 13 12 17 17 N 1.47020 * 107.26943 * 22.19798 * 16 15 13 18 18 C 1.36938 * 125.64781 * 181.09143 * 17 16 15 19 19 H 1.08004 * 120.00031 * 173.80562 * 18 17 16 20 20 C 1.38811 * 120.00381 * 353.81382 * 18 17 16 21 21 N 1.31619 * 119.99550 * 6.80397 * 20 18 17 22 22 Si 1.86799 * 120.00519 * 186.80765 * 20 18 17 23 23 H 1.48499 * 109.46816 * 94.97921 * 22 20 18 24 24 H 1.48498 * 109.47335 * 214.98145 * 22 20 18 25 25 H 1.48502 * 109.46570 * 334.98445 * 22 20 18 26 26 C 1.47425 * 108.70284 * 1.05286 * 17 16 15 27 27 C 1.39016 * 120.18282 * 0.23582 * 8 7 6 28 28 C 1.37674 * 120.09630 * 0.02562 * 27 8 7 29 29 H 1.09004 * 109.46739 * 300.00482 * 1 2 3 30 30 H 1.09000 * 109.46812 * 59.99456 * 1 2 3 31 31 H 1.08991 * 109.47753 * 180.02562 * 1 2 3 32 32 H 1.08006 * 120.05103 * 0.02562 * 6 5 3 33 33 H 1.08003 * 119.95845 * 179.77600 * 7 6 5 34 34 H 1.08995 * 109.47108 * 299.99828 * 10 9 8 35 35 H 1.09003 * 109.46802 * 59.99410 * 10 9 8 36 36 H 1.09000 * 109.47483 * 185.00224 * 11 10 9 37 37 H 1.09000 * 109.47405 * 305.00249 * 11 10 9 38 38 H 1.08999 * 110.72184 * 324.79302 * 15 13 12 39 39 H 1.09010 * 110.72063 * 88.05996 * 15 13 12 40 40 H 1.09002 * 109.88863 * 262.77538 * 16 15 13 41 41 H 1.09002 * 109.87975 * 141.60867 * 16 15 13 42 42 H 0.97002 * 120.00356 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.36893 * 217.03203 * 26 17 16 44 44 H 1.09005 * 110.45885 * 94.76036 * 26 17 16 45 45 H 1.08005 * 119.94924 * 180.02562 * 27 8 7 46 46 H 1.08004 * 120.04911 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5365 1.2776 -0.0006 6 6 4.2996 0.1064 -0.0068 7 6 5.6743 0.1828 -0.0020 8 6 6.3035 1.4224 -0.0016 9 8 7.6586 1.4933 -0.0021 10 6 8.2400 2.7988 -0.0010 11 6 9.7651 2.6779 -0.0012 12 8 10.1950 2.0736 -1.2227 13 6 11.6113 1.9141 -1.3255 14 1 12.1317 2.7195 -0.8070 15 6 12.0552 1.8289 -2.8097 16 6 13.3624 1.0123 -2.7332 17 7 13.3266 0.2477 -1.4780 18 6 14.3119 -0.5879 -1.0241 19 1 14.2361 -1.0283 -0.0409 20 6 15.4084 -0.8689 -1.8276 21 7 15.5695 -0.2310 -2.9676 22 14 16.6552 -2.1523 -1.2912 23 1 16.3154 -3.4602 -1.9069 24 1 18.0123 -1.7371 -1.7283 25 1 16.6289 -2.2798 0.1881 26 6 12.0546 0.5304 -0.7884 27 6 5.5483 2.5896 -0.0010 28 6 4.1732 2.5221 -0.0004 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 3.8116 -0.8571 -0.0116 33 1 6.2647 -0.7215 -0.0031 34 1 7.9180 3.3406 -0.8903 35 1 7.9187 3.3388 0.8896 36 1 10.2083 3.6696 0.0892 37 1 10.0808 2.0609 0.8401 38 1 11.3079 1.3058 -3.4063 39 1 12.2450 2.8237 -3.2132 40 1 14.2203 1.6848 -2.7334 41 1 13.4234 0.3301 -3.5812 42 1 16.3355 -0.4276 -3.5294 43 1 12.2089 0.5735 0.2897 44 1 11.3111 -0.2279 -1.0344 45 1 6.0411 3.5507 -0.0011 46 1 3.5873 3.4294 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224424729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:56 Heat of formation + Delta-G solvation = -130.471179 kcal Electronic energy + Delta-G solvation = -27484.377957 eV Core-core repulsion = 23339.973817 eV Total energy + Delta-G solvation = -4144.404140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70870 -40.95083 -39.85342 -38.51805 -37.52036 -37.31827 -34.25941 -32.43433 -32.08397 -31.23070 -30.45778 -28.73134 -28.45062 -26.36415 -25.02527 -24.52527 -22.84025 -22.07003 -21.87155 -21.80382 -19.49451 -18.99191 -18.89184 -18.15257 -18.04658 -17.38852 -16.90874 -16.81029 -16.50213 -16.30731 -15.80621 -15.65467 -15.25352 -15.02543 -14.91899 -14.54959 -14.44707 -14.16754 -13.95923 -13.80892 -13.64471 -13.57341 -13.33120 -12.99892 -12.93018 -12.79369 -12.51914 -12.27957 -12.05179 -12.01012 -11.95931 -11.82437 -11.76389 -11.75818 -11.68896 -11.40974 -10.71449 -10.46655 -10.16433 -9.38652 -8.92337 -7.87835 -5.23455 -0.32790 0.27810 1.45011 1.45939 1.48571 1.57228 1.70395 2.11290 2.44670 2.63538 2.70492 3.30893 3.64016 3.71855 3.74291 3.81333 3.86407 3.98661 4.07947 4.12502 4.17171 4.19583 4.30576 4.32928 4.33894 4.37894 4.43860 4.57401 4.65509 4.69821 4.72253 4.80512 4.94414 4.97033 5.02801 5.05731 5.09385 5.17254 5.24239 5.33447 5.43567 5.57005 5.63416 5.71627 6.15060 6.28580 6.36892 6.65406 7.07702 7.73927 8.38937 9.23176 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.001723 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.789503 B =16250.174802 C =16928.823487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.515 3.485 4 O -0.542 6.542 5 C -0.193 4.193 6 C -0.013 4.013 7 C -0.179 4.179 8 C 0.164 3.836 9 O -0.319 6.319 10 C 0.057 3.943 11 C 0.051 3.949 12 O -0.384 6.384 13 C 0.093 3.907 14 H 0.084 0.916 15 C -0.125 4.125 16 C 0.185 3.815 17 N -0.626 5.626 18 C -0.247 4.247 19 H 0.083 0.917 20 C -0.064 4.064 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.115 3.885 27 C -0.221 4.221 28 C -0.014 4.014 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.017 0.983 41 H 0.011 0.989 42 H 0.249 0.751 43 H 0.044 0.956 44 H 0.018 0.982 45 H 0.162 0.838 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.243 6.784 8.065 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.363 3.637 4 O -0.434 6.434 5 C -0.194 4.194 6 C -0.031 4.031 7 C -0.197 4.197 8 C 0.117 3.883 9 O -0.232 6.232 10 C -0.017 4.017 11 C -0.025 4.025 12 O -0.303 6.303 13 C 0.034 3.966 14 H 0.102 0.898 15 C -0.163 4.163 16 C 0.060 3.940 17 N -0.354 5.354 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.191 1.191 26 C -0.011 4.011 27 C -0.239 4.239 28 C -0.032 4.032 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.180 0.820 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.268 6.783 7.869 29.180 hybrid contribution 0.846 -0.505 0.097 0.990 sum -26.423 6.278 7.966 28.302 Atomic orbital electron populations 1.23580 0.74310 1.05873 1.02616 1.86539 1.25237 1.31833 1.83923 1.21271 0.89363 0.81415 0.71667 1.90810 1.67510 1.36924 1.48195 1.19077 0.88784 0.95655 1.15879 1.21389 0.92232 0.98621 0.90854 1.20671 0.94508 0.96637 1.07898 1.19659 0.82702 0.94927 0.90996 1.86172 1.17229 1.32885 1.86871 1.23222 0.91623 0.82518 1.04338 1.22858 0.92982 0.99315 0.87369 1.87923 1.21397 1.82316 1.38676 1.23071 0.80713 0.95984 0.96819 0.89797 1.22796 0.96962 1.01062 0.95473 1.20935 0.93080 0.92061 0.87952 1.44661 1.16312 1.52307 1.22098 1.19465 0.98717 1.19635 0.99774 0.89966 1.25706 1.00964 1.01984 0.97086 1.70180 1.30907 1.44413 1.14250 0.85042 0.77682 0.78479 0.78025 1.21543 1.21857 1.19077 1.22064 0.87465 0.95741 0.95840 1.21424 0.94005 0.98617 1.09888 1.21162 0.93995 0.96947 0.91104 0.91819 0.91922 0.84849 0.82144 0.83699 0.89728 0.86907 0.88177 0.92442 0.91358 0.89028 0.96442 0.97025 0.94219 0.93747 0.96461 0.82034 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -6.02 9.81 -56.56 -0.55 -6.57 16 3 C 0.52 10.59 7.89 70.25 0.55 11.15 16 4 O -0.54 -13.64 16.13 19.83 0.32 -13.32 16 5 C -0.19 -3.62 5.87 -20.09 -0.12 -3.74 16 6 C -0.01 -0.22 9.61 22.51 0.22 0.00 16 7 C -0.18 -3.34 9.97 22.33 0.22 -3.12 16 8 C 0.16 3.24 6.70 22.64 0.15 3.39 16 9 O -0.32 -7.16 10.09 -85.50 -0.86 -8.03 16 10 C 0.06 0.92 5.12 71.98 0.37 1.29 16 11 C 0.05 1.03 6.20 71.98 0.45 1.48 16 12 O -0.38 -11.46 10.12 -144.34 -1.46 -12.92 16 13 C 0.09 3.19 3.49 31.98 0.11 3.30 16 14 H 0.08 2.61 7.90 -2.38 -0.02 2.59 16 15 C -0.12 -4.71 6.69 31.78 0.21 -4.49 16 16 C 0.18 9.29 5.38 86.73 0.47 9.76 16 17 N -0.63 -33.08 3.39 -691.98 -2.35 -35.43 16 18 C -0.25 -14.11 10.26 84.03 0.86 -13.25 16 19 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 20 C -0.06 -3.69 5.48 84.86 0.47 -3.23 16 21 N -0.95 -57.49 10.36 21.65 0.22 -57.26 16 22 Si 0.98 45.97 29.56 68.60 2.03 48.00 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.11 4.88 6.97 86.85 0.61 5.49 16 27 C -0.22 -3.51 9.01 22.32 0.20 -3.31 16 28 C -0.01 -0.24 9.58 22.51 0.22 -0.02 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.13 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.16 2.02 7.60 -2.91 -0.02 1.99 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.08 1.21 7.65 -2.39 -0.02 1.19 16 35 H 0.11 1.04 7.65 -2.39 -0.02 1.03 16 36 H 0.10 1.47 8.11 -2.39 -0.02 1.45 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 40 H 0.02 0.95 7.55 -2.39 -0.02 0.94 16 41 H 0.01 0.66 7.37 -2.39 -0.02 0.64 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.16 1.69 6.28 -2.91 -0.02 1.67 16 46 H 0.15 2.26 7.64 -2.91 -0.02 2.24 16 Total: -1.00 -74.98 386.64 4.50 -70.48 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.98 Total: 8.87 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.18 Total: 6.20 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -2.12 Total: -92.70 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.56 Total: -40.85 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.98 4.50 -70.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224424729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.992 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds