Wall clock time and date at job start Tue Mar 31 2020 19:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34702 * 117.00302 * 2 1 4 4 O 1.21473 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.47738 * 120.00297 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.12233 * 359.97438 * 5 3 2 7 7 C 1.37947 * 119.96398 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21233 * 359.72439 * 7 6 5 9 9 C 1.38818 * 120.24436 * 0.55191 * 8 7 6 10 10 O 1.35918 * 119.98327 * 179.72340 * 9 8 7 11 11 C 1.42900 * 116.99881 * 359.72725 * 10 9 8 12 12 C 1.52992 * 109.47534 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47071 * 64.99504 * 12 11 10 14 14 C 1.42906 * 113.99989 * 180.02562 * 13 12 11 15 15 C 1.53507 * 114.16874 * 210.00451 * 14 13 12 16 16 N 1.47489 * 87.92897 * 220.13926 * 15 14 13 17 17 C 1.46904 * 110.99948 * 138.70309 * 16 15 14 18 18 C 1.50696 * 109.46794 * 169.99650 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47481 * 87.83412 * 27.01215 * 16 15 14 27 27 C 1.38481 * 120.03711 * 359.44871 * 9 8 7 28 28 H 1.09002 * 109.46768 * 300.00092 * 1 2 3 29 29 H 1.09006 * 109.46887 * 59.99517 * 1 2 3 30 30 H 1.08994 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.02166 * 359.97438 * 6 5 3 32 32 H 1.08005 * 119.89382 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.87738 * 180.27326 * 8 7 6 34 34 H 1.09008 * 109.47054 * 59.99507 * 11 10 9 35 35 H 1.09000 * 109.47061 * 300.00307 * 11 10 9 36 36 H 1.09004 * 109.46764 * 304.99960 * 12 11 10 37 37 H 1.09001 * 109.47354 * 185.00115 * 12 11 10 38 38 H 1.08995 * 113.25323 * 342.95576 * 14 13 12 39 39 H 1.08997 * 113.47543 * 105.37735 * 15 14 13 40 40 H 1.08997 * 113.47777 * 334.89811 * 15 14 13 41 41 H 1.09005 * 109.47078 * 49.99935 * 17 16 15 42 42 H 1.09002 * 109.47005 * 290.00151 * 17 16 15 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08990 * 113.47671 * 87.75950 * 26 16 15 45 45 H 1.09001 * 113.47203 * 218.22506 * 26 16 15 46 46 H 1.08004 * 120.10533 * 180.25514 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1079 -0.0006 7 6 5.6795 0.1839 -0.0006 8 6 6.3085 1.4155 -0.0063 9 6 5.5586 2.5837 -0.0006 10 8 6.1823 3.7913 -0.0006 11 6 7.6113 3.7833 -0.0006 12 6 8.1294 5.2229 0.0000 13 8 7.7549 5.8634 1.2213 14 6 8.1919 7.2201 1.3239 15 6 8.4684 7.6843 2.7608 16 7 7.8426 8.9724 2.4080 17 6 6.9832 9.4559 3.4970 18 6 6.5596 10.8735 3.2109 19 1 6.8948 11.3660 2.3100 20 6 5.7431 11.5416 4.0987 21 7 5.3730 12.7786 3.8488 22 14 5.1627 10.6895 5.6565 23 1 3.8809 9.9890 5.3893 24 1 6.1844 9.7036 6.0915 25 1 4.9614 11.6989 6.7270 26 6 7.0538 8.2478 1.3943 27 6 4.1753 2.5194 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8142 -0.8557 0.0003 32 1 6.2686 -0.7214 -0.0002 33 1 7.3872 1.4687 -0.0108 34 1 7.9718 3.2674 -0.8906 35 1 7.9718 3.2675 0.8893 36 1 7.6977 5.7647 -0.8416 37 1 9.2157 5.2182 -0.0896 38 1 8.9789 7.4735 0.6137 39 1 9.5300 7.7668 2.9937 40 1 7.9133 7.1235 3.5127 41 1 7.5348 9.4242 4.4366 42 1 6.1004 8.8210 3.5723 43 1 4.7983 13.2484 4.4732 44 1 6.1213 7.8373 1.7815 45 1 6.9166 8.8077 0.4692 46 1 3.5907 3.4275 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224426305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:49 Heat of formation + Delta-G solvation = -90.315272 kcal Electronic energy + Delta-G solvation = -27434.883224 eV Core-core repulsion = 23292.220375 eV Total energy + Delta-G solvation = -4142.662849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02840 -40.20482 -39.63962 -37.90825 -36.78093 -36.54660 -32.77121 -31.86310 -31.43365 -29.96717 -29.14403 -28.10496 -25.49854 -25.26736 -24.76120 -23.05578 -22.78574 -21.24922 -21.02754 -19.53961 -19.10118 -17.63447 -17.27416 -16.84326 -16.73974 -16.70630 -16.48677 -16.05216 -15.82147 -15.27716 -15.10408 -14.43611 -14.34731 -14.04108 -13.96248 -13.83035 -13.51790 -13.39654 -13.00242 -12.74743 -12.52339 -12.35743 -12.24763 -12.20657 -11.77492 -11.55092 -11.48270 -11.36766 -11.19445 -11.05759 -10.91024 -10.81549 -10.57114 -9.95541 -9.74267 -9.54925 -9.33351 -9.25464 -8.64313 -8.55790 -8.05821 -6.03128 -4.00507 0.24545 0.98809 2.16105 2.16873 2.90396 3.30695 3.35649 3.37680 3.39601 3.53508 4.22774 4.31008 4.43895 4.54862 4.60233 4.69288 4.70973 4.76448 4.79471 4.80867 4.86633 4.90943 4.95171 5.00982 5.11559 5.17412 5.25544 5.27941 5.41993 5.48738 5.74380 5.76232 5.86581 5.89639 5.94952 5.95680 6.04417 6.18219 6.24354 6.27132 6.45310 6.75107 7.02824 7.29550 7.31869 7.35030 7.70175 7.82819 8.64373 9.06735 9.58044 11.10183 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002210 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.773876 B =12669.448406 C =14712.570743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.509 3.491 4 O -0.497 6.497 5 C -0.088 4.088 6 C -0.105 4.105 7 C -0.092 4.092 8 C -0.176 4.176 9 C 0.127 3.873 10 O -0.298 6.298 11 C 0.061 3.939 12 C 0.062 3.938 13 O -0.369 6.369 14 C 0.052 3.948 15 C -0.006 4.006 16 N -0.452 5.452 17 C 0.130 3.870 18 C -0.507 4.507 19 H 0.080 0.920 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.268 1.268 25 H -0.285 1.285 26 C -0.005 4.005 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.028 0.972 42 H -0.002 1.002 43 H 0.264 0.736 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -32.457 -11.086 34.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.353 3.647 4 O -0.385 6.385 5 C -0.090 4.090 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.195 4.195 9 C 0.081 3.919 10 O -0.211 6.211 11 C -0.014 4.014 12 C -0.015 4.015 13 O -0.287 6.287 14 C -0.006 4.006 15 C -0.136 4.136 16 N -0.176 5.176 17 C 0.003 3.997 18 C -0.545 4.545 19 H 0.098 0.902 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.192 1.192 25 H -0.210 1.210 26 C -0.134 4.134 27 C -0.106 4.106 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.596 -31.291 -11.015 33.178 hybrid contribution -0.871 -0.881 1.054 1.627 sum -0.275 -32.172 -9.961 33.680 Atomic orbital electron populations 1.23323 0.75630 1.03878 1.02919 1.86522 1.23797 1.32445 1.84374 1.21123 0.89002 0.81573 0.73007 1.90884 1.66694 1.35959 1.44941 1.18752 0.89018 0.94103 1.07086 1.21332 0.93837 0.97839 0.99290 1.20935 0.94213 0.97390 0.98489 1.21576 1.00686 0.92300 1.04967 1.18776 0.91744 0.84917 0.96439 1.86237 1.21100 1.25783 1.88002 1.22962 0.78578 0.97813 1.02055 1.22537 0.98469 0.91459 0.89075 1.88016 1.78134 1.25761 1.36797 1.24002 0.97646 0.80397 0.98519 1.24108 1.01437 0.92589 0.95438 1.68912 1.21723 1.16666 1.10326 1.20726 0.91026 0.97422 0.90500 1.20951 1.29248 0.95603 1.08679 0.90165 1.24921 0.95815 0.94801 0.97890 1.69896 1.36147 1.10806 1.37041 0.86864 0.79599 0.79648 0.83685 1.20186 1.19236 1.21047 1.24259 0.96478 0.93672 0.98978 1.20487 0.91825 0.97947 1.00350 0.91605 0.91657 0.87825 0.84319 0.84750 0.84694 0.90441 0.90881 0.91873 0.90934 0.88545 0.90040 0.91353 0.95387 0.98396 0.92648 0.90905 0.90117 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.35 -3.17 9.81 -40.50 -0.40 -3.56 16 3 C 0.51 5.71 7.90 34.61 0.27 5.98 16 4 O -0.50 -7.03 16.14 -19.25 -0.31 -7.34 16 5 C -0.09 -0.91 5.87 -105.00 -0.62 -1.53 16 6 C -0.10 -0.81 9.61 -39.16 -0.38 -1.18 16 7 C -0.09 -0.61 10.02 -39.67 -0.40 -1.01 16 8 C -0.18 -1.37 9.03 -39.34 -0.36 -1.72 16 9 C 0.13 1.35 6.68 -39.28 -0.26 1.08 16 10 O -0.30 -3.53 10.10 -24.34 -0.25 -3.78 16 11 C 0.06 0.52 5.12 37.15 0.19 0.71 16 12 C 0.06 0.61 6.16 37.15 0.23 0.83 16 13 O -0.37 -5.28 10.36 -40.09 -0.42 -5.69 16 14 C 0.05 0.80 4.65 -26.20 -0.12 0.68 16 15 C -0.01 -0.11 7.52 -7.54 -0.06 -0.17 16 16 N -0.45 -9.86 6.32 -246.10 -1.55 -11.41 16 17 C 0.13 3.30 3.64 -4.98 -0.02 3.28 16 18 C -0.51 -15.03 9.94 -34.44 -0.34 -15.38 16 19 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 22 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.00 -0.09 7.56 -7.54 -0.06 -0.14 16 27 C -0.09 -1.00 9.53 -39.01 -0.37 -1.37 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 0.81 7.61 -52.48 -0.40 0.41 16 32 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 33 H 0.14 0.72 6.28 -52.49 -0.33 0.40 16 34 H 0.08 0.42 7.64 -51.92 -0.40 0.03 16 35 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.25 7.88 -51.93 -0.41 0.85 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 41 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 42 H 0.00 -0.04 6.73 -51.93 -0.35 -0.39 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 44 H 0.07 1.47 7.42 -51.93 -0.39 1.09 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.15 1.86 7.65 -52.48 -0.40 1.46 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -36.03 389.52 -9.08 -45.12 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.82 Total: -2.44 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.31 Total: -6.73 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.78 Total: -38.94 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.37 Total: -20.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.03 -9.08 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224426305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.198 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds