Wall clock time and date at job start Tue Mar 31 2020 19:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34702 * 117.00302 * 2 1 4 4 O 1.21473 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.47738 * 120.00297 * 180.02562 * 3 2 1 6 6 C 1.39655 * 120.12233 * 359.97438 * 5 3 2 7 7 C 1.37947 * 119.96398 * 180.02562 * 6 5 3 8 8 C 1.38298 * 120.21233 * 359.72439 * 7 6 5 9 9 C 1.38818 * 120.24436 * 0.55191 * 8 7 6 10 10 O 1.35918 * 119.98327 * 179.72340 * 9 8 7 11 11 C 1.42900 * 116.99881 * 359.72725 * 10 9 8 12 12 C 1.52992 * 109.47534 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47071 * 64.99504 * 12 11 10 14 14 C 1.42906 * 113.99989 * 180.02562 * 13 12 11 15 15 C 1.53507 * 114.16874 * 210.00451 * 14 13 12 16 16 N 1.47489 * 87.92897 * 220.13926 * 15 14 13 17 17 C 1.46904 * 110.99948 * 138.70309 * 16 15 14 18 18 C 1.50696 * 109.46794 * 169.99650 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47481 * 87.83412 * 27.01215 * 16 15 14 27 27 C 1.38481 * 120.03711 * 359.44871 * 9 8 7 28 28 H 1.09002 * 109.46768 * 300.00092 * 1 2 3 29 29 H 1.09006 * 109.46887 * 59.99517 * 1 2 3 30 30 H 1.08994 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.02166 * 359.97438 * 6 5 3 32 32 H 1.08005 * 119.89382 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.87738 * 180.27326 * 8 7 6 34 34 H 1.09008 * 109.47054 * 59.99507 * 11 10 9 35 35 H 1.09000 * 109.47061 * 300.00307 * 11 10 9 36 36 H 1.09004 * 109.46764 * 304.99960 * 12 11 10 37 37 H 1.09001 * 109.47354 * 185.00115 * 12 11 10 38 38 H 1.08995 * 113.25323 * 342.95576 * 14 13 12 39 39 H 1.08997 * 113.47543 * 105.37735 * 15 14 13 40 40 H 1.08997 * 113.47777 * 334.89811 * 15 14 13 41 41 H 1.09005 * 109.47078 * 49.99935 * 17 16 15 42 42 H 1.09002 * 109.47005 * 290.00151 * 17 16 15 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08990 * 113.47671 * 87.75950 * 26 16 15 45 45 H 1.09001 * 113.47203 * 218.22506 * 26 16 15 46 46 H 1.08004 * 120.10533 * 180.25514 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4022 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1079 -0.0006 7 6 5.6795 0.1839 -0.0006 8 6 6.3085 1.4155 -0.0063 9 6 5.5586 2.5837 -0.0006 10 8 6.1823 3.7913 -0.0006 11 6 7.6113 3.7833 -0.0006 12 6 8.1294 5.2229 0.0000 13 8 7.7549 5.8634 1.2213 14 6 8.1919 7.2201 1.3239 15 6 8.4684 7.6843 2.7608 16 7 7.8426 8.9724 2.4080 17 6 6.9832 9.4559 3.4970 18 6 6.5596 10.8735 3.2109 19 1 6.8948 11.3660 2.3100 20 6 5.7431 11.5416 4.0987 21 7 5.3730 12.7786 3.8488 22 14 5.1627 10.6895 5.6565 23 1 3.8809 9.9890 5.3893 24 1 6.1844 9.7036 6.0915 25 1 4.9614 11.6989 6.7270 26 6 7.0538 8.2478 1.3943 27 6 4.1753 2.5194 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8142 -0.8557 0.0003 32 1 6.2686 -0.7214 -0.0002 33 1 7.3872 1.4687 -0.0108 34 1 7.9718 3.2674 -0.8906 35 1 7.9718 3.2675 0.8893 36 1 7.6977 5.7647 -0.8416 37 1 9.2157 5.2182 -0.0896 38 1 8.9789 7.4735 0.6137 39 1 9.5300 7.7668 2.9937 40 1 7.9133 7.1235 3.5127 41 1 7.5348 9.4242 4.4366 42 1 6.1004 8.8210 3.5723 43 1 4.7983 13.2484 4.4732 44 1 6.1213 7.8373 1.7815 45 1 6.9166 8.8077 0.4692 46 1 3.5907 3.4275 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224426305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:48 Heat of formation + Delta-G solvation = -116.975445 kcal Electronic energy + Delta-G solvation = -27436.039296 eV Core-core repulsion = 23292.220375 eV Total energy + Delta-G solvation = -4143.818921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79203 -41.15687 -40.84389 -38.67650 -37.71022 -37.52067 -34.98000 -32.54216 -32.32147 -31.46257 -30.17375 -28.67688 -27.16793 -26.80464 -25.53547 -23.81552 -23.45730 -23.10034 -21.75739 -20.98515 -19.81916 -19.03361 -18.43208 -18.27374 -17.54257 -17.49042 -17.21652 -16.95340 -16.73953 -16.46593 -16.35370 -16.10240 -15.29159 -15.03640 -14.87532 -14.82044 -14.65597 -14.52632 -14.29867 -13.98880 -13.74127 -13.49370 -13.27071 -13.09895 -13.05529 -12.89883 -12.60091 -12.46773 -12.19333 -12.04777 -11.90097 -11.87207 -11.80821 -11.70224 -11.58308 -11.42123 -10.84810 -10.42335 -10.20629 -9.78083 -9.32615 -8.34674 -6.38855 -0.46990 0.33890 1.29759 1.31062 1.38302 1.42077 1.48180 2.25136 2.28796 2.53199 2.68850 2.97365 3.32448 3.45610 3.56995 3.71124 3.87059 3.99794 4.04755 4.12739 4.15007 4.22813 4.24483 4.28883 4.30167 4.39593 4.42277 4.48867 4.55736 4.59438 4.65225 4.68011 4.72497 4.75535 4.81954 4.84073 4.93331 5.09487 5.18421 5.24523 5.31347 5.40191 5.60638 5.63930 5.91234 6.24137 6.39548 6.47933 6.54881 6.66426 7.24257 8.82307 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002210 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.773876 B =12669.448406 C =14712.570743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.508 3.492 4 O -0.540 6.540 5 C -0.106 4.106 6 C -0.095 4.095 7 C -0.082 4.082 8 C -0.165 4.165 9 C 0.110 3.890 10 O -0.333 6.333 11 C 0.056 3.944 12 C 0.050 3.950 13 O -0.387 6.387 14 C 0.085 3.915 15 C -0.007 4.007 16 N -0.479 5.479 17 C 0.141 3.859 18 C -0.521 4.521 19 H 0.034 0.966 20 C 0.007 3.993 21 N -0.946 5.946 22 Si 0.949 3.051 23 H -0.270 1.270 24 H -0.249 1.249 25 H -0.274 1.274 26 C -0.018 4.018 27 C -0.118 4.118 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.031 0.969 42 H -0.004 1.004 43 H 0.269 0.731 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -36.870 -10.706 38.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.355 3.645 4 O -0.432 6.432 5 C -0.107 4.107 6 C -0.113 4.113 7 C -0.099 4.099 8 C -0.184 4.184 9 C 0.065 3.935 10 O -0.247 6.247 11 C -0.018 4.018 12 C -0.025 4.025 13 O -0.306 6.306 14 C 0.027 3.973 15 C -0.135 4.135 16 N -0.202 5.202 17 C 0.014 3.986 18 C -0.559 4.559 19 H 0.053 0.947 20 C -0.191 4.191 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.195 1.195 24 H -0.172 1.172 25 H -0.200 1.200 26 C -0.147 4.147 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.194 0.806 33 H 0.184 0.816 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.014 0.986 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.745 -35.747 -10.654 37.402 hybrid contribution -1.517 0.428 0.794 1.765 sum 1.228 -35.319 -9.860 36.690 Atomic orbital electron populations 1.23633 0.74149 1.06179 1.02542 1.86514 1.25256 1.31016 1.83715 1.21454 0.89586 0.81592 0.71881 1.90854 1.67664 1.37405 1.47252 1.18821 0.88640 0.94727 1.08558 1.21656 0.94535 0.97544 0.97598 1.21429 0.93836 0.98464 0.96182 1.21945 1.02060 0.91411 1.02968 1.18907 0.91405 0.85701 0.97534 1.86192 1.23023 1.26991 1.88495 1.23229 0.77090 0.97262 1.04251 1.22936 1.00759 0.91863 0.86990 1.87993 1.78598 1.24812 1.39176 1.23664 0.95682 0.80363 0.97616 1.24169 1.02251 0.90200 0.96920 1.68779 1.21754 1.19721 1.09971 1.20472 0.91536 0.94742 0.91896 1.21197 1.29540 0.97875 1.07267 0.94749 1.25905 0.95781 0.95470 1.01913 1.70047 1.37122 1.12659 1.38783 0.85695 0.79476 0.78909 0.78784 1.19503 1.17224 1.19959 1.24338 0.97245 0.95165 0.97962 1.20414 0.92757 0.97568 1.03018 0.92193 0.91963 0.84100 0.82076 0.80635 0.81627 0.86801 0.89857 0.92280 0.87295 0.85526 0.87573 0.91802 0.95072 0.98618 0.92244 0.92815 0.90636 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.06 9.81 -56.12 -0.55 -6.61 16 3 C 0.51 11.96 7.90 70.33 0.56 12.51 16 4 O -0.54 -16.68 16.14 19.92 0.32 -16.35 16 5 C -0.11 -2.22 5.87 -20.11 -0.12 -2.34 16 6 C -0.10 -1.24 9.61 22.54 0.22 -1.02 16 7 C -0.08 -0.75 10.02 22.21 0.22 -0.52 16 8 C -0.17 -2.02 9.03 22.42 0.20 -1.81 16 9 C 0.11 2.27 6.68 22.47 0.15 2.42 16 10 O -0.33 -7.75 10.10 -87.98 -0.89 -8.64 16 11 C 0.06 0.79 5.12 71.98 0.37 1.16 16 12 C 0.05 0.85 6.16 71.98 0.44 1.30 16 13 O -0.39 -10.35 10.36 -144.34 -1.50 -11.85 16 14 C 0.09 2.44 4.65 30.94 0.14 2.59 16 15 C -0.01 -0.22 7.52 83.57 0.63 0.41 16 16 N -0.48 -20.97 6.32 -932.93 -5.89 -26.86 16 17 C 0.14 7.24 3.64 85.55 0.31 7.55 16 18 C -0.52 -32.07 9.94 25.60 0.25 -31.82 16 19 H 0.03 2.36 8.06 -2.91 -0.02 2.33 16 20 C 0.01 0.42 5.47 84.66 0.46 0.88 16 21 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 22 Si 0.95 46.14 27.47 68.60 1.88 48.03 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 25 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 26 C -0.02 -0.68 7.56 83.58 0.63 -0.05 16 27 C -0.12 -2.92 9.53 22.64 0.22 -2.70 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.16 1.32 7.61 -2.91 -0.02 1.30 16 32 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.17 0.93 6.28 -2.91 -0.02 0.92 16 34 H 0.11 0.75 7.64 -2.38 -0.02 0.74 16 35 H 0.08 0.99 7.67 -2.39 -0.02 0.98 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 2.88 7.88 -2.39 -0.02 2.86 16 39 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.06 2.19 7.91 -2.39 -0.02 2.17 16 41 H 0.03 1.56 7.14 -2.38 -0.02 1.55 16 42 H 0.00 -0.20 6.73 -2.39 -0.02 -0.22 16 43 H 0.27 16.14 8.31 -92.71 -0.77 15.36 16 44 H 0.05 2.27 7.42 -2.39 -0.02 2.25 16 45 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 46 H 0.12 3.44 7.65 -2.91 -0.02 3.42 16 Total: -1.00 -84.65 389.52 0.49 -84.16 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.92 Total: 9.10 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.89 Total: -9.92 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -5.59 Total: -87.92 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -2.61 Total: -43.45 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.03 kcal Total: -84.65 0.49 -84.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224426305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.814 kcal (2) G-P(sol) polarization free energy of solvation -84.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds