Wall clock time and date at job start Tue Mar 31 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99774 * 2 1 4 4 O 1.20826 * 120.00222 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99790 * 180.27436 * 3 2 1 6 6 C 1.50704 * 109.47177 * 179.72869 * 5 3 2 7 7 C 1.38247 * 119.92598 * 269.72782 * 6 5 3 8 8 C 1.38242 * 120.14501 * 179.71963 * 7 6 5 9 9 C 1.38561 * 119.99897 * 0.55723 * 8 7 6 10 10 O 1.35995 * 120.07505 * 179.70370 * 9 8 7 11 11 C 1.42905 * 116.99964 * 0.02562 * 10 9 8 12 12 C 1.39154 * 119.85500 * 359.71497 * 9 8 7 13 13 O 1.35992 * 120.07495 * 180.02562 * 12 9 8 14 14 C 1.42899 * 117.00241 * 186.17904 * 13 12 9 15 15 C 1.53937 * 113.73668 * 255.85833 * 14 13 12 16 16 N 1.48188 * 86.09960 * 221.95463 * 15 14 13 17 17 C 1.46904 * 111.06713 * 137.51791 * 16 15 14 18 18 C 1.50695 * 109.47071 * 70.57083 * 17 16 15 19 19 H 1.08000 * 120.00375 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00111 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47190 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47080 * 119.99859 * 22 20 18 25 25 H 1.48493 * 109.47113 * 239.99709 * 22 20 18 26 26 C 1.47962 * 90.80217 * 24.59998 * 16 15 14 27 27 C 1.38241 * 119.92653 * 89.99951 * 6 5 3 28 28 H 1.09004 * 109.47512 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47687 * 299.99804 * 1 2 3 30 30 H 1.09008 * 109.47054 * 59.99685 * 1 2 3 31 31 H 1.09004 * 109.47307 * 299.72916 * 5 3 2 32 32 H 1.09003 * 109.47024 * 59.72843 * 5 3 2 33 33 H 1.08004 * 119.92693 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00062 * 180.25138 * 8 7 6 35 35 H 1.09002 * 109.47248 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.47126 * 300.00231 * 11 10 9 37 37 H 1.08997 * 109.46752 * 60.00484 * 11 10 9 38 38 H 1.09006 * 112.93437 * 27.42699 * 14 13 12 39 39 H 1.08995 * 113.75565 * 336.23950 * 15 14 13 40 40 H 1.08995 * 113.76043 * 107.60164 * 15 14 13 41 41 H 1.09006 * 109.46661 * 190.56531 * 17 16 15 42 42 H 1.08989 * 109.47455 * 310.56502 * 17 16 15 43 43 H 0.97000 * 119.99829 * 180.02562 * 21 20 18 44 44 H 1.08992 * 113.75920 * 221.08589 * 26 16 15 45 45 H 1.09001 * 113.75918 * 89.71333 * 26 16 15 46 46 H 1.08000 * 119.99948 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0062 6 6 3.9935 2.7201 -0.0117 7 6 4.1897 3.3768 -1.2123 8 6 4.5761 4.7041 -1.2225 9 6 4.7787 5.3759 -0.0277 10 8 5.1646 6.6799 -0.0361 11 6 5.3422 7.2958 -1.3133 12 6 4.5867 4.7133 1.1808 13 8 4.7838 5.3685 2.3560 14 6 4.7012 4.5925 3.5532 15 6 3.3929 4.8003 4.3372 16 7 4.2407 4.8063 5.5526 17 6 3.8219 5.8628 6.4835 18 6 2.4938 5.4965 7.0942 19 1 2.0091 4.5718 6.8182 20 6 1.8970 6.3426 8.0047 21 7 2.4869 7.4690 8.3405 22 14 0.2503 5.8890 8.7612 23 1 -0.1990 4.5807 8.2210 24 1 0.3928 5.7935 10.2362 25 1 -0.7521 6.9324 8.4273 26 6 5.4131 5.2342 4.7578 27 6 4.1939 3.3845 1.1839 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.9596 0.7830 0.8834 32 1 3.9524 0.7785 -0.8966 33 1 4.0368 2.8529 -2.1443 34 1 4.7247 5.2160 -2.1618 35 1 5.6500 8.3325 -1.1771 36 1 6.1096 6.7597 -1.8716 37 1 4.4028 7.2649 -1.8653 38 1 4.9585 3.5446 3.3987 39 1 2.9072 5.7551 4.1358 40 1 2.7086 3.9538 4.2820 41 1 4.5674 5.9689 7.2717 42 1 3.7264 6.8052 5.9444 43 1 2.0672 8.0641 8.9813 44 1 6.3399 4.7336 5.0379 45 1 5.5195 6.3162 4.6797 46 1 4.0438 2.8680 2.1205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226372571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:46 Heat of formation + Delta-G solvation = -89.072991 kcal Electronic energy + Delta-G solvation = -28756.430877 eV Core-core repulsion = 24613.821897 eV Total energy + Delta-G solvation = -4142.608980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93614 -40.38268 -39.34834 -37.84673 -36.93897 -36.30615 -32.87678 -32.45491 -30.33045 -29.29818 -28.71914 -27.68831 -26.37976 -25.71936 -25.11819 -22.99552 -22.31744 -21.16734 -20.80491 -19.32177 -18.55315 -17.83343 -17.28588 -16.97598 -16.63485 -16.42544 -16.26613 -15.89949 -15.27799 -14.89303 -14.65485 -14.58466 -14.31852 -14.03114 -14.00636 -13.80964 -13.34080 -13.17161 -12.64948 -12.41498 -12.23239 -12.20279 -12.08832 -11.97404 -11.79722 -11.75080 -11.29346 -11.13771 -11.07648 -11.00884 -10.89897 -10.65582 -10.62365 -10.26426 -10.09919 -9.68601 -9.15122 -8.74814 -8.49614 -7.87407 -7.75170 -6.04468 -4.06389 1.13992 1.32739 2.04044 2.55993 3.21390 3.31095 3.34285 3.38241 3.43633 3.65275 4.32775 4.42481 4.56067 4.71020 4.76598 4.82698 4.84118 4.88261 4.89051 4.96989 5.02398 5.04690 5.13009 5.15297 5.30929 5.31452 5.31903 5.36569 5.40687 5.57109 5.78307 6.01562 6.08091 6.10897 6.14749 6.18530 6.37177 6.40079 6.43234 6.59977 6.62132 7.14882 7.22608 7.57134 7.61623 7.70822 7.86090 8.08496 8.39836 9.00668 9.58057 11.06899 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.003297 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.128436 B = 8491.310694 C =10801.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.457 3.543 4 O -0.491 6.491 5 C -0.067 4.067 6 C -0.079 4.079 7 C -0.106 4.106 8 C -0.173 4.173 9 C 0.100 3.900 10 O -0.303 6.303 11 C 0.027 3.973 12 C 0.116 3.884 13 O -0.292 6.292 14 C 0.042 3.958 15 C 0.008 3.992 16 N -0.474 5.474 17 C 0.163 3.837 18 C -0.511 4.511 19 H 0.062 0.938 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.009 3.991 27 C -0.156 4.156 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.002 0.998 43 H 0.261 0.739 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 -11.808 -24.001 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.299 3.701 4 O -0.377 6.377 5 C -0.104 4.104 6 C -0.080 4.080 7 C -0.124 4.124 8 C -0.192 4.192 9 C 0.054 3.946 10 O -0.217 6.217 11 C -0.068 4.068 12 C 0.070 3.930 13 O -0.205 6.205 14 C -0.015 4.015 15 C -0.121 4.121 16 N -0.198 5.198 17 C 0.037 3.963 18 C -0.549 4.549 19 H 0.081 0.919 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.120 4.120 27 C -0.175 4.175 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.447 -11.569 -23.245 26.343 hybrid contribution -1.345 0.574 -0.099 1.466 sum 3.102 -10.995 -23.344 25.989 Atomic orbital electron populations 1.23268 0.76212 1.03617 1.02750 1.86485 1.23554 1.33564 1.84424 1.23740 0.91995 0.81442 0.72968 1.90736 1.66952 1.36198 1.43814 1.20235 0.87878 0.95583 1.06706 1.18848 1.02072 0.94013 0.93026 1.20567 1.00778 0.93974 0.97106 1.20939 1.06235 0.95828 0.96193 1.18335 1.00188 0.84472 0.91609 1.86226 1.82945 1.21656 1.30838 1.23051 1.00790 0.98513 0.84464 1.18225 0.99105 0.90641 0.85077 1.86324 1.85505 1.36830 1.11811 1.24957 0.99367 0.95905 0.81244 1.24261 0.95027 1.02550 0.90276 1.68620 1.01742 1.42126 1.07353 1.20222 0.96874 0.87745 0.91503 1.21115 1.03857 1.05748 1.24213 0.91932 1.24990 0.98014 0.94905 0.96603 1.69968 1.38921 1.10993 1.33725 0.86429 0.83515 0.78477 0.78959 1.19660 1.20913 1.21029 1.24134 0.97371 1.00231 0.90230 1.20954 1.04195 0.93324 0.98991 0.88133 0.91650 0.91979 0.86613 0.86717 0.85879 0.84864 0.88266 0.92878 0.92824 0.88260 0.90362 0.90029 0.94693 0.98010 0.92895 0.89396 0.90690 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.55 101.05 1.07 1.35 16 2 O -0.36 -3.60 10.57 -39.25 -0.41 -4.01 16 3 C 0.46 5.12 7.95 36.01 0.29 5.41 16 4 O -0.49 -7.37 15.78 -18.75 -0.30 -7.67 16 5 C -0.07 -0.56 5.94 -29.03 -0.17 -0.73 16 6 C -0.08 -0.89 4.37 -104.62 -0.46 -1.35 16 7 C -0.11 -1.11 9.69 -39.58 -0.38 -1.50 16 8 C -0.17 -1.95 9.04 -39.46 -0.36 -2.31 16 9 C 0.10 1.42 6.70 -39.12 -0.26 1.16 16 10 O -0.30 -4.35 10.28 -34.23 -0.35 -4.70 16 11 C 0.03 0.24 9.81 101.05 0.99 1.23 16 12 C 0.12 1.81 6.69 -39.12 -0.26 1.55 16 13 O -0.29 -5.20 9.94 -34.22 -0.34 -5.54 16 14 C 0.04 0.71 3.78 -25.80 -0.10 0.62 16 15 C 0.01 0.16 7.32 -2.63 -0.02 0.14 16 16 N -0.47 -10.55 6.25 -239.77 -1.50 -12.05 16 17 C 0.16 4.36 4.58 -4.98 -0.02 4.34 16 18 C -0.51 -14.76 8.84 -34.44 -0.30 -15.06 16 19 H 0.06 1.80 7.80 -52.49 -0.41 1.39 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.01 0.17 7.81 -2.76 -0.02 0.15 16 27 C -0.16 -2.10 8.66 -39.46 -0.34 -2.44 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.12 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.11 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 38 H 0.10 1.45 6.11 -51.93 -0.32 1.14 16 39 H 0.08 1.75 7.79 -51.93 -0.40 1.34 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.00 0.06 7.70 -51.94 -0.40 -0.34 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.07 1.46 7.79 -51.93 -0.40 1.06 16 46 H 0.14 1.75 5.97 -52.49 -0.31 1.44 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -35.66 388.46 -8.52 -44.17 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.73 Total: -0.83 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.45 Total: -5.89 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.76 Total: -38.46 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.40 Total: -21.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.66 -8.52 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226372571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.899 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds