Wall clock time and date at job start Tue Mar 31 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 116.99774 * 2 1 4 4 O 1.20826 * 120.00222 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99790 * 180.27436 * 3 2 1 6 6 C 1.50704 * 109.47177 * 179.72869 * 5 3 2 7 7 C 1.38247 * 119.92598 * 269.72782 * 6 5 3 8 8 C 1.38242 * 120.14501 * 179.71963 * 7 6 5 9 9 C 1.38561 * 119.99897 * 0.55723 * 8 7 6 10 10 O 1.35995 * 120.07505 * 179.70370 * 9 8 7 11 11 C 1.42905 * 116.99964 * 0.02562 * 10 9 8 12 12 C 1.39154 * 119.85500 * 359.71497 * 9 8 7 13 13 O 1.35992 * 120.07495 * 180.02562 * 12 9 8 14 14 C 1.42899 * 117.00241 * 186.17904 * 13 12 9 15 15 C 1.53937 * 113.73668 * 255.85833 * 14 13 12 16 16 N 1.48188 * 86.09960 * 221.95463 * 15 14 13 17 17 C 1.46904 * 111.06713 * 137.51791 * 16 15 14 18 18 C 1.50695 * 109.47071 * 70.57083 * 17 16 15 19 19 H 1.08000 * 120.00375 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00111 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99993 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47190 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47080 * 119.99859 * 22 20 18 25 25 H 1.48493 * 109.47113 * 239.99709 * 22 20 18 26 26 C 1.47962 * 90.80217 * 24.59998 * 16 15 14 27 27 C 1.38241 * 119.92653 * 89.99951 * 6 5 3 28 28 H 1.09004 * 109.47512 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47687 * 299.99804 * 1 2 3 30 30 H 1.09008 * 109.47054 * 59.99685 * 1 2 3 31 31 H 1.09004 * 109.47307 * 299.72916 * 5 3 2 32 32 H 1.09003 * 109.47024 * 59.72843 * 5 3 2 33 33 H 1.08004 * 119.92693 * 359.97438 * 7 6 5 34 34 H 1.08001 * 120.00062 * 180.25138 * 8 7 6 35 35 H 1.09002 * 109.47248 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.47126 * 300.00231 * 11 10 9 37 37 H 1.08997 * 109.46752 * 60.00484 * 11 10 9 38 38 H 1.09006 * 112.93437 * 27.42699 * 14 13 12 39 39 H 1.08995 * 113.75565 * 336.23950 * 15 14 13 40 40 H 1.08995 * 113.76043 * 107.60164 * 15 14 13 41 41 H 1.09006 * 109.46661 * 190.56531 * 17 16 15 42 42 H 1.08989 * 109.47455 * 310.56502 * 17 16 15 43 43 H 0.97000 * 119.99829 * 180.02562 * 21 20 18 44 44 H 1.08992 * 113.75920 * 221.08589 * 26 16 15 45 45 H 1.09001 * 113.75918 * 89.71333 * 26 16 15 46 46 H 1.08000 * 119.99948 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0062 6 6 3.9935 2.7201 -0.0117 7 6 4.1897 3.3768 -1.2123 8 6 4.5761 4.7041 -1.2225 9 6 4.7787 5.3759 -0.0277 10 8 5.1646 6.6799 -0.0361 11 6 5.3422 7.2958 -1.3133 12 6 4.5867 4.7133 1.1808 13 8 4.7838 5.3685 2.3560 14 6 4.7012 4.5925 3.5532 15 6 3.3929 4.8003 4.3372 16 7 4.2407 4.8063 5.5526 17 6 3.8219 5.8628 6.4835 18 6 2.4938 5.4965 7.0942 19 1 2.0091 4.5718 6.8182 20 6 1.8970 6.3426 8.0047 21 7 2.4869 7.4690 8.3405 22 14 0.2503 5.8890 8.7612 23 1 -0.1990 4.5807 8.2210 24 1 0.3928 5.7935 10.2362 25 1 -0.7521 6.9324 8.4273 26 6 5.4131 5.2342 4.7578 27 6 4.1939 3.3845 1.1839 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.9596 0.7830 0.8834 32 1 3.9524 0.7785 -0.8966 33 1 4.0368 2.8529 -2.1443 34 1 4.7247 5.2160 -2.1618 35 1 5.6500 8.3325 -1.1771 36 1 6.1096 6.7597 -1.8716 37 1 4.4028 7.2649 -1.8653 38 1 4.9585 3.5446 3.3987 39 1 2.9072 5.7551 4.1358 40 1 2.7086 3.9538 4.2820 41 1 4.5674 5.9689 7.2717 42 1 3.7264 6.8052 5.9444 43 1 2.0672 8.0641 8.9813 44 1 6.3399 4.7336 5.0379 45 1 5.5195 6.3162 4.6797 46 1 4.0438 2.8680 2.1205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226372571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:46 Heat of formation + Delta-G solvation = -113.962440 kcal Electronic energy + Delta-G solvation = -28757.510164 eV Core-core repulsion = 24613.821897 eV Total energy + Delta-G solvation = -4143.688267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93232 -41.37281 -40.65852 -38.89388 -38.06905 -37.26090 -35.04368 -33.31241 -31.52558 -30.87650 -29.66406 -28.40586 -27.50842 -27.12695 -26.83334 -24.43233 -23.20800 -22.75592 -21.67044 -20.82692 -19.58715 -18.70573 -18.63964 -18.26737 -17.86160 -17.44891 -17.27903 -16.97821 -16.74142 -16.40414 -16.00298 -15.82800 -15.41984 -15.21710 -14.85872 -14.82460 -14.52722 -14.39007 -14.06412 -13.80389 -13.73528 -13.40648 -13.16563 -13.10291 -12.87779 -12.82529 -12.74091 -12.59482 -12.43635 -12.17418 -11.99462 -11.94395 -11.77915 -11.60225 -11.56819 -11.44285 -11.20966 -10.70395 -9.76991 -9.68304 -8.78545 -8.28142 -6.39352 0.22829 0.38251 1.22333 1.36644 1.37449 1.51304 1.83626 2.12256 2.36135 2.38336 2.73847 3.04647 3.12942 3.36481 3.56801 3.75132 3.82355 3.91992 4.01202 4.13810 4.26496 4.32535 4.33303 4.37319 4.41053 4.42804 4.45418 4.49332 4.58138 4.63161 4.66333 4.72481 4.73193 4.77200 4.81458 4.85864 5.05486 5.11674 5.24837 5.41636 5.43677 5.50167 5.68590 5.73486 6.00765 6.14740 6.27484 6.63853 6.74805 6.76819 7.30522 8.84217 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.003297 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.128436 B = 8491.310694 C =10801.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.538 6.538 5 C -0.063 4.063 6 C -0.082 4.082 7 C -0.099 4.099 8 C -0.170 4.170 9 C 0.080 3.920 10 O -0.339 6.339 11 C 0.018 3.982 12 C 0.072 3.928 13 O -0.316 6.316 14 C 0.070 3.930 15 C 0.002 3.998 16 N -0.480 5.480 17 C 0.178 3.822 18 C -0.531 4.531 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.933 5.933 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.278 1.278 26 C 0.007 3.993 27 C -0.162 4.162 28 H 0.132 0.868 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.010 0.990 42 H -0.029 1.029 43 H 0.266 0.734 44 H 0.118 0.882 45 H 0.058 0.942 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.377 -14.512 -26.244 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.302 3.698 4 O -0.428 6.428 5 C -0.100 4.100 6 C -0.083 4.083 7 C -0.117 4.117 8 C -0.188 4.188 9 C 0.035 3.965 10 O -0.253 6.253 11 C -0.076 4.076 12 C 0.027 3.973 13 O -0.230 6.230 14 C 0.013 3.987 15 C -0.127 4.127 16 N -0.204 5.204 17 C 0.051 3.949 18 C -0.569 4.569 19 H 0.079 0.921 20 C -0.196 4.196 21 N -0.573 5.573 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.198 1.198 25 H -0.203 1.203 26 C -0.122 4.122 27 C -0.181 4.181 28 H 0.150 0.850 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.028 0.972 42 H -0.012 1.012 43 H 0.075 0.925 44 H 0.136 0.864 45 H 0.077 0.923 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.248 -14.304 -25.516 29.559 hybrid contribution -1.266 1.397 0.429 1.934 sum 2.982 -12.906 -25.087 28.370 Atomic orbital electron populations 1.23488 0.75299 1.05539 1.02143 1.86489 1.24520 1.32877 1.83903 1.24297 0.93003 0.81020 0.71453 1.90729 1.68150 1.37651 1.46244 1.20396 0.85853 0.94074 1.09633 1.19192 1.01103 0.95534 0.92466 1.21071 0.98576 0.93706 0.98314 1.21323 1.04998 0.96266 0.96209 1.18666 1.00862 0.84814 0.92200 1.86171 1.83217 1.22072 1.33858 1.23346 1.02101 0.99112 0.83035 1.18648 1.02035 0.91991 0.84584 1.86262 1.86322 1.37766 1.12615 1.24607 0.95947 0.97124 0.81012 1.24234 0.96659 1.01314 0.90487 1.68503 1.03658 1.40223 1.08022 1.19868 0.95830 0.87785 0.91429 1.21416 1.04817 1.05905 1.24798 0.92072 1.25961 1.02113 0.94628 0.96915 1.70091 1.40812 1.12057 1.34312 0.85288 0.78327 0.78494 0.78255 1.18761 1.19793 1.20347 1.24207 0.97446 0.99839 0.90689 1.21100 1.04107 0.92657 1.00200 0.84968 0.92967 0.91961 0.84549 0.82796 0.82334 0.81959 0.87175 0.90767 0.91726 0.85155 0.93412 0.89152 0.97151 1.01173 0.92471 0.86392 0.92343 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.55 113.37 1.20 1.60 16 2 O -0.36 -6.29 10.57 -51.41 -0.54 -6.84 16 3 C 0.46 9.26 7.95 71.24 0.57 9.83 16 4 O -0.54 -15.67 15.78 21.96 0.35 -15.33 16 5 C -0.06 -0.83 5.94 29.11 0.17 -0.66 16 6 C -0.08 -1.65 4.37 -19.86 -0.09 -1.74 16 7 C -0.10 -1.75 9.69 22.27 0.22 -1.53 16 8 C -0.17 -3.43 9.04 22.35 0.20 -3.23 16 9 C 0.08 2.27 6.70 22.57 0.15 2.42 16 10 O -0.34 -9.84 10.28 -79.62 -0.82 -10.66 16 11 C 0.02 0.31 9.81 113.37 1.11 1.42 16 12 C 0.07 2.29 6.69 22.57 0.15 2.44 16 13 O -0.32 -11.68 9.94 -79.60 -0.79 -12.48 16 14 C 0.07 2.42 3.78 31.24 0.12 2.54 16 15 C 0.00 0.09 7.32 86.37 0.63 0.73 16 16 N -0.48 -22.13 6.25 -915.71 -5.72 -27.85 16 17 C 0.18 10.08 4.58 85.55 0.39 10.47 16 18 C -0.53 -31.67 8.84 25.60 0.23 -31.45 16 19 H 0.06 3.58 7.80 -2.91 -0.02 3.56 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 22 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C 0.01 0.26 7.81 86.41 0.67 0.94 16 27 C -0.16 -4.21 8.66 22.35 0.19 -4.01 16 28 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.14 1.29 8.08 -2.39 -0.02 1.27 16 32 H 0.15 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.16 2.19 6.30 -2.91 -0.02 2.17 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 37 H 0.06 0.91 7.66 -2.39 -0.02 0.90 16 38 H 0.13 3.68 6.11 -2.38 -0.01 3.66 16 39 H 0.05 2.30 7.79 -2.39 -0.02 2.28 16 40 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 41 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 42 H -0.03 -1.81 7.70 -2.39 -0.02 -1.83 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.06 2.43 7.79 -2.39 -0.02 2.41 16 46 H 0.14 3.40 5.97 -2.91 -0.02 3.38 16 Total: -1.00 -81.85 388.46 2.15 -79.70 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.99 Total: 13.03 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 6.38 Total: -9.64 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -5.44 Total: -85.62 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.81 Total: -45.30 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -81.85 2.15 -79.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226372571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.262 kcal (2) G-P(sol) polarization free energy of solvation -81.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds