Wall clock time and date at job start Tue Mar 31 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00182 * 2 1 4 4 O 1.20824 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00056 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47274 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47274 * 180.02562 * 6 5 3 8 8 C 1.38197 * 119.97377 * 265.02811 * 7 6 5 9 9 C 1.38150 * 120.11082 * 179.97438 * 8 7 6 10 10 C 1.38797 * 120.05217 * 0.02562 * 9 8 7 11 11 O 1.35904 * 120.02215 * 180.02562 * 10 9 8 12 12 C 1.38608 * 119.94770 * 359.74840 * 10 9 8 13 13 C 1.38653 * 119.89041 * 0.48699 * 12 10 9 14 14 O 1.35899 * 120.03142 * 179.78911 * 13 12 10 15 15 C 1.42901 * 116.99632 * 5.81530 * 14 13 12 16 16 C 1.53508 * 114.17253 * 156.73676 * 15 14 13 17 17 N 1.47479 * 87.93077 * 87.61826 * 16 15 14 18 18 C 1.46901 * 110.99768 * 138.70420 * 17 16 15 19 19 C 1.50703 * 109.47252 * 170.00095 * 18 17 16 20 20 H 1.08007 * 119.99994 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00244 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99966 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47164 * 179.97438 * 23 21 19 25 25 H 1.48506 * 109.47335 * 299.99688 * 23 21 19 26 26 H 1.48503 * 109.47629 * 59.99936 * 23 21 19 27 27 C 1.47475 * 87.83914 * 27.01306 * 17 16 15 28 28 H 1.08993 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46749 * 300.00224 * 1 2 3 30 30 H 1.09001 * 109.47086 * 59.99847 * 1 2 3 31 31 H 1.09004 * 109.47350 * 60.00077 * 5 3 2 32 32 H 1.09002 * 109.47223 * 300.00160 * 5 3 2 33 33 H 1.09004 * 109.46552 * 59.99977 * 6 5 3 34 34 H 1.08997 * 109.47221 * 299.99972 * 6 5 3 35 35 H 1.08002 * 119.94269 * 359.97049 * 8 7 6 36 36 H 1.08000 * 119.97428 * 180.02562 * 9 8 7 37 37 H 0.96698 * 113.99853 * 90.00071 * 11 10 9 38 38 H 1.08003 * 120.05810 * 180.25202 * 12 10 9 39 39 H 1.09001 * 113.26060 * 23.78025 * 15 14 13 40 40 H 1.09000 * 113.47389 * 332.85435 * 16 15 14 41 41 H 1.08993 * 113.53524 * 202.39389 * 16 15 14 42 42 H 1.09004 * 109.47358 * 50.00400 * 18 17 16 43 43 H 1.09000 * 109.47330 * 289.99919 * 18 17 16 44 44 H 0.96994 * 119.99587 * 180.02562 * 22 21 19 45 45 H 1.09007 * 113.47779 * 87.75061 * 27 17 16 46 46 H 1.09001 * 113.47861 * 218.22552 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5051 2.8209 -0.0023 8 6 6.1902 2.9607 1.1897 9 6 7.5698 3.0328 1.1920 10 6 8.2712 2.9653 -0.0038 11 8 9.6285 3.0357 -0.0009 12 6 7.5868 2.8203 -1.2003 13 6 6.2019 2.7532 -1.2004 14 8 5.5276 2.6153 -2.3723 15 6 6.3102 2.4178 -3.5515 16 6 5.5571 1.7277 -4.6974 17 7 5.1008 3.0619 -5.1296 18 6 5.1515 3.1873 -6.5924 19 6 4.4552 4.4561 -7.0123 20 1 4.0182 5.1044 -6.2670 21 6 4.3749 4.7890 -8.3478 22 7 4.9065 3.9994 -9.2554 23 14 3.5124 6.3621 -8.8682 24 1 3.5635 6.4888 -10.3469 25 1 2.0962 6.3207 -8.4231 26 1 4.1922 7.5278 -8.2482 27 6 6.3178 3.6177 -4.5091 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2363 0.8890 34 1 3.6102 3.2360 -0.8910 35 1 5.6460 3.0139 2.1212 36 1 8.1029 3.1417 2.1249 37 1 10.0666 2.1771 0.0762 38 1 8.1310 2.7635 -2.1315 39 1 7.2957 1.9985 -3.3489 40 1 4.7480 1.0811 -4.3579 41 1 6.2133 1.2390 -5.4174 42 1 4.6531 2.3316 -7.0479 43 1 6.1911 3.2184 -6.9186 44 1 4.8503 4.2338 -10.1949 45 1 7.1780 3.6336 -5.1784 46 1 6.1534 4.5726 -4.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229101593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:52 Heat of formation + Delta-G solvation = -99.306933 kcal Electronic energy + Delta-G solvation = -28622.809843 eV Core-core repulsion = 24479.757086 eV Total energy + Delta-G solvation = -4143.052757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85736 -40.44656 -39.39876 -37.80009 -36.74691 -36.14127 -33.67574 -32.86990 -30.35205 -29.84313 -29.04148 -27.64105 -25.66649 -25.33758 -24.64030 -23.15680 -21.86879 -21.41342 -20.59699 -19.69726 -18.78680 -17.83055 -16.94379 -16.85015 -16.64724 -16.41588 -16.22592 -15.61023 -15.42213 -15.11681 -14.82398 -14.43788 -14.27627 -13.99221 -13.74107 -13.63394 -13.36073 -13.19127 -12.93577 -12.77413 -12.27797 -12.20550 -12.00759 -11.96824 -11.67693 -11.44049 -11.13853 -11.01339 -10.94000 -10.92582 -10.80881 -10.58490 -10.53608 -10.35948 -10.10513 -9.69851 -9.29654 -8.89705 -8.44191 -8.16087 -7.89432 -6.04768 -4.05727 1.00591 1.25650 2.12585 2.59984 3.11115 3.34844 3.37760 3.42313 3.43553 3.97742 4.42105 4.52983 4.59961 4.66599 4.74076 4.78159 4.86945 4.93572 4.97387 5.02651 5.06529 5.12192 5.22589 5.30680 5.34979 5.38365 5.42387 5.63100 5.67621 5.79004 5.82773 5.99817 6.07337 6.09248 6.10787 6.23887 6.26335 6.28234 6.37156 6.55618 6.58618 7.10149 7.35773 7.52629 7.61476 7.64437 7.83290 8.07169 8.43061 9.01839 9.58639 11.06351 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007766 B = 0.003346 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.775951 B = 8366.824188 C =11034.474952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.504 6.504 5 C -0.105 4.105 6 C -0.059 4.059 7 C -0.129 4.129 8 C -0.061 4.061 9 C -0.188 4.188 10 C 0.143 3.857 11 O -0.499 6.499 12 C -0.237 4.237 13 C 0.162 3.838 14 O -0.269 6.269 15 C 0.042 3.958 16 C 0.001 3.999 17 N -0.455 5.455 18 C 0.157 3.843 19 C -0.505 4.505 20 H 0.063 0.937 21 C 0.054 3.946 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.275 1.275 26 H -0.277 1.277 27 C -0.006 4.006 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.391 0.609 38 H 0.138 0.862 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.004 0.996 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -10.459 23.279 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.391 6.391 5 C -0.143 4.143 6 C -0.096 4.096 7 C -0.130 4.130 8 C -0.079 4.079 9 C -0.207 4.207 10 C 0.099 3.901 11 O -0.310 6.310 12 C -0.256 4.256 13 C 0.115 3.885 14 O -0.181 6.181 15 C -0.014 4.014 16 C -0.128 4.128 17 N -0.178 5.178 18 C 0.030 3.970 19 C -0.543 4.543 20 H 0.081 0.919 21 C -0.147 4.147 22 N -0.541 5.541 23 Si 0.728 3.272 24 H -0.213 1.213 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.135 4.135 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.247 0.753 38 H 0.156 0.844 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.312 -9.314 23.105 25.019 hybrid contribution 0.566 0.137 -0.955 1.119 sum 2.878 -9.177 22.150 24.148 Atomic orbital electron populations 1.23254 0.76421 1.03561 1.02646 1.86502 1.23436 1.33752 1.84277 1.23875 0.92299 0.81251 0.72154 1.90690 1.67267 1.36291 1.44901 1.21382 0.86986 0.99910 1.05983 1.20199 0.90282 0.94126 1.05015 1.19115 0.95562 1.07886 0.90439 1.20728 0.93362 0.96921 0.96879 1.21236 0.94473 1.07300 0.97644 1.18187 0.82818 0.97383 0.91736 1.84819 1.15451 1.34637 1.96059 1.21549 0.93772 1.10671 0.99580 1.18758 0.89805 0.93615 0.86338 1.86210 1.34161 1.85162 1.12557 1.23765 0.94414 0.99739 0.83515 1.23997 0.98900 0.96164 0.93776 1.69107 1.30804 1.03478 1.14376 1.20302 0.96357 0.98440 0.81853 1.21061 1.35361 1.06024 0.91886 0.91857 1.24995 0.95799 0.97316 0.96544 1.69940 1.45530 1.37550 1.01100 0.86528 0.80266 0.83338 0.77118 1.21325 1.20087 1.20219 1.24245 0.95054 0.98350 0.95858 0.88224 0.92043 0.91676 0.87187 0.87870 0.90257 0.88946 0.84963 0.85462 0.75333 0.84391 0.89583 0.89738 0.90394 0.95176 0.97838 0.92850 0.90559 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.99 10.57 -39.26 -0.41 -4.40 16 3 C 0.46 5.60 7.96 36.01 0.29 5.88 16 4 O -0.50 -7.66 15.73 -18.75 -0.29 -7.95 16 5 C -0.11 -1.04 5.79 -27.88 -0.16 -1.20 16 6 C -0.06 -0.67 4.35 -27.88 -0.12 -0.79 16 7 C -0.13 -1.47 5.15 -104.45 -0.54 -2.01 16 8 C -0.06 -0.57 9.67 -39.63 -0.38 -0.95 16 9 C -0.19 -1.80 9.98 -39.41 -0.39 -2.19 16 10 C 0.14 1.55 6.70 -39.24 -0.26 1.29 16 11 O -0.50 -4.78 13.50 -19.44 -0.26 -5.05 16 12 C -0.24 -2.85 8.96 -39.29 -0.35 -3.20 16 13 C 0.16 2.11 6.65 -39.24 -0.26 1.85 16 14 O -0.27 -4.11 9.31 -19.42 -0.18 -4.29 16 15 C 0.04 0.64 4.06 -26.20 -0.11 0.53 16 16 C 0.00 0.02 7.52 -7.55 -0.06 -0.04 16 17 N -0.45 -9.95 6.32 -246.11 -1.55 -11.51 16 18 C 0.16 4.08 4.57 -4.97 -0.02 4.06 16 19 C -0.50 -14.61 9.39 -34.44 -0.32 -14.94 16 20 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 23 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.01 -0.10 7.55 -7.54 -0.06 -0.16 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 34 H 0.09 1.32 7.64 -51.93 -0.40 0.93 16 35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.39 1.74 9.06 45.56 0.41 2.15 16 38 H 0.14 1.60 5.89 -52.48 -0.31 1.29 16 39 H 0.09 1.05 5.90 -51.93 -0.31 0.74 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.24 7.91 -51.93 -0.41 0.83 16 42 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 46 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -35.20 390.33 -8.85 -44.05 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.96 Total: 1.34 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.78 Total: -9.03 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.82 Total: -37.71 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -1.15 Total: -21.69 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.20 -8.85 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229101593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.257 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds