Wall clock time and date at job start Tue Mar 31 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20826 * 120.00264 * 2 1 4 4 O 1.34228 * 120.00281 * 179.97438 * 2 1 3 5 5 C 1.45196 * 117.00400 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47133 * 180.02562 * 6 5 4 8 8 C 1.38247 * 119.92907 * 89.99971 * 7 6 5 9 9 C 1.38244 * 120.14741 * 179.74393 * 8 7 6 10 10 C 1.38560 * 120.00063 * 0.25377 * 9 8 7 11 11 O 1.35998 * 120.07830 * 180.02562 * 10 9 8 12 12 C 1.39161 * 119.85488 * 359.97438 * 10 9 8 13 13 O 1.35986 * 120.07673 * 179.97438 * 12 10 9 14 14 C 1.42902 * 117.00300 * 185.76437 * 13 12 10 15 15 H 1.09002 * 110.88528 * 32.40885 * 14 13 12 16 16 C 1.55156 * 111.00794 * 156.29636 * 14 13 12 17 17 C 1.54327 * 102.94237 * 153.57367 * 16 14 13 18 18 N 1.47017 * 107.27271 * 337.80575 * 17 16 14 19 19 C 1.36939 * 125.64950 * 178.98915 * 18 17 16 20 20 H 1.07997 * 119.99650 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99984 * 359.97270 * 19 18 17 22 22 N 1.31628 * 119.99853 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46891 * 60.00229 * 23 21 19 25 25 H 1.48501 * 109.47171 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47343 * 300.00367 * 23 21 19 27 27 C 1.47429 * 108.70230 * 358.94005 * 18 17 16 28 28 C 1.38244 * 119.92681 * 270.25214 * 7 6 5 29 29 H 1.08999 * 109.46867 * 269.99767 * 1 2 3 30 30 H 1.08996 * 109.46919 * 30.00101 * 1 2 3 31 31 H 1.09002 * 109.46667 * 150.00456 * 1 2 3 32 32 H 1.08996 * 109.47224 * 59.99749 * 5 4 2 33 33 H 1.09003 * 109.47097 * 299.99688 * 5 4 2 34 34 H 1.08996 * 109.47189 * 59.99661 * 6 5 4 35 35 H 1.08997 * 109.47168 * 299.99393 * 6 5 4 36 36 H 1.07999 * 119.92591 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.00002 * 180.23478 * 9 8 7 38 38 H 0.96700 * 113.99585 * 89.99567 * 11 10 9 39 39 H 1.08997 * 110.71690 * 271.93918 * 16 14 13 40 40 H 1.08997 * 110.72280 * 35.20974 * 16 14 13 41 41 H 1.08997 * 109.87749 * 97.22474 * 17 16 14 42 42 H 1.09001 * 109.88018 * 218.22987 * 17 16 14 43 43 H 0.96995 * 119.99828 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36762 * 265.29005 * 27 18 17 45 45 H 1.08998 * 110.36757 * 142.96638 * 27 18 17 46 46 H 1.08009 * 119.99732 * 359.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2130 -2.5002 0.0010 7 6 5.7179 -2.4213 0.0022 8 6 6.4058 -2.3857 1.2008 9 6 7.7866 -2.3186 1.2072 10 6 8.4840 -2.2817 0.0104 11 8 9.8424 -2.2162 0.0149 12 6 7.7914 -2.3128 -1.1962 13 8 8.4712 -2.2762 -2.3733 14 6 7.6939 -2.1835 -3.5689 15 1 6.7825 -1.6111 -3.3964 16 6 8.5252 -1.5702 -4.7266 17 6 7.8509 -2.1568 -5.9847 18 7 7.1448 -3.3785 -5.5721 19 6 6.4024 -4.1866 -6.3914 20 1 5.9209 -5.0660 -5.9901 21 6 6.2688 -3.8752 -7.7375 22 7 6.8561 -2.8035 -8.2265 23 14 5.2555 -4.9770 -8.8549 24 1 3.8568 -5.0328 -8.3590 25 1 5.2694 -4.4293 -10.2351 26 1 5.8342 -6.3446 -8.8586 27 6 7.3693 -3.5903 -4.1305 28 6 6.4073 -2.3795 -1.1954 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 3.9638 -0.5541 0.8910 33 1 3.9645 -0.5545 -0.8890 34 1 3.8773 -3.0322 -0.8892 35 1 3.8768 -3.0325 0.8907 36 1 5.8635 -2.4148 2.1343 37 1 8.3217 -2.2947 2.1450 38 1 10.2777 -3.0797 0.0138 39 1 8.4508 -0.4828 -4.7206 40 1 9.5662 -1.8870 -4.6638 41 1 7.1406 -1.4383 -6.3937 42 1 8.6067 -2.3972 -6.7324 43 1 6.7624 -2.5858 -9.1671 44 1 8.2105 -4.2652 -3.9727 45 1 6.4696 -3.9878 -3.6608 46 1 5.8673 -2.4037 -2.1305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229618822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:04 Heat of formation + Delta-G solvation = -117.806859 kcal Electronic energy + Delta-G solvation = -28671.534097 eV Core-core repulsion = 24527.679123 eV Total energy + Delta-G solvation = -4143.854974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68533 -40.39824 -38.36844 -37.30188 -36.56776 -36.19199 -32.99362 -32.31268 -30.66524 -30.18576 -29.24598 -28.24480 -27.28877 -24.66068 -23.97078 -22.80698 -21.42886 -21.31740 -20.32045 -20.12114 -18.63595 -17.89453 -17.32764 -16.96353 -16.89520 -16.43190 -16.15792 -15.66462 -14.94330 -14.74346 -14.62620 -14.47587 -13.98077 -13.77991 -13.74093 -13.64802 -13.18333 -12.93548 -12.86468 -12.45389 -12.36432 -12.28467 -12.09183 -11.85795 -11.72585 -11.57332 -11.30234 -11.01538 -10.84149 -10.75018 -10.71856 -10.59501 -10.31764 -10.27021 -10.12315 -9.90633 -9.73834 -8.82902 -8.66642 -8.03366 -6.93208 -5.77815 -3.12966 1.05162 1.33732 1.95751 2.47373 3.31630 3.37386 3.41849 3.43233 3.52871 4.18721 4.39408 4.45106 4.60192 4.67840 4.80242 4.86080 4.92395 4.93441 5.05534 5.14195 5.19352 5.22065 5.30607 5.36960 5.45967 5.49432 5.57444 5.59250 5.67293 5.72407 5.81786 6.09347 6.13762 6.21799 6.25007 6.31652 6.38848 6.43188 6.53570 6.57436 6.69934 7.44604 7.47177 7.50101 7.51523 7.73186 7.80977 8.17043 9.13730 9.73462 10.37867 11.33785 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.003466 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.597770 B = 8076.321178 C =10865.559514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.459 3.541 3 O -0.515 6.515 4 O -0.358 6.358 5 C 0.072 3.928 6 C -0.078 4.078 7 C -0.055 4.055 8 C -0.143 4.143 9 C -0.107 4.107 10 C 0.067 3.933 11 O -0.487 6.487 12 C 0.122 3.878 13 O -0.294 6.294 14 C 0.062 3.938 15 H 0.080 0.920 16 C -0.136 4.136 17 C 0.179 3.821 18 N -0.602 5.602 19 C -0.233 4.233 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.921 5.921 23 Si 0.915 3.085 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.122 3.878 28 C -0.188 4.188 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.385 0.615 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.030 0.970 45 H 0.042 0.958 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 1.963 20.792 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.302 3.698 3 O -0.403 6.403 4 O -0.275 6.275 5 C -0.002 4.002 6 C -0.115 4.115 7 C -0.056 4.056 8 C -0.161 4.161 9 C -0.125 4.125 10 C 0.022 3.978 11 O -0.296 6.296 12 C 0.075 3.925 13 O -0.206 6.206 14 C 0.005 3.995 15 H 0.098 0.902 16 C -0.174 4.174 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.361 4.361 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C -0.005 4.005 28 C -0.206 4.206 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.240 0.760 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.862 2.868 20.491 21.505 hybrid contribution -0.438 -0.960 -0.734 1.285 sum -6.300 1.908 19.756 20.824 Atomic orbital electron populations 1.21618 0.87071 1.06014 1.05672 1.23850 0.92162 0.81597 0.72201 1.90714 1.70962 1.33185 1.45415 1.86469 1.22428 1.34898 1.83726 1.23083 0.75633 0.98183 1.03260 1.20487 0.90660 0.95446 1.04950 1.19346 0.94237 0.99277 0.92691 1.20756 0.93514 1.04448 0.97423 1.21159 0.94315 1.00136 0.96920 1.17807 0.83426 1.06959 0.89630 1.84885 1.14650 1.33833 1.96205 1.19511 0.90799 0.95661 0.86546 1.86188 1.35574 1.86844 1.12032 1.23938 0.94573 0.99222 0.81761 0.90187 1.23038 0.99873 0.99784 0.94708 1.21202 0.95018 0.87930 0.90450 1.44324 1.58920 1.27407 1.02300 1.19006 1.23524 1.04056 0.89525 0.90347 1.24821 1.00495 0.98040 0.96843 1.69936 1.47173 1.26291 1.13444 0.86162 0.79814 0.79686 0.79867 1.21087 1.21496 1.21072 1.21906 0.98380 0.93194 0.87043 1.21267 0.92854 1.07149 0.99378 0.87840 0.87933 0.88648 0.90879 0.90699 0.89295 0.89546 0.85591 0.84874 0.76012 0.91355 0.91060 0.93076 0.93176 0.93529 0.95276 0.93989 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.41 36.01 0.37 -0.46 16 2 C 0.46 4.84 8.07 36.01 0.29 5.13 16 3 O -0.51 -7.35 16.85 -18.75 -0.32 -7.67 16 4 O -0.36 -3.85 10.22 -39.25 -0.40 -4.25 16 5 C 0.07 0.78 5.45 37.16 0.20 0.98 16 6 C -0.08 -0.77 5.72 -27.88 -0.16 -0.93 16 7 C -0.06 -0.64 5.13 -104.62 -0.54 -1.17 16 8 C -0.14 -1.48 9.69 -39.58 -0.38 -1.86 16 9 C -0.11 -1.18 9.98 -39.46 -0.39 -1.57 16 10 C 0.07 0.91 6.72 -39.12 -0.26 0.65 16 11 O -0.49 -6.33 13.29 -34.24 -0.46 -6.78 16 12 C 0.12 1.87 6.69 -39.12 -0.26 1.61 16 13 O -0.29 -5.16 9.73 -34.20 -0.33 -5.49 16 14 C 0.06 1.15 2.81 -24.58 -0.07 1.08 16 15 H 0.08 1.44 6.25 -51.93 -0.32 1.11 16 16 C -0.14 -2.64 6.69 -24.90 -0.17 -2.80 16 17 C 0.18 4.32 5.37 -3.07 -0.02 4.31 16 18 N -0.60 -15.33 3.39 -170.07 -0.58 -15.90 16 19 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 23 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.12 2.55 6.85 -2.52 -0.02 2.54 16 28 C -0.19 -2.63 8.59 -39.46 -0.34 -2.97 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.38 3.29 9.06 45.56 0.41 3.71 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.05 1.35 7.38 -51.93 -0.38 0.96 16 42 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.84 7.79 -51.93 -0.40 0.44 16 46 H 0.14 2.04 5.65 -52.48 -0.30 1.74 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.10 385.79 -8.71 -42.81 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.00 Total: 3.15 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.99 Total: -2.31 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.01 Total: -42.07 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.50 Total: -24.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.10 -8.71 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229618822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.997 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds