Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20826 * 120.00264 * 2 1 4 4 O 1.34228 * 120.00281 * 179.97438 * 2 1 3 5 5 C 1.45196 * 117.00400 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47406 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47133 * 180.02562 * 6 5 4 8 8 C 1.38247 * 119.92907 * 89.99971 * 7 6 5 9 9 C 1.38244 * 120.14741 * 179.74393 * 8 7 6 10 10 C 1.38560 * 120.00063 * 0.25377 * 9 8 7 11 11 O 1.35998 * 120.07830 * 180.02562 * 10 9 8 12 12 C 1.39161 * 119.85488 * 359.97438 * 10 9 8 13 13 O 1.35986 * 120.07673 * 179.97438 * 12 10 9 14 14 C 1.42902 * 117.00300 * 185.76437 * 13 12 10 15 15 H 1.09002 * 110.88528 * 32.40885 * 14 13 12 16 16 C 1.55156 * 111.00794 * 156.29636 * 14 13 12 17 17 C 1.54327 * 102.94237 * 153.57367 * 16 14 13 18 18 N 1.47017 * 107.27271 * 337.80575 * 17 16 14 19 19 C 1.36939 * 125.64950 * 178.98915 * 18 17 16 20 20 H 1.07997 * 119.99650 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99984 * 359.97270 * 19 18 17 22 22 N 1.31628 * 119.99853 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46891 * 60.00229 * 23 21 19 25 25 H 1.48501 * 109.47171 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47343 * 300.00367 * 23 21 19 27 27 C 1.47429 * 108.70230 * 358.94005 * 18 17 16 28 28 C 1.38244 * 119.92681 * 270.25214 * 7 6 5 29 29 H 1.08999 * 109.46867 * 269.99767 * 1 2 3 30 30 H 1.08996 * 109.46919 * 30.00101 * 1 2 3 31 31 H 1.09002 * 109.46667 * 150.00456 * 1 2 3 32 32 H 1.08996 * 109.47224 * 59.99749 * 5 4 2 33 33 H 1.09003 * 109.47097 * 299.99688 * 5 4 2 34 34 H 1.08996 * 109.47189 * 59.99661 * 6 5 4 35 35 H 1.08997 * 109.47168 * 299.99393 * 6 5 4 36 36 H 1.07999 * 119.92591 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.00002 * 180.23478 * 9 8 7 38 38 H 0.96700 * 113.99585 * 89.99567 * 11 10 9 39 39 H 1.08997 * 110.71690 * 271.93918 * 16 14 13 40 40 H 1.08997 * 110.72280 * 35.20974 * 16 14 13 41 41 H 1.08997 * 109.87749 * 97.22474 * 17 16 14 42 42 H 1.09001 * 109.88018 * 218.22987 * 17 16 14 43 43 H 0.96995 * 119.99828 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36762 * 265.29005 * 27 18 17 45 45 H 1.08998 * 110.36757 * 142.96638 * 27 18 17 46 46 H 1.08009 * 119.99732 * 359.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2130 -2.5002 0.0010 7 6 5.7179 -2.4213 0.0022 8 6 6.4058 -2.3857 1.2008 9 6 7.7866 -2.3186 1.2072 10 6 8.4840 -2.2817 0.0104 11 8 9.8424 -2.2162 0.0149 12 6 7.7914 -2.3128 -1.1962 13 8 8.4712 -2.2762 -2.3733 14 6 7.6939 -2.1835 -3.5689 15 1 6.7825 -1.6111 -3.3964 16 6 8.5252 -1.5702 -4.7266 17 6 7.8509 -2.1568 -5.9847 18 7 7.1448 -3.3785 -5.5721 19 6 6.4024 -4.1866 -6.3914 20 1 5.9209 -5.0660 -5.9901 21 6 6.2688 -3.8752 -7.7375 22 7 6.8561 -2.8035 -8.2265 23 14 5.2555 -4.9770 -8.8549 24 1 3.8568 -5.0328 -8.3590 25 1 5.2694 -4.4293 -10.2351 26 1 5.8342 -6.3446 -8.8586 27 6 7.3693 -3.5903 -4.1305 28 6 6.4073 -2.3795 -1.1954 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 3.9638 -0.5541 0.8910 33 1 3.9645 -0.5545 -0.8890 34 1 3.8773 -3.0322 -0.8892 35 1 3.8768 -3.0325 0.8907 36 1 5.8635 -2.4148 2.1343 37 1 8.3217 -2.2947 2.1450 38 1 10.2777 -3.0797 0.0138 39 1 8.4508 -0.4828 -4.7206 40 1 9.5662 -1.8870 -4.6638 41 1 7.1406 -1.4383 -6.3937 42 1 8.6067 -2.3972 -6.7324 43 1 6.7624 -2.5858 -9.1671 44 1 8.2105 -4.2652 -3.9727 45 1 6.4696 -3.9878 -3.6608 46 1 5.8673 -2.4037 -2.1305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229618822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = -139.143165 kcal Electronic energy + Delta-G solvation = -28672.459308 eV Core-core repulsion = 24527.679123 eV Total energy + Delta-G solvation = -4144.780186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66940 -41.38772 -39.71218 -38.23413 -37.84660 -37.43827 -34.37371 -33.78327 -31.52566 -31.28672 -30.79654 -29.50780 -28.67435 -26.57283 -24.88380 -23.96726 -22.43862 -22.23366 -21.96465 -21.69570 -19.69952 -19.06732 -18.74263 -18.31395 -17.81444 -17.23717 -17.20706 -16.84186 -16.64438 -16.33310 -15.74520 -15.59872 -15.33687 -15.02627 -14.85779 -14.54096 -14.49349 -14.08621 -13.94485 -13.61652 -13.55841 -13.38937 -13.18506 -13.11048 -12.96021 -12.72463 -12.61380 -12.53878 -12.38861 -12.23990 -12.10904 -11.89647 -11.67501 -11.63406 -11.57402 -11.50573 -11.43430 -10.75229 -9.79153 -9.11556 -8.98857 -7.89824 -5.28018 0.11019 0.35573 1.15154 1.45378 1.48971 1.55417 1.72580 2.04612 2.47910 2.58497 3.26097 3.29216 3.53914 3.60121 3.66574 3.76159 3.85926 3.90292 3.91648 3.99768 4.01188 4.19004 4.31777 4.33142 4.44239 4.50870 4.53329 4.57806 4.69514 4.72038 4.77047 4.80625 4.88476 4.93313 4.95714 5.04366 5.19104 5.29345 5.38157 5.47038 5.52092 5.53214 5.65303 5.75155 6.10289 6.29856 6.68667 6.87978 7.02577 7.67571 8.31682 9.20481 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007573 B = 0.003466 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3696.597770 B = 8076.321178 C =10865.559514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.453 3.547 3 O -0.560 6.560 4 O -0.358 6.358 5 C 0.072 3.928 6 C -0.070 4.070 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.101 4.101 10 C 0.060 3.940 11 O -0.500 6.500 12 C 0.085 3.915 13 O -0.305 6.305 14 C 0.082 3.918 15 H 0.084 0.916 16 C -0.125 4.125 17 C 0.188 3.812 18 N -0.622 5.622 19 C -0.251 4.251 20 H 0.085 0.915 21 C -0.062 4.062 22 N -0.950 5.950 23 Si 0.983 3.017 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.123 3.877 28 C -0.198 4.198 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.403 0.597 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.022 0.978 42 H 0.017 0.983 43 H 0.249 0.751 44 H 0.026 0.974 45 H 0.050 0.950 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 1.113 23.693 24.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.300 3.700 3 O -0.451 6.451 4 O -0.275 6.275 5 C -0.002 4.002 6 C -0.107 4.107 7 C -0.058 4.058 8 C -0.146 4.146 9 C -0.119 4.119 10 C 0.015 3.985 11 O -0.312 6.312 12 C 0.039 3.961 13 O -0.218 6.218 14 C 0.025 3.975 15 H 0.101 0.899 16 C -0.163 4.163 17 C 0.063 3.937 18 N -0.350 5.350 19 C -0.379 4.379 20 H 0.103 0.897 21 C -0.255 4.255 22 N -0.599 5.599 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.202 1.202 27 C -0.003 4.003 28 C -0.217 4.217 29 H 0.147 0.853 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.260 0.740 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.281 1.982 23.437 24.622 hybrid contribution 0.004 -0.717 -1.480 1.644 sum -7.278 1.266 21.957 23.166 Atomic orbital electron populations 1.21772 0.83139 1.07128 1.07607 1.24901 0.93886 0.80740 0.70522 1.90696 1.72151 1.34551 1.47694 1.86489 1.22236 1.35208 1.83540 1.23036 0.76067 0.98686 1.02426 1.20451 0.89421 0.94848 1.05976 1.19548 0.95136 0.98741 0.92356 1.21192 0.93447 1.01749 0.98214 1.21504 0.94708 0.98694 0.97014 1.18079 0.83768 1.06884 0.89778 1.84828 1.14620 1.35571 1.96187 1.19844 0.91558 0.98512 0.86178 1.86133 1.35569 1.87835 1.12276 1.23497 0.94507 0.97145 0.82333 0.89869 1.22863 0.99761 1.00804 0.92849 1.20915 0.93527 0.87269 0.91981 1.44598 1.58783 1.27488 1.04128 1.19427 1.23602 1.04578 0.90283 0.89727 1.25704 1.01913 0.99571 0.98302 1.70158 1.48523 1.27917 1.13262 0.85096 0.78572 0.77934 0.77376 1.19979 1.21894 1.20223 1.21971 0.98458 0.94914 0.84960 1.21250 0.92530 1.08017 0.99919 0.85279 0.87334 0.86956 0.90386 0.92965 0.89948 0.86831 0.81992 0.81918 0.73982 0.89286 0.90378 0.95986 0.96474 0.94134 0.95650 0.93218 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 10.41 71.24 0.74 -0.52 16 2 C 0.45 9.11 8.07 71.24 0.57 9.68 16 3 O -0.56 -15.99 16.85 21.96 0.37 -15.62 16 4 O -0.36 -7.22 10.22 -51.39 -0.53 -7.74 16 5 C 0.07 1.49 5.45 71.98 0.39 1.88 16 6 C -0.07 -1.23 5.72 29.85 0.17 -1.06 16 7 C -0.06 -1.22 5.13 -19.86 -0.10 -1.32 16 8 C -0.13 -2.19 9.69 22.27 0.22 -1.97 16 9 C -0.10 -1.90 9.98 22.35 0.22 -1.68 16 10 C 0.06 1.54 6.72 22.57 0.15 1.69 16 11 O -0.50 -12.26 13.29 -79.66 -1.06 -13.32 16 12 C 0.08 2.57 6.69 22.57 0.15 2.72 16 13 O -0.31 -10.72 9.73 -79.53 -0.77 -11.50 16 14 C 0.08 3.10 2.81 31.99 0.09 3.19 16 15 H 0.08 3.07 6.25 -2.39 -0.01 3.05 16 16 C -0.12 -4.94 6.69 31.78 0.21 -4.72 16 17 C 0.19 9.53 5.37 86.73 0.47 9.99 16 18 N -0.62 -32.70 3.39 -691.99 -2.35 -35.05 16 19 C -0.25 -14.14 10.28 84.03 0.86 -13.27 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 22 N -0.95 -57.17 10.31 21.65 0.22 -56.95 16 23 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.12 5.27 6.85 86.86 0.60 5.86 16 28 C -0.20 -5.49 8.59 22.35 0.19 -5.30 16 29 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 34 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 35 H 0.11 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.40 6.31 9.06 -74.06 -0.67 5.64 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 42 H 0.02 0.96 7.50 -2.39 -0.02 0.94 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 46 H 0.12 3.73 5.65 -2.91 -0.02 3.71 16 Total: -1.00 -76.63 385.79 3.65 -72.99 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.33 Total: 17.58 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.40 Total: 2.15 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -2.13 Total: -92.00 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.99 Total: -48.18 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.63 3.65 -72.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229618822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.158 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds