Wall clock time and date at job start Tue Mar 31 2020 18:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 109.46805 * 2 1 4 4 C 1.46903 * 109.46912 * 240.00533 * 2 1 3 5 5 C 1.46897 * 109.47245 * 120.00345 * 2 1 3 6 6 C 1.52994 * 109.47458 * 63.81839 * 5 2 1 7 7 H 1.09007 * 109.46861 * 53.93974 * 6 5 2 8 8 C 1.50697 * 109.47416 * 173.94016 * 6 5 2 9 9 H 1.08007 * 119.99805 * 245.14539 * 8 6 5 10 10 C 1.37877 * 119.99993 * 65.14003 * 8 6 5 11 11 N 1.31512 * 119.99901 * 200.84703 * 10 8 6 12 12 Si 1.86797 * 119.99876 * 20.85021 * 10 8 6 13 13 H 1.48498 * 109.46825 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47065 * 299.99971 * 12 10 8 15 15 H 1.48498 * 109.46948 * 60.00017 * 12 10 8 16 16 O 1.42896 * 109.47145 * 293.94385 * 6 5 2 17 17 C 1.35901 * 117.00236 * 157.39505 * 16 6 5 18 18 C 1.38112 * 119.72829 * 2.90325 * 17 16 6 19 19 C 1.39188 * 119.69741 * 179.77184 * 18 17 16 20 20 N 1.37065 * 133.76930 * 180.12995 * 19 18 17 21 21 H 0.97001 * 125.46277 * 0.31846 * 20 19 18 22 22 N 1.39861 * 109.07426 * 180.34294 * 20 19 18 23 23 C 1.30224 * 110.10301 * 359.97438 * 22 20 19 24 24 C 1.40857 * 119.49017 * 0.50501 * 19 18 17 25 25 C 1.39935 * 119.83630 * 359.74971 * 24 19 18 26 26 C 1.36379 * 119.84909 * 359.97438 * 25 24 19 27 27 N 1.48018 * 119.70819 * 180.02562 * 26 25 24 28 28 O 1.21804 * 120.00111 * 359.97438 * 27 26 25 29 29 O 1.21802 * 120.00122 * 179.97438 * 27 26 25 30 30 H 1.09001 * 109.47178 * 290.38261 * 1 2 3 31 31 H 1.08994 * 109.47534 * 50.38975 * 1 2 3 32 32 H 1.09005 * 109.47050 * 170.38776 * 1 2 3 33 33 H 1.09003 * 109.47358 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47765 * 300.00203 * 3 2 1 35 35 H 1.09006 * 109.47341 * 60.00011 * 3 2 1 36 36 H 1.09000 * 109.46594 * 299.99283 * 4 2 1 37 37 H 1.08995 * 109.47218 * 59.99544 * 4 2 1 38 38 H 1.09003 * 109.46629 * 179.97438 * 4 2 1 39 39 H 1.09006 * 109.46882 * 303.81770 * 5 2 1 40 40 H 1.09000 * 109.46860 * 183.82012 * 5 2 1 41 41 H 0.97001 * 119.99975 * 354.95424 * 11 10 8 42 42 H 1.08009 * 120.15056 * 0.02562 * 18 17 16 43 43 H 1.08001 * 126.10521 * 179.97438 * 23 22 20 44 44 H 1.07990 * 120.07608 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9586 -0.6924 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5287 -2.1601 1.1523 7 1 1.8555 -2.6044 0.2120 8 6 2.1544 -2.9041 2.3037 9 1 2.8772 -3.6839 2.1138 10 6 1.8042 -2.5893 3.5996 11 7 2.6024 -2.9129 4.5935 12 14 0.1961 -1.7034 3.9436 13 1 0.0550 -1.4835 5.4054 14 1 0.1926 -0.3941 3.2428 15 1 -0.9379 -2.5289 3.4559 16 8 0.1054 -2.2427 1.2488 17 6 -0.4816 -3.3683 0.7636 18 6 0.3032 -4.3896 0.2650 19 6 -0.2985 -5.5441 -0.2273 20 7 0.1832 -6.7058 -0.7724 21 1 1.1201 -6.9185 -0.9062 22 7 -0.8927 -7.5350 -1.1053 23 6 -2.0171 -6.9546 -0.7974 24 6 -1.7030 -5.6511 -0.2202 25 6 -2.4786 -4.6017 0.2849 26 6 -1.8713 -3.4804 0.7684 27 7 -2.6947 -2.3724 1.3025 28 8 -3.9093 -2.4643 1.3084 29 8 -2.1579 -1.3688 1.7360 30 1 -0.3633 0.3579 0.9633 31 1 -0.3634 0.6551 -0.7916 32 1 -0.3633 -1.0133 -0.1716 33 1 3.0486 1.3851 0.0005 34 1 1.5952 1.8989 -0.8900 35 1 1.5952 1.8988 0.8900 36 1 1.5954 -1.7201 -1.1995 37 1 1.5953 -0.1786 -2.0894 38 1 3.0487 -0.6920 -1.1997 39 1 1.5405 -0.2197 2.0881 40 1 3.0466 -0.6336 1.2342 41 1 3.4009 -3.4367 4.4234 42 1 1.3791 -4.2945 0.2609 43 1 -3.0057 -7.3641 -0.9440 44 1 -3.5557 -4.6798 0.2927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230602296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:33 Heat of formation + Delta-G solvation = 158.754177 kcal Electronic energy + Delta-G solvation = -31595.603004 eV Core-core repulsion = 27444.263196 eV Total energy + Delta-G solvation = -4151.339808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.42059 -42.87927 -42.40811 -40.45147 -37.73451 -37.38170 -35.29563 -33.77979 -32.58795 -31.52366 -30.47920 -29.65653 -29.52233 -27.81572 -27.15555 -25.14336 -24.17255 -23.49091 -22.84100 -22.45409 -20.59754 -20.14072 -19.79976 -19.31351 -18.72199 -18.43275 -18.21947 -17.79425 -17.54534 -16.83455 -16.54427 -16.24986 -15.95348 -15.61607 -15.38422 -15.09414 -14.79700 -14.50829 -14.38583 -14.04557 -13.68831 -13.58047 -13.32569 -13.18722 -13.12952 -13.09575 -13.05921 -12.80619 -12.49338 -12.44100 -12.24424 -12.12850 -12.09041 -12.01427 -11.71094 -11.30760 -11.22053 -10.67236 -9.83128 -9.40862 -8.93501 -6.80421 -1.05688 -0.39319 0.34678 0.48425 0.85674 1.19545 1.27812 1.40581 1.56142 1.68252 1.97598 2.20007 2.32696 2.68941 2.89795 2.96652 3.06239 3.12386 3.37684 3.42336 3.51881 3.70605 3.80182 3.89745 4.09078 4.15107 4.19434 4.26889 4.29535 4.35984 4.39679 4.45963 4.49368 4.52516 4.56035 4.67656 4.77381 4.81236 4.86173 5.01595 5.14930 5.28272 5.39030 5.79954 5.88091 6.03543 6.32222 6.36996 6.69332 7.11226 8.40740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.260 5.260 3 C -0.047 4.047 4 C -0.055 4.055 5 C 0.006 3.994 6 C 0.155 3.845 7 H 0.101 0.899 8 C -0.624 4.624 9 H 0.050 0.950 10 C 0.016 3.984 11 N -0.911 5.911 12 Si 1.089 2.911 13 H -0.345 1.345 14 H -0.210 1.210 15 H -0.293 1.293 16 O -0.301 6.301 17 C 0.240 3.760 18 C -0.225 4.225 19 C 0.200 3.800 20 N -0.500 5.500 21 H 0.454 0.546 22 N -0.273 5.273 23 C 0.119 3.881 24 C -0.229 4.229 25 C 0.076 3.924 26 C -0.126 4.126 27 N 0.047 4.953 28 O -0.217 6.217 29 O -0.145 6.145 30 H 0.111 0.889 31 H 0.145 0.855 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.160 0.840 41 H 0.268 0.732 42 H 0.167 0.833 43 H 0.242 0.758 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 11.015 -20.197 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 N 0.082 4.918 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.115 4.115 6 C 0.101 3.899 7 H 0.119 0.881 8 C -0.661 4.661 9 H 0.068 0.932 10 C -0.191 4.191 11 N -0.543 5.543 12 Si 0.919 3.081 13 H -0.277 1.277 14 H -0.134 1.134 15 H -0.220 1.220 16 O -0.213 6.213 17 C 0.188 3.812 18 C -0.249 4.249 19 C 0.079 3.921 20 N -0.214 5.214 21 H 0.301 0.699 22 N -0.085 5.085 23 C -0.080 4.080 24 C -0.238 4.238 25 C 0.054 3.946 26 C -0.213 4.213 27 N 0.559 4.441 28 O -0.418 6.418 29 O -0.367 6.367 30 H 0.129 0.871 31 H 0.163 0.837 32 H 0.119 0.881 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.178 0.822 41 H 0.078 0.922 42 H 0.184 0.816 43 H 0.258 0.742 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.305 10.251 -19.719 22.262 hybrid contribution 1.151 -0.781 0.387 1.444 sum 2.456 9.470 -19.331 21.666 Atomic orbital electron populations 1.24449 0.76664 1.08736 1.09517 1.46058 1.15084 1.16140 1.14544 1.24327 1.06128 0.78350 1.09924 1.24346 1.06410 1.01600 0.87195 1.24552 1.05674 0.92821 0.88475 1.21093 0.75290 0.93442 1.00088 0.88138 1.22063 1.28218 1.23949 0.91868 0.93210 1.26742 1.02106 0.97121 0.93138 1.70991 1.12980 1.33168 1.37192 0.83437 0.72329 0.78991 0.73305 1.27654 1.13397 1.22019 1.86317 1.26804 1.34467 1.73739 1.17873 0.88065 0.87631 0.87627 1.19983 1.01509 0.92088 1.11333 1.18885 0.93599 0.88384 0.91216 1.46217 1.09428 1.11476 1.54285 0.69857 1.76765 0.94764 1.17149 1.19799 1.25886 0.99169 0.89488 0.93438 1.19782 0.91967 0.98327 1.13703 1.20201 1.02650 0.86476 0.85240 1.20060 0.88447 0.93133 1.19707 1.43366 1.01017 1.01844 0.97890 1.94547 0.96421 1.87609 1.63240 1.94428 1.75122 1.20441 1.46733 0.87087 0.83735 0.88096 0.85045 0.83865 0.86719 0.88201 0.83630 0.84589 0.86417 0.82202 0.92159 0.81559 0.74163 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.10 6.59 127.69 0.84 1.94 16 2 N -0.26 6.61 0.05 ******* -0.07 6.54 16 3 C -0.05 1.48 8.00 127.69 1.02 2.51 16 4 C -0.05 1.62 7.55 127.69 0.96 2.58 16 5 C 0.01 -0.08 3.53 86.30 0.30 0.23 16 6 C 0.15 -0.55 1.36 29.85 0.04 -0.51 16 7 H 0.10 -1.05 4.06 -2.38 -0.01 -1.06 16 8 C -0.62 -8.00 8.28 25.60 0.21 -7.79 16 9 H 0.05 0.94 8.06 -2.91 -0.02 0.91 16 10 C 0.02 0.35 5.31 84.66 0.45 0.80 16 11 N -0.91 -28.39 13.70 21.45 0.29 -28.10 16 12 Si 1.09 19.19 23.40 68.60 1.61 20.80 16 13 H -0.34 -9.24 7.11 99.48 0.71 -8.53 16 14 H -0.21 -1.12 5.63 99.48 0.56 -0.56 16 15 H -0.29 -5.65 5.99 99.48 0.60 -5.05 16 16 O -0.30 0.02 1.05 -71.11 -0.07 -0.06 16 17 C 0.24 0.47 6.01 22.52 0.14 0.60 16 18 C -0.23 -0.01 8.70 22.47 0.20 0.19 16 19 C 0.20 0.10 7.33 39.19 0.29 0.38 16 20 N -0.50 0.30 7.37 -51.55 -0.38 -0.08 16 21 H 0.45 -2.33 8.96 -213.47 -1.91 -4.24 16 22 N -0.27 -0.34 12.54 -53.06 -0.67 -1.00 16 23 C 0.12 -0.36 12.28 86.94 1.07 0.71 16 24 C -0.23 0.09 6.36 -20.22 -0.13 -0.04 16 25 C 0.08 0.00 9.55 22.25 0.21 0.21 16 26 C -0.13 -0.49 6.82 36.23 0.25 -0.24 16 27 N 0.05 0.37 4.45 -46.82 -0.21 0.16 16 28 O -0.22 -2.22 18.39 18.88 0.35 -1.87 16 29 O -0.15 -1.08 13.54 25.65 0.35 -0.73 16 30 H 0.11 -1.82 7.55 -2.39 -0.02 -1.84 16 31 H 0.14 -4.10 8.00 -2.39 -0.02 -4.12 16 32 H 0.10 -1.57 5.00 -2.38 -0.01 -1.59 16 33 H 0.13 -4.39 8.12 -2.39 -0.02 -4.41 16 34 H 0.14 -5.18 8.07 -2.38 -0.02 -5.20 16 35 H 0.11 -3.37 8.14 -2.38 -0.02 -3.39 16 36 H 0.10 -2.56 5.88 -2.39 -0.01 -2.57 16 37 H 0.15 -5.06 8.14 -2.39 -0.02 -5.08 16 38 H 0.14 -4.37 8.14 -2.39 -0.02 -4.39 16 39 H 0.12 -1.07 4.91 -2.38 -0.01 -1.08 16 40 H 0.16 -2.71 8.10 -2.39 -0.02 -2.73 16 41 H 0.27 8.44 8.73 -92.71 -0.81 7.63 16 42 H 0.17 -0.34 5.61 -2.91 -0.02 -0.36 16 43 H 0.24 -2.80 8.06 -2.91 -0.02 -2.82 16 44 H 0.18 -0.74 7.55 -2.92 -0.02 -0.76 16 Total: 0.00 -59.89 342.00 5.90 -53.98 By element: Atomic # 1 Polarization: -50.08 SS G_CDS: -1.15 Total: -51.22 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.85 Total: 1.59 kcal Atomic # 7 Polarization: -21.46 SS G_CDS: -1.03 Total: -22.48 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.62 Total: -2.66 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: 1.61 Total: 20.80 kcal Total: -59.89 5.90 -53.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230602296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.738 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds